##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138858_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4322627 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.242069926459074 18.0 18.0 32.0 18.0 33.0 2 30.470228405087923 32.0 27.0 33.0 27.0 33.0 3 31.00033035466627 33.0 31.0 33.0 28.0 33.0 4 32.33398625419218 33.0 33.0 33.0 31.0 33.0 5 32.79066387176132 33.0 33.0 33.0 32.0 34.0 6 37.15285774136885 38.0 37.0 38.0 36.0 38.0 7 37.1445507558251 38.0 38.0 38.0 36.0 38.0 8 37.45207185352796 38.0 38.0 38.0 37.0 38.0 9 37.50318799193176 38.0 38.0 38.0 37.0 38.0 10-11 37.53378165638627 38.0 38.0 38.0 37.0 38.0 12-13 37.552087307093586 38.0 38.0 38.0 37.5 38.0 14-15 37.56332156348443 38.0 38.0 38.0 38.0 38.0 16-17 37.56809932941241 38.0 38.0 38.0 38.0 38.0 18-19 37.566745870046155 38.0 38.0 38.0 38.0 38.0 20-21 37.56101941409787 38.0 38.0 38.0 38.0 38.0 22-23 37.56886778362629 38.0 38.0 38.0 38.0 38.0 24-25 37.53567722984593 38.0 38.0 38.0 38.0 38.0 26-27 37.53547062781652 38.0 38.0 38.0 38.0 38.0 28-29 37.52638298213638 38.0 38.0 38.0 38.0 38.0 30-31 37.51783580419115 38.0 38.0 38.0 37.5 38.0 32-33 37.51684228267024 38.0 38.0 38.0 38.0 38.0 34-35 37.502177126101806 38.0 38.0 38.0 37.5 38.0 36-37 37.48053921569891 38.0 38.0 38.0 37.0 38.0 38-39 37.46007730578195 38.0 38.0 38.0 37.0 38.0 40-41 37.44242662035742 38.0 38.0 38.0 37.0 38.0 42-43 37.42292727220975 38.0 38.0 38.0 37.0 38.0 44-45 37.39223246086675 38.0 38.0 38.0 37.0 38.0 46-47 37.357802797441266 38.0 38.0 38.0 37.0 38.0 48-49 37.3138099364959 38.0 38.0 38.0 37.0 38.0 50-51 37.29542207126539 38.0 38.0 38.0 37.0 38.0 52-53 37.285596111335025 38.0 38.0 38.0 37.0 38.0 54-55 37.265573689052346 38.0 38.0 38.0 37.0 38.0 56-57 37.236846554465146 38.0 38.0 38.0 37.0 38.0 58-59 37.24091552521237 38.0 38.0 38.0 37.0 38.0 60-61 37.25284805149114 38.0 38.0 38.0 37.0 38.0 62-63 37.2554576525705 38.0 38.0 38.0 37.0 38.0 64-65 37.26146643436586 38.0 38.0 38.0 37.0 38.0 66-67 37.26897247833587 38.0 38.0 38.0 37.0 38.0 68-69 37.2660673768754 38.0 38.0 38.0 37.0 38.0 70-71 37.23664973298989 38.0 38.0 38.0 37.0 38.0 72-73 37.21457151155764 38.0 38.0 38.0 37.0 38.0 74-75 37.192732727735105 38.0 38.0 38.0 36.0 38.0 76-77 37.19223973278598 38.0 38.0 38.0 36.0 38.0 78-79 37.196739659626374 38.0 38.0 38.0 36.0 38.0 80-81 37.184624670107596 38.0 38.0 38.0 36.0 38.0 82-83 37.169582609335606 38.0 38.0 38.0 36.0 38.0 84-85 37.178274515665365 38.0 38.0 38.0 36.0 38.0 86-87 37.154121626858434 38.0 38.0 38.0 36.0 38.0 88-89 37.11141725792244 38.0 38.0 38.0 36.0 38.0 90-91 37.1184150000907 38.0 38.0 38.0 36.0 38.0 92-93 37.099257017708844 38.0 38.0 38.0 36.0 38.0 94-95 37.06105161368169 38.0 38.0 38.0 36.0 38.0 96-97 37.01244167195618 38.0 38.0 38.0 36.0 38.0 98-99 37.061715969082265 38.0 38.0 38.0 36.0 38.0 100 35.36472662514649 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 20.0 20 37.0 21 110.0 22 263.0 23 678.0 24 1424.0 25 2740.0 26 4682.0 27 7895.0 28 12390.0 29 18465.0 30 26226.0 31 34967.0 32 46207.0 33 61735.0 34 92780.0 35 173170.0 36 607956.0 37 3230879.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.233231782432306 23.517920930952403 14.41560884156787 23.83323844504742 2 13.938746044939801 20.921559968047205 42.16540080835103 22.974293178661956 3 17.75059471936857 26.094687327867984 30.871990574250336 25.282727378513115 4 12.388924605338374 18.044952756737974 39.30919785584091 30.256924782082745 5 13.129706210752174 37.806804568214346 35.595160258145484 13.468328962888002 6 29.62027231607468 38.290260730519236 18.878625575576315 13.210841377829762 7 26.23099332882527 32.97013598443724 23.32565358981934 17.473217096918148 8 23.922119581448968 37.43980223137458 21.271925613752934 17.36615257342352 9 25.41348707938184 17.211297021764086 21.539036687421024 35.83617921143305 10-11 23.86840500792747 27.185323552705743 29.097494312774884 19.848777126591898 12-13 24.68871359939222 24.677944685026027 29.2845184190077 21.34882329657405 14-15 21.858305146384364 26.045538974332043 27.010646535081563 25.085509344202034 16-17 21.371876407564198 29.21726764765963 27.699220867310547 21.711635077465623 18-19 21.41098457026248 28.3518911069588 29.513048430965704 20.72407589181301 20-21 22.26240006995811 27.512451167836666 29.34180727210433 20.883341490100893 22-23 21.9742272119665 27.352002306091013 29.250490345094676 21.423280136847808 24-25 21.73107404865009 27.40459663050728 29.364893725563963 21.499435595278666 26-27 21.573075616225424 27.667066992465 29.25397449938933 21.505882891920248 28-29 21.509659824520007 27.76428090917602 29.284203317193796 21.441855949110177 30-31 21.82794190539813 27.554670604849186 29.218312548717112 21.399074941035572 32-33 21.594253047412685 27.68628094641733 29.158515605058245 21.560950401111747 34-35 21.693672580873425 27.7077490819572 29.201035079290595 21.39754325787878 36-37 21.70502238106383 27.63184169473769 29.199117914186974 21.464018010011507 38-39 21.506135187100764 27.728417125835144 29.17855439232223 21.586893294741863 40-41 21.828672095540636 27.576510097186752 29.213108065721922 21.381709741550694 42-43 21.636433799264328 27.58883142113898 29.072917010298386 21.701817769298298 44-45 21.686953081154225 27.69401890954819 28.984204986722435 21.634823022575148 46-47 21.666694394434 27.688912292731928 28.938325488786287 21.706067824047786 48-49 21.677375994109717 27.909782685211425 28.767635253814767 21.645206066864088 50-51 21.631628414593248 28.048153879040687 28.496115468114773 21.82410223825129 52-53 21.64890571045873 27.80766064121312 28.457254506801675 22.086179141526475 54-55 21.842562431204332 27.552835011770355 28.791762682905325 21.81283987411999 56-57 21.719147097176382 27.306128440926926 28.838512466478715 22.136211995417984 58-59 21.50810628243815 27.135326261414725 28.895253131319325 22.461314324827796 60-61 21.720062312476994 27.330936508939757 29.24191443559991 21.70708674298334 62-63 21.27262982915784 27.538974957036732 29.199975458488296 21.98841975531713 64-65 21.051189315575012 27.90517829843345 28.89192582769041 22.15170655830112 66-67 21.15425652588079 28.520906267654368 28.326094181628463 21.998743024836383 68-69 21.308926541033337 28.48879808225138 28.144587450075733 22.057687926639545 70-71 21.319476748101234 27.95115272685455 28.110634945137598 22.618735579906613 72-73 21.51568132130287 27.47943960967448 28.12179045166519 22.88308861735746 74-75 21.63655465149108 27.515178863537194 28.26655617982788 22.581710305143847 76-77 21.906596936231306 27.421258147538772 27.637958025195104 23.034186891034818 78-79 22.130513844889617 27.523132143098035 27.207170433637156 23.139183578375192 80-81 21.974136932116842 27.868197837571163 27.315189077517292 22.842476152794706 82-83 21.976874250551877 27.61901290968917 27.38714982824348 23.016963011515468 84-85 22.028863682160104 28.038551109595332 27.30550082295973 22.627084385284835 86-87 22.522821349690407 27.941870177306345 27.32906620966032 22.20624226334293 88-89 22.297177265175332 28.063249855908108 27.649401581570675 21.99017129734589 90-91 22.25537641339584 27.65644059218289 27.512239566009466 22.575943428411804 92-93 22.2187278523318 27.21518422541958 27.727398079705413 22.838689842543214 94-95 21.53538143187669 27.734347722860775 28.29992283842856 22.430348006833977 96-97 21.626240144410815 27.571416842100287 28.583468009649437 22.218875003839457 98-99 22.807945638483076 29.45125033093456 28.874405320625446 18.86639870995692 100 21.753853478748184 30.570698678549423 22.6065417610191 25.068906081683295 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 686.0 1 741.5 2 1115.5 3 1533.0 4 1877.0 5 2354.0 6 2787.0 7 3726.0 8 4917.5 9 5638.5 10 5965.0 11 6286.0 12 6945.5 13 8300.0 14 10709.5 15 13161.5 16 14571.0 17 14860.5 18 14168.0 19 12971.5 20 11966.0 21 11743.0 22 12828.5 23 15478.5 24 20161.5 25 26347.5 26 34341.5 27 43702.0 28 53320.0 29 63742.0 30 73546.0 31 83248.0 32 93909.5 33 104267.0 34 114795.0 35 124992.5 36 135178.5 37 144316.5 38 151628.5 39 158463.5 40 165921.5 41 171534.0 42 174956.0 43 178983.0 44 181790.0 45 183308.5 46 183202.0 47 182480.0 48 180854.0 49 176475.0 50 170349.0 51 163084.0 52 154822.5 53 145057.0 54 134912.5 55 123875.5 56 111266.5 57 99022.5 58 87144.0 59 75126.5 60 62571.0 61 49827.0 62 38387.5 63 29275.0 64 21788.0 65 15724.0 66 11309.0 67 8326.5 68 6284.5 69 4478.0 70 3101.5 71 2197.0 72 1531.0 73 985.0 74 601.0 75 394.0 76 249.5 77 144.0 78 87.0 79 57.0 80 42.5 81 29.5 82 23.0 83 19.0 84 13.0 85 8.5 86 5.0 87 3.5 88 2.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.00955437515196199 6 6.940224081328321E-5 7 0.0 8 0.0 9 2.3134080271094407E-5 10-11 1.1567040135547204E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.1644774240208443E-4 26-27 0.0 28-29 4.976194118786614E-4 30-31 0.0022356230901639535 32-33 1.509005746293882E-4 34-35 3.4915408693587606E-5 36-37 2.687426373280719E-4 38-39 6.571380861862417E-4 40-41 4.4808055262010387E-4 42-43 1.3053044130087587E-4 44-45 0.0 46-47 0.0012899273192260292 48-49 4.863176356890033E-5 50-51 0.0017282264609121138 52-53 0.0013148505488026442 54-55 0.002570068174439996 56-57 0.0023133504562283945 58-59 0.0033983062398443282 60-61 0.0025157348058602496 62-63 0.0027114886147466995 64-65 0.003880366780331177 66-67 0.0014234500947928796 68-69 6.413699251123648E-5 70-71 5.439071648890831E-4 72-73 0.006234884978789627 74-75 0.005762249328968265 76-77 0.004537941717391362 78-79 0.0024049917417420445 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020725116853707324 90-91 1.709383933756814E-4 92-93 0.0 94-95 8.728676933336476E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 21.0 20-21 93.0 22-23 207.0 24-25 274.0 26-27 940.0 28-29 2616.0 30-31 8621.0 32-33 10543.0 34-35 14751.0 36-37 23192.0 38-39 14528.0 40-41 26483.0 42-43 29251.0 44-45 34534.0 46-47 35505.0 48-49 33710.0 50-51 17735.0 52-53 2903.0 54-55 2693.0 56-57 2533.0 58-59 18385.0 60-61 33444.0 62-63 32633.0 64-65 34038.0 66-67 35804.0 68-69 36916.0 70-71 36632.0 72-73 33415.0 74-75 34283.0 76-77 35409.0 78-79 36349.0 80-81 36042.0 82-83 34508.0 84-85 33569.0 86-87 34648.0 88-89 36249.0 90-91 36316.0 92-93 36178.0 94-95 42017.0 96-97 143491.0 98-99 324925.0 100-101 2936243.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.9973541465662 #Duplication Level Percentage of deduplicated Percentage of total 1 91.53265577426416 80.5463152614366 2 6.197161655869172 10.906676578700802 3 1.324858136715897 3.4975203195164575 4 0.4535775895794176 1.5965451113266342 5 0.19845307987071967 0.8731672975430254 6 0.09990394442140392 0.5274769666733489 7 0.052103427726837445 0.3209474647349972 8 0.03765733450305944 0.26509966403851426 9 0.024616709051223803 0.19495847378731707 >10 0.07693282782172771 1.0028382760890446 >50 0.0011495558544523188 0.07149276299575673 >100 8.195002675267467E-4 0.13070011132733658 >500 1.1046405448765671E-4 0.06626171183018904 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.3134080271094407E-5 2 0.0 2.3134080271094407E-5 0.0 0.0 2.3134080271094407E-5 3 0.0 2.3134080271094407E-5 0.0 0.0 2.3134080271094407E-5 4 0.0 4.6268160542188814E-5 0.0 2.3134080271094407E-5 4.6268160542188814E-5 5 0.0 4.6268160542188814E-5 0.0 4.6268160542188814E-5 4.6268160542188814E-5 6 0.0 4.6268160542188814E-5 0.0 4.6268160542188814E-5 4.6268160542188814E-5 7 0.0 4.6268160542188814E-5 0.0 4.6268160542188814E-5 6.940224081328322E-5 8 0.0 4.6268160542188814E-5 0.0 4.6268160542188814E-5 6.940224081328322E-5 9 0.0 9.253632108437763E-5 0.0 4.6268160542188814E-5 6.940224081328322E-5 10-11 0.0 9.253632108437763E-5 0.0 4.6268160542188814E-5 6.940224081328322E-5 12-13 0.0 9.253632108437763E-5 0.0 4.6268160542188814E-5 9.253632108437763E-5 14-15 0.0 1.3880448162656645E-4 0.0 4.6268160542188814E-5 1.7350560203320805E-4 16-17 1.1567040135547204E-5 1.3880448162656645E-4 0.0 5.7835200677736016E-5 2.0820672243984965E-4 18-19 2.3134080271094407E-5 1.7350560203320805E-4 0.0 8.096928094883043E-5 3.007430435242273E-4 20-21 2.3134080271094407E-5 2.1977376257539686E-4 0.0 1.0410336121992482E-4 3.701452843375105E-4 22-23 2.3134080271094407E-5 2.776089632531329E-4 0.0 1.1567040135547203E-4 4.048464047441521E-4 24-25 2.3134080271094407E-5 3.1231008365977447E-4 0.0 1.3880448162656645E-4 4.8581568569298255E-4 26-27 2.3134080271094407E-5 3.238771237953217E-4 0.0 1.8507264216875523E-4 5.08949765964077E-4 28-29 2.3134080271094407E-5 3.470112040664161E-4 0.0 4.279804850152465E-4 5.08949765964077E-4 30-31 4.6268160542188814E-5 4.048464047441521E-4 0.0 0.0014458800169434003 5.08949765964077E-4 32-33 4.6268160542188814E-5 4.164134448796993E-4 0.0 0.0029611622747000837 5.08949765964077E-4 34-35 4.6268160542188814E-5 4.8581568569298255E-4 0.0 0.0057603859875025075 5.08949765964077E-4 36-37 4.6268160542188814E-5 5.667849666418129E-4 0.0 0.011231595971616335 5.08949765964077E-4 38-39 4.6268160542188814E-5 5.899190469129073E-4 0.0 0.1719093504945025 5.552179265062658E-4 40-41 4.6268160542188814E-5 6.246201673195489E-4 0.0 0.3378154071586561 5.552179265062658E-4 42-43 6.940224081328322E-5 6.361872074550962E-4 0.0 0.3528294252545964 5.667849666418129E-4 44-45 6.940224081328322E-5 6.940224081328322E-4 0.0 0.37190347443811367 6.014860870484545E-4 46-47 6.940224081328322E-5 7.40290568675021E-4 0.0 0.3930711578861651 6.477542475906434E-4 48-49 6.940224081328322E-5 7.40290568675021E-4 0.0 0.41329034404310155 6.477542475906434E-4 50-51 9.253632108437763E-5 7.865587292172098E-4 0.0 0.4339953458857311 6.477542475906434E-4 52-53 9.253632108437763E-5 8.328268897593986E-4 0.0 0.941256323990018 7.171564884039266E-4 54-55 9.253632108437763E-5 8.675280101660402E-4 0.0 1.6073558972356392 7.981257693527571E-4 56-57 9.253632108437763E-5 9.022291305726818E-4 0.0 2.325692223733392 8.443939298949458E-4 58-59 9.253632108437763E-5 9.484972911148707E-4 0.0 3.0658902560873282 8.790950503015874E-4 60-61 9.253632108437763E-5 9.831984115215124E-4 0.0 3.2599967566019457 8.790950503015874E-4 62-63 9.253632108437763E-5 9.947654516570595E-4 0.0 3.2664511649975814 8.790950503015874E-4 64-65 9.253632108437763E-5 0.0010873017727414372 0.0 3.2722578191456257 8.906620904371346E-4 66-67 9.253632108437763E-5 0.0011220028931480787 0.0 3.277682760969198 9.022291305726818E-4 68-69 9.253632108437763E-5 0.0011335699332836258 0.0 3.2825409178261276 9.369302509793235E-4 70-71 1.1567040135547203E-4 0.0011451369734191731 0.0 3.28671661931506 9.716313713859651E-4 72-73 1.2723744149101924E-4 0.0011567040135547202 0.0 3.2904874743992485 0.001017899531928154 74-75 1.3880448162656645E-4 0.0011682710536902673 0.0 3.2933676673929995 0.001017899531928154 76-77 1.5037152176211366E-4 0.0012492403346390979 0.0 3.29612062294526 0.001017899531928154 78-79 1.6193856189766084E-4 0.0012723744149101923 0.0 3.297774709684643 0.001017899531928154 80-81 1.6193856189766084E-4 0.0012955084951812867 0.0 3.2983299276111495 0.0010410336121992483 82-83 1.7350560203320805E-4 0.0012955084951812867 0.0 3.2987694751363 0.0010988688128769843 84-85 1.8507264216875526E-4 0.0013186425754523811 0.0 3.2989429807383335 0.0011104358530125316 86-87 1.8507264216875526E-4 0.0013417766557234756 0.0 3.299035517059418 0.0011220028931480787 88 1.8507264216875526E-4 0.0014574470570789476 0.0 3.299035517059418 0.0011335699332836258 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5180 0.0 48.94218 1 ATCTCGT 4145 0.0 45.868423 94 GTATCAA 9705 0.0 36.58963 1 TATGCCG 1965 0.0 35.60241 86-87 TATCTCG 4905 0.0 33.018963 94 GCCGTCT 2205 0.0 32.842014 90-91 CCGTCTT 2200 0.0 32.790535 90-91 ATGCCGT 2220 0.0 32.240208 88-89 TGCCGTC 2210 0.0 32.13887 88-89 ATCAACG 11665 0.0 32.04193 3 TCAACGC 11700 0.0 31.908974 4 CAACGCA 12005 0.0 31.098291 5 TCTCGTA 2240 0.0 31.040293 82-83 TATCAAC 12295 0.0 30.611937 2 TCGTATG 2305 0.0 30.487795 84-85 CTCGTAT 2275 0.0 30.330334 82-83 CGTATGC 2310 0.0 30.306133 84-85 AACGCAG 12440 0.0 29.973183 6 ACGCAGA 14405 0.0 25.88451 7 CGCAGAG 14685 0.0 25.361412 8 >>END_MODULE