##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138861_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5283381 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.202209532115894 18.0 18.0 32.0 18.0 33.0 2 30.436175623147374 32.0 27.0 33.0 27.0 33.0 3 30.96326708219604 33.0 30.0 33.0 27.0 33.0 4 32.29700924464846 33.0 33.0 33.0 31.0 33.0 5 32.7719901328335 33.0 33.0 33.0 32.0 34.0 6 37.14895726808269 38.0 37.0 38.0 36.0 38.0 7 37.14219417452574 38.0 38.0 38.0 36.0 38.0 8 37.44983846517978 38.0 38.0 38.0 37.0 38.0 9 37.50344561560107 38.0 38.0 38.0 37.0 38.0 10-11 37.53100807986401 38.0 38.0 38.0 37.0 38.0 12-13 37.54889104155086 38.0 38.0 38.0 37.5 38.0 14-15 37.560820145281966 38.0 38.0 38.0 38.0 38.0 16-17 37.566195680379664 38.0 38.0 38.0 38.0 38.0 18-19 37.56261511331475 38.0 38.0 38.0 38.0 38.0 20-21 37.55602625224327 38.0 38.0 38.0 38.0 38.0 22-23 37.564722465768 38.0 38.0 38.0 38.0 38.0 24-25 37.5311191758629 38.0 38.0 38.0 38.0 38.0 26-27 37.52991691386552 38.0 38.0 38.0 38.0 38.0 28-29 37.518614720596474 38.0 38.0 38.0 37.5 38.0 30-31 37.51190020282499 38.0 38.0 38.0 37.5 38.0 32-33 37.50830407911252 38.0 38.0 38.0 38.0 38.0 34-35 37.49461823871437 38.0 38.0 38.0 37.5 38.0 36-37 37.47180109372417 38.0 38.0 38.0 37.0 38.0 38-39 37.4523836555383 38.0 38.0 38.0 37.0 38.0 40-41 37.4324830537925 38.0 38.0 38.0 37.0 38.0 42-43 37.41340921900217 38.0 38.0 38.0 37.0 38.0 44-45 37.38746601959811 38.0 38.0 38.0 37.0 38.0 46-47 37.35643634728382 38.0 38.0 38.0 37.0 38.0 48-49 37.31775953186915 38.0 38.0 38.0 37.0 38.0 50-51 37.29985156624761 38.0 38.0 38.0 37.0 38.0 52-53 37.2870834800335 38.0 38.0 38.0 37.0 38.0 54-55 37.263821380388066 38.0 38.0 38.0 37.0 38.0 56-57 37.23177544672623 38.0 38.0 38.0 37.0 38.0 58-59 37.235766382219246 38.0 38.0 38.0 37.0 38.0 60-61 37.250604411624224 38.0 38.0 38.0 37.0 38.0 62-63 37.254808440013996 38.0 38.0 38.0 37.0 38.0 64-65 37.260719525194965 38.0 38.0 38.0 37.0 38.0 66-67 37.2665919431627 38.0 38.0 38.0 37.0 38.0 68-69 37.26468461274827 38.0 38.0 38.0 37.0 38.0 70-71 37.232894972464585 38.0 38.0 38.0 37.0 38.0 72-73 37.21187503984348 38.0 38.0 38.0 37.0 38.0 74-75 37.19467032432965 38.0 38.0 38.0 36.5 38.0 76-77 37.196402914092246 38.0 38.0 38.0 36.0 38.0 78-79 37.19993617852084 38.0 38.0 38.0 36.0 38.0 80-81 37.189031028689115 38.0 38.0 38.0 36.0 38.0 82-83 37.190605440431355 38.0 38.0 38.0 36.0 38.0 84-85 37.18078948641627 38.0 38.0 38.0 36.0 38.0 86-87 37.15371201684058 38.0 38.0 38.0 36.0 38.0 88-89 37.11427543548237 38.0 38.0 38.0 36.0 38.0 90-91 37.11955164897195 38.0 38.0 38.0 36.0 38.0 92-93 37.09997072484765 38.0 38.0 38.0 36.0 38.0 94-95 37.080033923329964 38.0 38.0 38.0 36.0 38.0 96-97 37.07177431827026 38.0 38.0 38.0 36.0 38.0 98-99 37.10984802471765 38.0 38.0 38.0 36.0 38.0 100 35.47922482969523 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 10.0 19 16.0 20 50.0 21 142.0 22 326.0 23 792.0 24 1686.0 25 3309.0 26 5997.0 27 9635.0 28 15323.0 29 22873.0 30 32360.0 31 43182.0 32 56776.0 33 75792.0 34 113608.0 35 212127.0 36 761856.0 37 3927518.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.16900579382786 23.567900933133537 14.091412298299138 24.17168097473947 2 14.057267495946252 20.915262404888082 41.87966001316203 23.147810086003638 3 17.796123353587408 25.980409135740924 30.87774665503018 25.345720855641492 4 12.520334990037629 18.045433407130776 39.19253599163112 30.24169561120048 5 13.283545756793123 37.45261075284449 35.666565206165465 13.59727828419692 6 29.66412984412822 38.19347875915063 18.921141594747755 13.221249801973395 7 26.097200295492712 32.71027878181747 23.569707946372954 17.622812976316858 8 23.791720451680554 37.27256036855195 21.3955649603095 17.540154219458 9 25.20007086375421 17.101615670883287 21.668901978999042 36.02941148636346 10-11 24.015864464049105 26.8964822806156 29.16842729763643 19.919225957698863 12-13 24.785757453418558 24.40132559056407 29.32454615709145 21.488370798925914 14-15 21.89182457218209 25.80255900530361 26.98390481398181 25.321711608532492 16-17 21.55380238525293 28.856001488440832 27.632249122294983 21.95794700401126 18-19 21.556499521802422 28.060355669977238 29.3979839803338 20.98516082788654 20-21 22.346580882377296 27.264511895387177 29.2321063829163 21.15680083931922 22-23 22.0708346295104 27.144772796682748 29.078055396533646 21.706337177273205 24-25 21.82354373103782 27.233675772551507 29.176790556067484 21.765989940343193 26-27 21.839125066316196 27.426638075176186 29.01813218563519 21.716104672872426 28-29 21.728084208780224 27.543077080827675 29.066566281058808 21.66227242933329 30-31 22.03377446591394 27.303721146388742 29.038121982155058 21.62438240554226 32-33 21.835573454920038 27.438245040155824 28.96053509190411 21.76564641302003 34-35 21.88410658035326 27.482694968466937 29.001973297693954 21.63122515348585 36-37 21.937861631036615 27.375781274042232 28.935701139156283 21.75065595576487 38-39 21.767022744797387 27.54645013486779 29.001082518016496 21.68544460231833 40-41 22.016030256909183 27.387190789040268 28.919432446909315 21.677346507141234 42-43 21.914560335935402 27.439768051279845 28.75713715707032 21.888534455714428 44-45 22.00587360565624 27.530976697833005 28.636456375628267 21.82669332088249 46-47 22.007167175121502 27.533046925981928 28.419752847023886 22.040033051872683 48-49 21.993307906170976 27.63189093064612 28.43302617161538 21.941774991567524 50-51 21.930364552036515 27.725839175629506 28.334858052226288 22.008938220107694 52-53 22.115630763347394 27.661786358760267 28.217440087546862 22.005142790345474 54-55 22.124813365902533 27.561136713000682 28.26153045271895 22.05251946837783 56-57 22.100562793982064 27.652822279302242 28.213834941909422 22.03277998480627 58-59 22.043089350700594 27.684160250852702 28.26683210208542 22.005918296361283 60-61 22.099816975055706 27.61215801677111 28.32194253154976 21.966082476623427 62-63 22.065548925364094 27.6683317472406 28.241088629848193 22.02503069754711 64-65 22.05815116696279 27.63296023027955 28.25125928803805 22.05762931471961 66-67 22.12566982131041 27.697869521962982 28.074122610790198 22.102338045936406 68-69 22.087650884175243 27.683322631904783 28.119328993305515 22.10969749061446 70-71 22.145781349011234 27.469786646262957 28.107479256666924 22.276952748058886 72-73 22.177267980105295 27.493568598701135 28.096380430134598 22.232782991058976 74-75 22.057793199377933 27.647284882239397 28.027265083488377 22.26765683489429 76-77 22.230626783082226 27.52575924673504 27.958515267853695 22.285098702329044 78-79 22.19022772783876 27.600296880997544 27.923491710062304 22.28598368110139 80-81 22.17982669977976 27.60642931430139 27.926111674984583 22.28763231093427 82-83 22.260130005578034 27.591458991464425 27.970686418588436 22.17772458436911 84-85 22.32059377168826 27.6084919889528 27.85838528359016 22.212528955768782 86-87 22.193221344661662 27.61932419356003 27.932909988368486 22.254544473409823 88-89 22.318994436115755 27.55492751648005 27.869584657356068 22.25649339004813 90-91 22.316398379402187 27.641796267289415 27.864959526135113 22.176845827173285 92-93 22.355905607961656 27.64849039899869 27.878193973807125 22.11741001923253 94-95 22.21836075053676 27.781596039389317 27.85710255713514 22.142940652938787 96-97 22.33289691156059 27.802536762673185 27.93495522758938 21.929611098176846 98-99 23.409965506524237 29.727170989705538 28.121877398715924 18.740986105054304 100 22.284919148931312 30.64230247542991 22.113551354262178 24.9592270213766 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 668.0 1 812.0 2 1331.5 3 1853.0 4 2329.5 5 3009.5 6 3559.5 7 4586.5 8 5804.0 9 6470.5 10 6793.0 11 7081.0 12 7952.0 13 9651.0 14 12734.0 15 16021.5 16 17810.0 17 18157.5 18 17475.0 19 16358.0 20 15458.0 21 15310.0 22 16675.5 23 20226.0 24 26185.0 25 34459.0 26 44898.0 27 56461.5 28 68266.5 29 81297.0 30 93912.0 31 106129.5 32 119000.5 33 130927.5 34 142310.0 35 152975.0 36 163697.0 37 175087.5 38 183920.5 39 190264.0 40 198248.5 41 205768.0 42 209855.0 43 213354.0 44 216759.5 45 220423.0 46 222481.0 47 222525.0 48 221378.5 49 217672.0 50 212881.0 51 204960.5 52 194614.5 53 184329.5 54 173433.0 55 160586.0 56 146900.0 57 132690.0 58 117031.0 59 101070.5 60 84869.0 61 69101.5 62 54684.5 63 42143.0 64 31585.5 65 23269.0 66 17279.5 67 13303.5 68 10125.0 69 7303.0 70 5151.0 71 3583.5 72 2489.0 73 1633.5 74 1061.5 75 727.5 76 491.0 77 291.5 78 183.5 79 122.0 80 76.0 81 48.5 82 32.0 83 21.5 84 16.0 85 11.0 86 7.5 87 5.5 88 2.5 89 1.5 90 2.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.010163946154933745 6 0.0 7 3.7854548063067945E-5 8 1.8927274031533972E-5 9 5.6781822094601924E-5 10-11 9.463637015766986E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.205462934595819E-4 26-27 0.0 28-29 5.870099804004942E-4 30-31 0.0022838248437119907 32-33 2.3739433696758742E-4 34-35 4.7602083143321684E-5 36-37 3.3449952610974283E-4 38-39 6.920685293947457E-4 40-41 5.610838980046212E-4 42-43 2.044677767059988E-4 44-45 0.0 46-47 0.0013454843763541409 48-49 7.983404099557839E-5 50-51 0.0019419161802569102 52-53 0.0014294899519022254 54-55 0.002727418988250136 56-57 0.0025946870282328722 58-59 0.0036754384361985418 60-61 0.002816816752038553 62-63 0.003178420363093872 64-65 0.0043343807554346424 66-67 0.0016335200023986952 68-69 8.679758780823723E-5 70-71 6.792425875461529E-4 72-73 0.0068794503518252665 74-75 0.005837265954096098 76-77 0.004968132975627759 78-79 0.0024913901991439856 80-81 2.298136567454962E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0023909545407813163 90-91 2.1748402398607137E-4 92-93 0.0 94-95 1.3580290504636188E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 28.0 20-21 132.0 22-23 250.0 24-25 359.0 26-27 1064.0 28-29 2920.0 30-31 10237.0 32-33 12654.0 34-35 17606.0 36-37 28094.0 38-39 33269.0 40-41 32960.0 42-43 36162.0 44-45 42496.0 46-47 44158.0 48-49 41826.0 50-51 38287.0 52-53 36610.0 54-55 38629.0 56-57 39676.0 58-59 40763.0 60-61 40263.0 62-63 39728.0 64-65 41873.0 66-67 43889.0 68-69 44368.0 70-71 44008.0 72-73 41078.0 74-75 41169.0 76-77 42748.0 78-79 43572.0 80-81 43954.0 82-83 41833.0 84-85 41183.0 86-87 42237.0 88-89 43929.0 90-91 43900.0 92-93 43827.0 94-95 50912.0 96-97 159183.0 98-99 347388.0 100-101 3504159.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.10579582669747 #Duplication Level Percentage of deduplicated Percentage of total 1 90.40924423488183 78.75169169169641 2 7.0334624871144475 12.253106947146538 3 1.5501731767545808 4.050872046912226 4 0.5213347130295146 1.8164510028207528 5 0.21342408446127747 0.9295237362791935 6 0.10121040199872137 0.5289607567223159 7 0.055967749588436304 0.3412580757971045 8 0.033660998406688285 0.2345654443628623 9 0.020731350407834092 0.1625238698252866 >10 0.05906389060897962 0.7492759951824153 >50 9.618489824234748E-4 0.0571352927958025 >100 7.339691243166634E-4 0.11041539236813148 >500 3.109464095001391E-5 0.014219748090955981 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.7854548063067945E-5 0.0 0.0 0.0 3 0.0 3.7854548063067945E-5 0.0 0.0 0.0 4 0.0 1.1356364418920385E-4 0.0 1.8927274031533972E-5 0.0 5 0.0 1.1356364418920385E-4 0.0 1.8927274031533972E-5 0.0 6 0.0 1.1356364418920385E-4 0.0 1.8927274031533972E-5 0.0 7 0.0 1.1356364418920385E-4 0.0 1.8927274031533972E-5 0.0 8 0.0 1.324909182207378E-4 0.0 1.8927274031533972E-5 0.0 9 0.0 3.4069093256761156E-4 0.0 1.8927274031533972E-5 0.0 10-11 0.0 3.4069093256761156E-4 0.0 3.7854548063067945E-5 0.0 12-13 0.0 3.5961820659914553E-4 0.0 3.7854548063067945E-5 0.0 14-15 0.0 4.542545767568154E-4 0.0 4.731818507883493E-5 0.0 16-17 0.0 4.7318185078834937E-4 0.0 5.6781822094601924E-5 0.0 18-19 0.0 4.921091248198833E-4 0.0 9.463637015766988E-5 0.0 20-21 0.0 5.299636728829512E-4 0.0 1.1356364418920385E-4 0.0 22-23 0.0 5.583545839302522E-4 0.0 1.324909182207378E-4 0.0 24-25 0.0 5.772818579617862E-4 0.0 2.271272883784077E-4 0.0 26-27 0.0 5.867454949775531E-4 0.0 2.839091104730096E-4 0.0 28-29 0.0 5.867454949775531E-4 0.0 5.772818579617863E-4 0.0 30-31 0.0 7.003091391667571E-4 0.0 0.0017791637589641934 0.0 32-33 0.0 7.003091391667571E-4 0.0 0.003993654820653668 0.0 34-35 0.0 7.38163687229825E-4 0.0 0.006548836814910756 0.0 36-37 0.0 7.76018235292893E-4 0.0 0.010731764375879763 0.0 38-39 0.0 8.328000573874949E-4 0.0 0.021189083278302285 0.0 40-41 0.0 9.085091535136308E-4 0.0 0.03316058410324752 0.0 42-43 0.0 9.558273385924657E-4 0.0 0.04065578461973497 0.0 44-45 0.0 0.0011072455308447373 0.0 0.05061153076032185 0.0 46-47 0.0 0.0012113455380181742 0.0 0.06092689510750786 0.0 48-49 0.0 0.0012113455380181742 0.0 0.07081639578898435 0.0 50-51 0.0 0.0013343728192231454 0.0 0.0810939055881073 0.0 52-53 0.0 0.0013438364562389123 0.0 0.10197068884488927 0.0 54-55 0.0 0.0013438364562389123 0.0 0.128137645193485 0.0 56-57 0.0 0.0013438364562389123 0.0 0.1659827296195372 0.0 58-59 0.0 0.0013627637302704462 0.0 0.19549034983469865 0.0 60-61 0.0 0.0013722273672862133 0.0 0.20888139621200894 0.0 62-63 0.0 0.0014006182783335142 0.0 0.22022829699391355 0.0 64-65 0.0 0.0016466728407434558 0.0 0.22478977003551326 0.0 66-67 0.0 0.0016561364777592227 0.0 0.2299285249350747 0.0 68-69 0.0 0.0017223819368695917 0.0 0.23529440712301458 0.0 70-71 0.0 0.0017413092109011257 0.0 0.24026281655629228 0.0 72-73 0.0 0.0017413092109011257 0.0 0.24430378956202475 0.0 74-75 0.0 0.0017507728479168928 0.0 0.2473321534070702 0.0 76-77 0.0 0.0017980910329957276 0.0 0.2502090990598634 0.0 78-79 0.0 0.0018170183070272616 0.0 0.25195040827076454 0.0 80-81 0.0 0.0018264819440430287 0.0 0.2525844719508209 0.0 82-83 0.0 0.0018548728550903295 0.0 0.253067117438625 0.0 84-85 0.0 0.0018927274031533975 0.0 0.2532279992678931 0.0 86-87 0.0 0.0019211183142006983 0.0 0.25334156291208226 0.0 88 0.0 0.001968436499279533 0.0 0.25334156291208226 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5735 0.0 47.30775 1 GTATCAA 10610 0.0 34.994225 1 TCAACGC 12645 0.0 30.8492 4 ATCAACG 12820 0.0 30.428091 3 CAACGCA 12925 0.0 30.1809 5 TATCAAC 13450 0.0 29.415802 2 AACGCAG 13535 0.0 28.911842 6 ACGCAGA 15670 0.0 24.890884 7 CGCAGAG 15735 0.0 24.81521 8 GCAGAGT 19195 0.0 20.364395 9 GAGTACT 11250 0.0 19.822412 12-13 TACATGG 13420 0.0 19.452734 2 ACATGGG 13670 0.0 18.565638 3 GTACATG 13345 0.0 18.537533 1 CAGAGTA 18600 0.0 18.236692 10-11 AGAGTAC 16950 0.0 17.920017 10-11 CATGGGG 10470 0.0 17.669863 4 GTACTTT 12760 0.0 17.443176 14-15 TGGTATC 2930 0.0 17.352869 2 GTGGTAT 2885 0.0 16.883055 1 >>END_MODULE