##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138857_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10137308 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.716531844548868 32.0 30.0 33.0 18.0 34.0 2 31.552576482829565 33.0 32.0 33.0 27.0 34.0 3 32.24711856441572 33.0 33.0 33.0 30.0 34.0 4 32.307880553693344 33.0 33.0 33.0 31.0 34.0 5 32.96952731435209 33.0 33.0 34.0 32.0 34.0 6 36.90283278361474 38.0 37.0 38.0 35.0 38.0 7 37.279012238752145 38.0 38.0 38.0 36.0 38.0 8 37.2381259403384 38.0 38.0 38.0 36.0 38.0 9 37.382262332366736 38.0 38.0 38.0 37.0 38.0 10-11 37.44647513915923 38.0 38.0 38.0 37.0 38.0 12-13 37.46293927342447 38.0 38.0 38.0 37.0 38.0 14-15 37.457862975062014 38.0 38.0 38.0 37.0 38.0 16-17 37.45728417248445 38.0 38.0 38.0 37.0 38.0 18-19 37.45809553187098 38.0 38.0 38.0 37.0 38.0 20-21 37.46068079926286 38.0 38.0 38.0 37.0 38.0 22-23 37.46789294523403 38.0 38.0 38.0 37.0 38.0 24-25 37.430345572568214 38.0 38.0 38.0 37.0 38.0 26-27 37.43730323434258 38.0 38.0 38.0 37.0 38.0 28-29 37.43123691630073 38.0 38.0 38.0 37.0 38.0 30-31 37.4253231639742 38.0 38.0 38.0 37.0 38.0 32-33 37.42549129657663 38.0 38.0 38.0 37.0 38.0 34-35 37.41087022953715 38.0 38.0 38.0 37.0 38.0 36-37 37.387009975815914 38.0 38.0 38.0 37.0 38.0 38-39 37.36428229228185 38.0 38.0 38.0 37.0 38.0 40-41 37.351148902421514 38.0 38.0 38.0 37.0 38.0 42-43 37.33497033208679 38.0 38.0 38.0 37.0 38.0 44-45 37.302738356111405 38.0 38.0 38.0 37.0 38.0 46-47 37.26766828540392 38.0 38.0 38.0 37.0 38.0 48-49 37.22204721650433 38.0 38.0 38.0 37.0 38.0 50-51 37.19811062937667 38.0 38.0 38.0 37.0 38.0 52-53 37.18435975515146 38.0 38.0 38.0 37.0 38.0 54-55 37.15962833812455 38.0 38.0 38.0 37.0 38.0 56-57 37.12251483493347 38.0 38.0 38.0 36.0 38.0 58-59 37.12168081431024 38.0 38.0 38.0 36.0 38.0 60-61 37.13208707820188 38.0 38.0 38.0 36.0 38.0 62-63 37.13772113644469 38.0 38.0 38.0 36.0 38.0 64-65 37.14186154411049 38.0 38.0 38.0 36.0 38.0 66-67 37.14750351583171 38.0 38.0 38.0 36.0 38.0 68-69 37.14432349019655 38.0 38.0 38.0 36.0 38.0 70-71 37.107588621644 38.0 38.0 38.0 36.0 38.0 72-73 37.08290600440084 38.0 38.0 38.0 36.0 38.0 74-75 37.06373490861706 38.0 38.0 38.0 36.0 38.0 76-77 37.064608898812835 38.0 38.0 38.0 36.0 38.0 78-79 37.06432792424627 38.0 38.0 38.0 36.0 38.0 80-81 37.05169252554215 38.0 38.0 38.0 36.0 38.0 82-83 37.050878193581006 38.0 38.0 38.0 36.0 38.0 84-85 37.03926503557513 38.0 38.0 38.0 36.0 38.0 86-87 37.007281081722155 38.0 38.0 38.0 36.0 38.0 88-89 36.96607728249915 38.0 38.0 38.0 36.0 38.0 90-91 36.96850913429922 38.0 38.0 38.0 36.0 38.0 92-93 36.9441894914396 38.0 38.0 38.0 35.5 38.0 94-95 36.928338711715256 38.0 38.0 38.0 35.5 38.0 96-97 36.91832724380904 38.0 38.0 38.0 35.0 38.0 98-99 36.960131608144536 38.0 38.0 38.0 35.0 38.0 100 35.27236538944047 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 32.0 20 143.0 21 394.0 22 1050.0 23 2230.0 24 4617.0 25 8509.0 26 14563.0 27 23058.0 28 35264.0 29 52084.0 30 73070.0 31 97032.0 32 126573.0 33 168476.0 34 244485.0 35 428197.0 36 1237142.0 37 7620382.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.11185967714506 19.220033563151084 14.135172769733344 23.532933989970513 2 14.270928731769816 20.268980680077988 43.18303241846849 22.27705816968371 3 18.21246824107544 26.041331682928053 30.108348291282066 25.637851784714442 4 12.261105216493373 18.06157019200758 38.9098466772441 30.767477914254947 5 13.42039630561459 37.48415514477233 35.602246558525565 13.493201991087519 6 30.006774976857752 37.71860841896426 18.88896692848513 13.385649675692868 7 26.64249719945374 32.66830799656083 22.927980485549025 17.761214318436412 8 24.123110395777655 37.10310469012089 21.09741560579988 17.676369308301574 9 25.46479059971253 17.32863570176971 21.30905180241656 35.8975218961012 10-11 24.133248603401277 26.88548842409528 28.860810864266025 20.120452108237423 12-13 25.038767688621082 24.296647591254008 29.021457175810383 21.643127544314524 14-15 22.11301067305048 25.68994648283351 26.790682496773304 25.406360347342705 16-17 21.67952774050073 28.8549780671555 27.459686536109977 22.005807656233785 18-19 21.656133955878623 27.940243109906497 29.272189421491383 21.131433512723497 20-21 22.45647270321732 27.096480863259902 29.17927945008889 21.26776698343389 22-23 22.17341790658127 27.038383900961776 29.06373614535634 21.72446204710061 24-25 21.96982372757083 27.115522695689386 29.167387676813554 21.747265899926223 26-27 21.924126047426657 27.290468912572603 29.099217882948686 21.68618715705205 28-29 21.812325056313103 27.383327531691325 29.134059777211025 21.670287634784547 30-31 22.102676274883784 27.206637009581957 29.056219628057384 21.634467087476875 32-33 21.8976579742486 27.37626500412128 28.99377495573528 21.732302065894842 34-35 22.058296049764667 27.33901348160946 29.032591531068068 21.570098937557805 36-37 21.973129352160683 27.30335679741408 29.006827852852666 21.716685997572565 38-39 21.802083467832787 27.36209814941766 29.140984152636435 21.694834230113123 40-41 22.09740874427052 27.191802457178827 29.004571501346682 21.706217297203967 42-43 21.998466793014373 27.275589221045475 28.8513976677004 21.874546318239748 44-45 22.013279750949604 27.44913222317944 28.744490224967695 21.793097800903265 46-47 22.073334805383098 27.340466606880064 28.50708660381261 22.07911198392423 48-49 22.04824667645089 27.399811655835364 28.532612426828813 22.019329240884932 50-51 21.96227746138306 27.576859795124083 28.477649315989094 21.983213427503763 52-53 22.15397802041357 27.50664653722652 28.36196023680288 21.977415205557023 54-55 22.1021030686143 27.439575049791245 28.37361875089726 22.084703130697196 56-57 22.163298382697914 27.528273977830025 28.27501233001339 22.03341530945867 58-59 22.05633386699115 27.601845163142325 28.393707168935883 21.948113800930642 60-61 22.12430469671765 27.616524313578832 28.32473780827786 21.93443318142565 62-63 22.07532469588031 27.709632251027376 28.249945625907884 21.96509742718443 64-65 22.01692556805573 27.6888788937394 28.269964317829764 22.024231220375114 66-67 22.123980902730775 27.68906531764944 28.12527046105871 22.061683318561073 68-69 22.0858504190257 27.649964044165387 28.19030920002494 22.073876336783965 70-71 22.10717585968132 27.395506658481576 28.234849090520264 22.26246839131684 72-73 22.16615200892205 27.394978105560586 28.21409161348968 22.224778272027688 74-75 22.062558530698272 27.53381262353285 28.168814613864214 22.234814231904668 76-77 22.159516075232137 27.482847498332053 28.059932553307494 22.29770387312832 78-79 22.193728287295677 27.533035159871194 27.991635811681174 22.281600741151955 80-81 22.145789144526766 27.56116432019869 27.98907584158257 22.303970693691976 82-83 22.265271546509847 27.516056572954916 28.050820428078264 22.167851452456965 84-85 22.368378217842398 27.5370424092885 27.917231329742958 22.17734804312615 86-87 22.13372866616821 27.580573494104073 28.0066216954518 22.279076144275923 88-89 22.310286673774694 27.55574525546604 27.930265016277446 22.203703054481817 90-91 22.35136589847695 27.569061190677147 27.915057279373954 22.164515631471954 92-93 22.3590245828522 27.60838928614274 27.915089638585577 22.11749649241948 94-95 22.24265959935863 27.718713694686432 27.895575369262467 22.143051336692476 96-97 22.34435489501713 27.77875553160219 27.981948805066214 21.894940768314466 98-99 23.373452914338845 29.71162365496805 28.168353429576676 18.746570001116424 100 22.318606052307672 30.590753708659392 22.108822413239572 24.981817825793364 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1771.0 1 1553.5 2 2210.0 3 3450.5 4 4314.5 5 5679.5 6 7099.5 7 9328.0 8 12642.0 9 14828.0 10 15037.5 11 14879.5 12 16083.0 13 19093.0 14 24556.5 15 30402.0 16 34459.5 17 36849.5 18 36533.0 19 33988.0 20 31095.5 21 29509.0 22 31254.0 23 37158.5 24 47302.0 25 61570.0 26 80237.0 27 101221.0 28 121428.0 29 143467.5 30 164980.0 31 185810.5 32 209151.5 33 232966.5 34 257237.5 35 280768.0 36 304888.5 37 327535.0 38 344638.5 39 359194.0 40 376105.5 41 390282.0 42 398972.5 43 412529.0 44 423901.0 45 431300.0 46 435756.0 47 434183.0 48 430301.5 49 421645.0 50 411661.0 51 396301.0 52 375754.5 53 355055.5 54 333791.5 55 309296.5 56 283109.0 57 256861.5 58 228709.0 59 198379.0 60 164633.0 61 132041.0 62 103641.0 63 80300.0 64 60510.0 65 44143.0 66 32207.0 67 24087.0 68 18255.5 69 13239.5 70 9436.5 71 6682.5 72 4612.0 73 2980.0 74 1888.0 75 1190.5 76 736.5 77 442.0 78 297.5 79 208.0 80 134.5 81 84.0 82 61.0 83 47.0 84 35.0 85 22.0 86 11.5 87 5.5 88 4.5 89 5.0 90 4.0 91 2.0 92 1.0 93 1.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.007270174685429307 6 3.9458207247920256E-5 7 0.0 8 0.0 9 9.864551811980064E-6 10-11 9.864551811980064E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.919318504914317E-4 26-27 0.0 28-29 7.106015133246173E-4 30-31 0.002355981144643314 32-33 1.0391640133345525E-4 34-35 5.456431485871613E-5 36-37 2.4392774242982694E-4 38-39 4.8044224708844495E-4 40-41 6.191611343193063E-4 42-43 1.468489903220439E-4 44-45 0.0 46-47 0.0014699722195809551 48-49 5.699545062313126E-5 50-51 0.0017803085655865936 52-53 0.0014457070753535121 54-55 0.0024932054857084536 56-57 0.0021915988497465426 58-59 0.00356260726107721 60-61 0.0025616671264669607 62-63 0.0028270999690383435 64-65 0.0041257629360821405 66-67 0.0016310616269451382 68-69 1.1755747146866172E-4 70-71 6.667053506437915E-4 72-73 0.006564934704566245 74-75 0.005901616939504284 76-77 0.004722658404141784 78-79 0.0027106298432383632 80-81 2.363563866686489E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020838226230570807 90-91 3.0947676021406384E-4 92-93 1.2503070285196908E-5 94-95 1.0106732144815322E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 62.0 20-21 280.0 22-23 535.0 24-25 738.0 26-27 2209.0 28-29 6104.0 30-31 17975.0 32-33 22765.0 34-35 31118.0 36-37 50219.0 38-39 58264.0 40-41 57695.0 42-43 64719.0 44-45 76266.0 46-47 79459.0 48-49 74591.0 50-51 67629.0 52-53 63961.0 54-55 69144.0 56-57 70344.0 58-59 72834.0 60-61 71371.0 62-63 71429.0 64-65 75180.0 66-67 80072.0 68-69 81919.0 70-71 85053.0 72-73 74805.0 74-75 73582.0 76-77 76929.0 78-79 78376.0 80-81 79030.0 82-83 75190.0 84-85 74088.0 86-87 75815.0 88-89 79061.0 90-91 80439.0 92-93 80789.0 94-95 94766.0 96-97 310367.0 98-99 688895.0 100-101 6843241.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.37729237499892 #Duplication Level Percentage of deduplicated Percentage of total 1 87.97590430515511 72.47216790900688 2 8.067162642947888 13.291020313495745 3 2.154538091294946 5.3245504283902765 4 0.8236413834914256 2.7139738824008703 5 0.3817876348429357 1.5725315810307918 6 0.2046554186614177 1.0115375555519648 7 0.12242336254958841 0.7059433591194555 8 0.07160251334887963 0.47187369415403346 9 0.047428478998318 0.3516326713211344 >10 0.14789605645649764 1.8136857084395324 >50 0.0021418196756264533 0.12154029043790703 >100 7.764506367492357E-4 0.10628494318324205 >500 0.0 0.0 >1k 4.184194060400886E-5 0.04325766346822253 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.864551811980064E-6 0.0 0.0 0.0 3 0.0 9.864551811980064E-6 0.0 0.0 0.0 4 0.0 2.959365543594019E-5 0.0 9.864551811980064E-6 0.0 5 0.0 2.959365543594019E-5 0.0 9.864551811980064E-6 0.0 6 0.0 2.959365543594019E-5 0.0 2.959365543594019E-5 9.864551811980064E-6 7 0.0 2.959365543594019E-5 0.0 6.905186268386045E-5 9.864551811980064E-6 8 0.0 5.918731087188038E-5 0.0 7.891641449584051E-5 9.864551811980064E-6 9 0.0 9.864551811980065E-5 0.0 1.5783282899168102E-4 9.864551811980064E-6 10-11 0.0 9.864551811980065E-5 0.0 1.972910362396013E-4 9.864551811980064E-6 12-13 0.0 9.864551811980065E-5 0.0 2.170201398635614E-4 1.4796827717970096E-5 14-15 4.932275905990032E-6 1.7756193261564114E-4 0.0 2.5154607120549165E-4 1.9729103623960128E-5 16-17 9.864551811980064E-6 1.8742648442762123E-4 0.0 2.910042784534119E-4 1.9729103623960128E-5 18-19 9.864551811980064E-6 1.8742648442762123E-4 0.0 3.255302097953421E-4 1.9729103623960128E-5 20-21 9.864551811980064E-6 1.8742648442762123E-4 0.0 3.7485296885524246E-4 2.959365543594019E-5 22-23 9.864551811980064E-6 2.170201398635614E-4 0.0 4.1924345200915273E-4 4.932275905990032E-5 24-25 9.864551811980064E-6 2.5154607120549165E-4 0.0 4.488371074450929E-4 5.918731087188038E-5 26-27 9.864551811980064E-6 2.762074507354418E-4 0.0 5.030921424109833E-4 5.918731087188038E-5 28-29 1.9729103623960128E-5 2.762074507354418E-4 0.0 7.497059377104848E-4 5.918731087188038E-5 30-31 1.9729103623960128E-5 3.0086883026539195E-4 0.0 0.0017016351875665612 5.918731087188038E-5 32-33 1.9729103623960128E-5 3.05801106171382E-4 0.0 0.0037633265162703945 5.918731087188038E-5 34-35 1.9729103623960128E-5 3.551238652312823E-4 0.0 0.006490875092282883 5.918731087188038E-5 36-37 1.9729103623960128E-5 4.093789001971727E-4 0.0 0.010821413337742131 5.918731087188038E-5 38-39 1.9729103623960128E-5 4.1924345200915273E-4 0.0 0.020365367215832843 6.905186268386045E-5 40-41 1.9729103623960128E-5 4.6856621106905304E-4 0.0 0.03098948951733537 6.905186268386045E-5 42-43 1.9729103623960128E-5 5.080244183169733E-4 0.0 0.038363241996790476 6.905186268386045E-5 44-45 1.9729103623960128E-5 5.524149014708836E-4 0.0 0.04686648565871729 6.905186268386045E-5 46-47 1.9729103623960128E-5 5.820085569068238E-4 0.0 0.05642030408861998 6.905186268386045E-5 48-49 1.9729103623960128E-5 5.918731087188038E-4 0.0 0.06561899865329138 6.905186268386045E-5 50-51 1.9729103623960128E-5 6.461281436846942E-4 0.0 0.0746697249407831 6.905186268386045E-5 52-53 1.9729103623960128E-5 6.510604195906842E-4 0.0 0.09603634416553192 7.891641449584051E-5 54-55 1.9729103623960128E-5 6.510604195906842E-4 0.0 0.12213301598412518 9.37132422138106E-5 56-57 1.9729103623960128E-5 6.609249714026643E-4 0.0 0.16297226048572264 9.864551811980065E-5 58-59 1.9729103623960128E-5 6.609249714026643E-4 0.0 0.1936263552414507 1.085100699317807E-4 60-61 1.9729103623960128E-5 6.855863509326144E-4 0.0 0.20675114142729017 1.085100699317807E-4 62-63 1.9729103623960128E-5 7.003831786505845E-4 0.0 0.21700534303584346 1.085100699317807E-4 64-65 1.9729103623960128E-5 8.483514558302855E-4 0.0 0.22175019245740585 1.085100699317807E-4 66-67 1.9729103623960128E-5 8.483514558302855E-4 0.0 0.22674165567426777 1.1344234583777074E-4 68-69 1.9729103623960128E-5 8.730128353602357E-4 0.0 0.23204878454911304 1.1837462174376077E-4 70-71 1.9729103623960128E-5 9.026064907961759E-4 0.0 0.2367196498320856 1.1837462174376077E-4 72-73 2.4661379529950158E-5 9.17403318514146E-4 0.0 0.24030541441574035 1.381037253677209E-4 74-75 2.959365543594019E-5 9.32200146232116E-4 0.0 0.24307735347490675 1.381037253677209E-4 76-77 3.9458207247920256E-5 9.716583534800363E-4 0.0 0.24601205763897083 1.4796827717970096E-4 78-79 3.9458207247920256E-5 9.963197330099865E-4 0.0 0.24766930234338347 1.4796827717970096E-4 80-81 3.9458207247920256E-5 9.963197330099865E-4 0.0 0.2482167849689484 1.5783282899168102E-4 82-83 3.9458207247920256E-5 0.0010012520089159767 0.0 0.24856697655827364 1.7756193261564114E-4 84-85 3.9458207247920256E-5 0.0010160488366339467 0.0 0.2488481162849151 1.7756193261564114E-4 86-87 4.932275905990032E-5 0.0010160488366339467 0.0 0.24893689725122292 1.7756193261564114E-4 88 4.932275905990032E-5 0.0010357779402579068 0.0 0.2489418295271289 1.7756193261564114E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12875 0.0 49.926785 1 GTATCAA 23155 0.0 38.817173 1 ATCAACG 27430 0.0 32.061615 3 TCAACGC 27645 0.0 31.858953 4 CAACGCA 28170 0.0 31.265203 5 TATCAAC 28925 0.0 30.597872 2 AACGCAG 29440 0.0 29.987175 6 ACGCAGA 33265 0.0 26.50028 7 CGCAGAG 33870 0.0 26.001514 8 GTGGTAT 6405 0.0 22.436628 1 TGGTATC 6005 0.0 21.924955 2 GCAGAGT 40345 0.0 21.828512 9 GAGTACT 23240 0.0 20.613422 12-13 GTACATG 29710 0.0 20.549913 1 TACATGG 29035 0.0 20.19781 2 ACATGGG 29245 0.0 19.464285 3 CAGAGTA 38870 0.0 19.375084 10-11 AGAGTAC 35890 0.0 18.820112 10-11 GTACTTT 26445 0.0 18.07482 14-15 CATGGGG 21445 0.0 17.515337 4 >>END_MODULE