##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138856_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5792095 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.327845624079025 32.0 28.0 33.0 18.0 34.0 2 31.426851769523807 33.0 32.0 33.0 27.0 34.0 3 32.170791397585845 33.0 33.0 33.0 29.0 34.0 4 32.23250240198063 33.0 33.0 33.0 31.0 34.0 5 32.94915397623831 33.0 33.0 34.0 32.0 34.0 6 36.889466419318055 38.0 37.0 38.0 35.0 38.0 7 37.2586684092716 38.0 38.0 38.0 36.0 38.0 8 37.218050290956896 38.0 38.0 38.0 36.0 38.0 9 37.360355277321936 38.0 38.0 38.0 37.0 38.0 10-11 37.42963651321327 38.0 38.0 38.0 37.0 38.0 12-13 37.45115463403138 38.0 38.0 38.0 37.0 38.0 14-15 37.44564773195191 38.0 38.0 38.0 37.0 38.0 16-17 37.44515361022221 38.0 38.0 38.0 37.0 38.0 18-19 37.44733796665973 38.0 38.0 38.0 37.0 38.0 20-21 37.449403433933114 38.0 38.0 38.0 37.0 38.0 22-23 37.45742510677614 38.0 38.0 38.0 37.0 38.0 24-25 37.41849201347216 38.0 38.0 38.0 37.0 38.0 26-27 37.426866499214526 38.0 38.0 38.0 37.0 38.0 28-29 37.42393155161643 38.0 38.0 38.0 37.0 38.0 30-31 37.41805561565086 38.0 38.0 38.0 37.0 38.0 32-33 37.416441726218665 38.0 38.0 38.0 37.0 38.0 34-35 37.4043111923427 38.0 38.0 38.0 37.0 38.0 36-37 37.383421514654856 38.0 38.0 38.0 37.0 38.0 38-39 37.36345722650677 38.0 38.0 38.0 37.0 38.0 40-41 37.34503144443529 38.0 38.0 38.0 37.0 38.0 42-43 37.32746907857033 38.0 38.0 38.0 37.0 38.0 44-45 37.298919129310114 38.0 38.0 38.0 37.0 38.0 46-47 37.268762562599036 38.0 38.0 38.0 37.0 38.0 48-49 37.22508697316783 38.0 38.0 38.0 37.0 38.0 50-51 37.202679267237926 38.0 38.0 38.0 37.0 38.0 52-53 37.18608790295626 38.0 38.0 38.0 37.0 38.0 54-55 37.15946413265229 38.0 38.0 38.0 36.5 38.0 56-57 37.1215397270292 38.0 38.0 38.0 36.0 38.0 58-59 37.12218900016525 38.0 38.0 38.0 36.0 38.0 60-61 37.132901768990514 38.0 38.0 38.0 36.0 38.0 62-63 37.137062566003976 38.0 38.0 38.0 36.0 38.0 64-65 37.139699686165045 38.0 38.0 38.0 36.0 38.0 66-67 37.1422648242979 38.0 38.0 38.0 36.0 38.0 68-69 37.13851539162137 38.0 38.0 38.0 36.0 38.0 70-71 37.1008161234011 38.0 38.0 38.0 36.0 38.0 72-73 37.074563893434615 38.0 38.0 38.0 36.0 38.0 74-75 37.054157989669434 38.0 38.0 38.0 36.0 38.0 76-77 37.05175304805009 38.0 38.0 38.0 36.0 38.0 78-79 37.05255964294808 38.0 38.0 38.0 36.0 38.0 80-81 37.03993637809197 38.0 38.0 38.0 36.0 38.0 82-83 37.03685891997077 38.0 38.0 38.0 36.0 38.0 84-85 37.02558276547614 38.0 38.0 38.0 36.0 38.0 86-87 36.99114882659096 38.0 38.0 38.0 36.0 38.0 88-89 36.946579084039236 38.0 38.0 38.0 36.0 38.0 90-91 36.94832064935929 38.0 38.0 38.0 36.0 38.0 92-93 36.921918028547076 38.0 38.0 38.0 35.0 38.0 94-95 36.90660416144021 38.0 38.0 38.0 35.0 38.0 96-97 36.8958611225915 38.0 38.0 38.0 35.0 38.0 98-99 36.94069600147063 38.0 38.0 38.0 35.0 38.0 100 35.217998624312855 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 13.0 20 91.0 21 255.0 22 600.0 23 1258.0 24 2596.0 25 4968.0 26 8248.0 27 13079.0 28 20009.0 29 29435.0 30 40902.0 31 54885.0 32 71998.0 33 96388.0 34 142023.0 35 252913.0 36 736856.0 37 4315574.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.34625036364217 19.14542147530384 13.973320534279912 23.535007626774078 2 14.334519720412045 20.3748729950044 42.96295209246395 22.327655192119604 3 18.170765500220558 26.04042233423312 30.106256889778223 25.68255527576809 4 12.34879607465002 17.971183138398107 38.842266917238064 30.837753869713808 5 13.50503400810849 37.45220536881441 35.56333219204632 13.479428431030783 6 30.251867546302787 37.6054454936144 18.823647828798297 13.319039131284516 7 26.704189071484496 32.567059069300484 23.086085431955105 17.64266642725991 8 24.148468584936637 37.16094731887984 21.109981985789595 17.580602110393926 9 25.536666784643554 17.121784086759625 21.390170568680244 35.95137855991658 10-11 24.221412843092672 26.74995433430466 28.961089029287162 20.067543793315508 12-13 24.997336887602845 24.28957052672651 29.127267422236685 21.585825163433956 14-15 22.088510288591607 25.65771970245654 26.7906603741824 25.46310963476946 16-17 21.724479657187942 28.79645447804292 27.46295597706875 22.01610988770039 18-19 21.761158958891386 28.003891510757335 29.135839450147138 21.099110080204138 20-21 22.469702311419184 27.119845456494847 29.128546729589956 21.281905502496016 22-23 22.251955594123185 26.999880521685142 28.971531701637094 21.77663218255458 24-25 22.028137812430124 27.113249687688583 29.006413715284225 21.852198784597068 26-27 21.99609846362975 27.25603223732061 28.95103514870873 21.796834150340906 28-29 21.894039931853744 27.309432051782313 28.98419898872284 21.812329027641102 30-31 22.18731976315582 27.125351137679164 28.927261423471695 21.76006767569332 32-33 21.990667309942115 27.27625588749019 28.85912224424497 21.87395455832273 34-35 22.1203550620685 27.280713374133054 28.87831559926924 21.72061596452921 36-37 22.06738030579706 27.238618677771566 28.878158729506076 21.815842286925303 38-39 21.93435975682909 27.38291081765877 28.930628756636263 21.75210066887588 40-41 22.21509777163431 27.21690246934436 28.794423175806443 21.773576583214886 42-43 22.06255660621494 27.291896661138086 28.68960449647922 21.955942236167754 44-45 22.15026618471196 27.36627166218357 28.57574320676849 21.907718946335976 46-47 22.144355027421877 27.384047315558025 28.421266398310717 22.05033125870938 48-49 22.109032623029893 27.48738779842656 28.368520539198116 22.03505903934543 50-51 22.137487074550897 27.605300025127555 28.277592234243226 21.97962066607832 52-53 22.270493065016762 27.47487576305493 28.191096294832708 22.0635348770956 54-55 22.218379392241328 27.43361472656337 28.223482830830882 22.12452305036442 56-57 22.19024023450421 27.504227840293392 28.199988259881497 22.1055436653209 58-59 22.21347321974462 27.526633531227883 28.224216281349147 22.03567696767835 60-61 22.255877881543785 27.46939702564905 28.27322912923171 22.001495963575454 62-63 22.237215906382982 27.492163822156034 28.22964719375043 22.04097307771056 64-65 22.19475445474443 27.532196554545536 28.21459810235466 22.05845088835537 66-67 22.2396127355116 27.538157036238154 28.096577490813324 22.125652737436923 68-69 22.180078796451745 27.50787979169823 28.159401590053907 22.152639821796118 70-71 22.236949395883148 27.371215924661165 28.135670214228313 22.256164465227375 72-73 22.275734790967206 27.395545222764206 28.066323030236834 22.262396956031758 74-75 22.159773046586633 27.494723429336542 28.079202019581555 22.266301504495267 76-77 22.30860515712589 27.4228225371339 27.97165936383233 22.29691294190788 78-79 22.239569786743907 27.486443936988813 27.926473696450838 22.347512579816442 80-81 22.24836825921412 27.545873176172442 27.90619117463215 22.29956738998129 82-83 22.300515498704765 27.511143181971565 27.93519148207175 22.25314983725192 84-85 22.377126485759042 27.512922421894608 27.88849700198136 22.221454090364986 86-87 22.25433064816714 27.54512995141254 27.91956738906926 22.28097201135106 88-89 22.30708723144306 27.565739688485415 27.86553261293297 22.261640467138555 90-91 22.386376267380573 27.564843528528826 27.80440398323917 22.244376220851432 92-93 22.412335835692758 27.538724349293 27.84829940941533 22.200640405598914 94-95 22.319495179944347 27.65304171227367 27.824458100902472 22.203005006879515 96-97 22.399928798402783 27.70573040135328 27.875124176187814 22.019216624056124 98-99 23.43826294900527 29.63572029127738 28.10409188662873 18.821924873088626 100 22.32718375082676 30.566893931267497 22.066001463129194 25.039920854776547 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 781.0 1 776.0 2 1293.5 3 1976.5 4 2397.0 5 3115.5 6 3886.5 7 5159.5 8 6965.0 9 8048.5 10 8050.5 11 7934.5 12 8496.5 13 9999.5 14 12763.5 15 15618.0 16 17760.0 17 19155.0 18 19145.0 19 18199.0 20 17181.0 21 16611.5 22 17845.5 23 21140.0 24 26670.5 25 34918.0 26 45066.5 27 56185.5 28 68018.0 29 81024.0 30 94009.5 31 107243.0 32 121107.0 33 134300.5 34 146915.0 35 158234.5 36 170473.0 37 183860.0 38 195098.5 39 204105.0 40 213296.5 41 221195.0 42 226903.0 43 232227.0 44 235920.5 45 241109.5 46 245334.5 47 245851.0 48 245253.5 49 241486.5 50 235667.5 51 227260.0 52 216781.5 53 205889.5 54 193403.0 55 179443.5 56 164505.0 57 148586.0 58 132259.0 59 115273.0 60 96214.5 61 77715.0 62 61739.0 63 47866.5 64 35976.0 65 26488.0 66 19524.5 67 14865.0 68 11345.0 69 8165.5 70 5854.5 71 4190.0 72 2829.0 73 1852.0 74 1169.5 75 716.0 76 444.0 77 274.0 78 168.5 79 106.5 80 70.5 81 45.5 82 29.0 83 18.0 84 10.5 85 6.5 86 5.5 87 7.0 88 7.0 89 5.0 90 2.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.006698785154594321 6 5.179473057676023E-5 7 0.0 8 1.7264910192253408E-5 9 0.0 10-11 1.7264910192253408E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.179982819723648E-4 26-27 8.634009102835797E-6 28-29 6.391045626883847E-4 30-31 0.0023339478243370594 32-33 1.3856210123884045E-4 34-35 2.6041628237180553E-5 36-37 2.3520382807297067E-4 38-39 4.466041403356309E-4 40-41 5.460744119747425E-4 42-43 1.5061006822990466E-4 44-45 0.0 46-47 0.0014383389055481496 48-49 9.965812732412946E-5 50-51 0.0018710689298142879 52-53 0.0016357884036019325 54-55 0.00251658936635518 56-57 0.002403871238966417 58-59 0.0036797025448616284 60-61 0.0026770352751897667 62-63 0.002697455917803657 64-65 0.0039861680927703305 66-67 0.0016754269869256651 68-69 1.3675511564256783E-4 70-71 6.306444526099763E-4 72-73 0.006102034969033166 74-75 0.005490959405878192 76-77 0.0043048135394267864 78-79 0.0025081006041973576 80-81 1.0289213323790431E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.002165100541723087 90-91 2.584945621360612E-4 92-93 1.0877930582485988E-5 94-95 5.4948164648878485E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 149.0 22-23 316.0 24-25 363.0 26-27 1208.0 28-29 3412.0 30-31 10146.0 32-33 12578.0 34-35 17679.0 36-37 28252.0 38-39 33024.0 40-41 32682.0 42-43 36418.0 44-45 42703.0 46-47 43687.0 48-49 41490.0 50-51 38180.0 52-53 36343.0 54-55 37989.0 56-57 38685.0 58-59 40820.0 60-61 40321.0 62-63 39869.0 64-65 42032.0 66-67 43971.0 68-69 44470.0 70-71 43826.0 72-73 41195.0 74-75 41524.0 76-77 43425.0 78-79 44595.0 80-81 44284.0 82-83 42459.0 84-85 42025.0 86-87 42876.0 88-89 45087.0 90-91 46108.0 92-93 45816.0 94-95 54123.0 96-97 177840.0 98-99 396053.0 100-101 3934034.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.38783767009086 #Duplication Level Percentage of deduplicated Percentage of total 1 90.17943010978294 77.90405969505233 2 7.091515606895666 12.252413981668374 3 1.5803678946539266 4.0957369542716 4 0.5672218288291493 1.9600426908729847 5 0.2526745691111645 1.0914004829867716 6 0.11653587967914641 0.6040369593878004 7 0.06325278551358174 0.3824989956989861 8 0.03893865877498549 0.26910612266756045 9 0.024592970992784582 0.1912080227354935 >10 0.08360854502870382 1.0607072878635482 >50 0.0012832179730823915 0.07285921317528071 >100 5.184857900702669E-4 0.08331919654044809 >500 5.944697475478087E-5 0.032610397078833245 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7264910192253408E-5 0.0 0.0 0.0 3 0.0 1.7264910192253408E-5 0.0 0.0 0.0 4 0.0 3.4529820384506816E-5 0.0 0.0 0.0 5 0.0 3.4529820384506816E-5 0.0 0.0 0.0 6 5.179473057676022E-5 5.179473057676022E-5 0.0 1.7264910192253408E-5 0.0 7 5.179473057676022E-5 5.179473057676022E-5 0.0 1.7264910192253408E-5 0.0 8 5.179473057676022E-5 5.179473057676022E-5 0.0 1.7264910192253408E-5 0.0 9 5.179473057676022E-5 1.0358946115352044E-4 0.0 1.7264910192253408E-5 1.7264910192253408E-5 10-11 5.179473057676022E-5 1.0358946115352044E-4 0.0 3.4529820384506816E-5 1.7264910192253408E-5 12-13 5.179473057676022E-5 1.2085437134577385E-4 0.0 6.905964076901363E-5 1.7264910192253408E-5 14-15 5.179473057676022E-5 1.7264910192253409E-4 0.0 8.632455096126704E-5 5.179473057676022E-5 16-17 6.905964076901363E-5 1.7264910192253409E-4 0.0 1.3811928153802726E-4 6.905964076901363E-5 18-19 6.905964076901363E-5 1.9854646721091418E-4 0.0 1.7264910192253409E-4 7.769209586514034E-5 20-21 6.905964076901363E-5 2.417087426915477E-4 0.0 1.8991401211478748E-4 8.632455096126704E-5 22-23 6.905964076901363E-5 2.6760610797992783E-4 0.0 2.4170874269154773E-4 9.495700605739374E-5 24-25 6.905964076901363E-5 3.107683834605614E-4 0.0 2.848710181721812E-4 1.0358946115352044E-4 26-27 6.905964076901363E-5 3.4529820384506817E-4 0.0 3.280332936528147E-4 1.0358946115352044E-4 28-29 6.905964076901363E-5 3.7982802422957497E-4 0.0 5.870069465366158E-4 1.0358946115352044E-4 30-31 6.905964076901363E-5 5.179473057676023E-4 0.0 0.0015365770071105534 1.0358946115352044E-4 32-33 6.905964076901363E-5 5.265797608637289E-4 0.0 0.003349392577297161 1.0358946115352044E-4 34-35 6.905964076901363E-5 6.38801677113376E-4 0.0 0.0054816089860404565 1.0358946115352044E-4 36-37 6.905964076901363E-5 7.423911382668965E-4 0.0 0.009642452342373528 1.0358946115352044E-4 38-39 6.905964076901363E-5 7.510235933630232E-4 0.0 0.019259007319458676 1.0358946115352044E-4 40-41 6.905964076901363E-5 8.287156892281635E-4 0.0 0.029626585889906847 1.0358946115352044E-4 42-43 6.905964076901363E-5 8.373481443242903E-4 0.0 0.03621314912825152 1.1222191624964714E-4 44-45 6.905964076901363E-5 8.805104198049238E-4 0.0 0.044146375361591966 1.2085437134577385E-4 46-47 6.905964076901363E-5 9.236726952855574E-4 0.0 0.05283062518829543 1.2085437134577385E-4 48-49 6.905964076901363E-5 9.32305150381684E-4 0.0 0.060945132978654525 1.2085437134577385E-4 50-51 6.905964076901363E-5 9.668349707661908E-4 0.0 0.06913733286487878 1.2085437134577385E-4 52-53 6.905964076901363E-5 9.840998809584442E-4 0.0 0.09097744425807933 1.3811928153802726E-4 54-55 6.905964076901363E-5 9.92732336054571E-4 0.0 0.11879121457779956 1.5538419173028066E-4 56-57 6.905964076901363E-5 0.0010013647911506977 0.0 0.1644396371261176 1.5538419173028066E-4 58-59 6.905964076901363E-5 0.0010013647911506977 0.0 0.1971911717608223 1.5538419173028066E-4 60-61 6.905964076901363E-5 0.0010099972462468245 0.0 0.20845652566126766 1.5538419173028066E-4 62-63 6.905964076901363E-5 0.0010704244319197113 0.0 0.2178745341711419 1.5538419173028066E-4 64-65 6.905964076901363E-5 0.0011740138930732317 0.0 0.22214759944372459 1.5538419173028066E-4 66-67 6.905964076901363E-5 0.0011740138930732317 0.0 0.22729254268101612 1.640166468264074E-4 68-69 6.905964076901363E-5 0.0011999112583616117 0.0 0.23203176052878965 1.8128155701866078E-4 70-71 7.769209586514034E-5 0.0012085437134577385 0.0 0.23608901442396923 1.8991401211478748E-4 72-73 1.5538419173028066E-4 0.0012085437134577385 0.0 0.23945567191145864 1.8991401211478748E-4 74-75 1.5538419173028066E-4 0.0012344410787461188 0.0 0.24220942508712306 1.8991401211478748E-4 76-77 1.640166468264074E-4 0.0012862358093228788 0.0 0.24485958880163394 1.8991401211478748E-4 78-79 1.7264910192253409E-4 0.0012948682644190056 0.0 0.24670693419220507 1.8991401211478748E-4 80-81 1.7264910192253409E-4 0.0013035007195151323 0.0 0.24736300077951068 1.8991401211478748E-4 82-83 1.7264910192253409E-4 0.0013207656297073856 0.0 0.2478464182648938 1.8991401211478748E-4 84-85 1.7264910192253409E-4 0.0013466629949957657 0.0 0.24806222964229696 1.8991401211478748E-4 86-87 1.7264910192253409E-4 0.0013639279051880192 0.0 0.24816581910345048 1.8991401211478748E-4 88 1.7264910192253409E-4 0.0013811928153802727 0.0 0.24818308401364272 1.8991401211478748E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6920 0.0 47.806927 1 GTATCAA 12700 0.0 39.548553 1 TCAACGC 14705 0.0 33.218784 4 ATCAACG 14755 0.0 33.077023 3 CAACGCA 15065 0.0 32.424976 5 TATCAAC 15810 0.0 31.278488 2 AACGCAG 15720 0.0 31.23592 6 ACGCAGA 17980 0.0 27.333672 7 CGCAGAG 18160 0.0 27.015305 8 GCAGAGT 21775 0.0 22.550112 9 GTACATG 15525 0.0 21.225874 1 TACATGG 15470 0.0 20.74444 2 GAGTACT 12745 0.0 20.649206 12-13 ACATGGG 15655 0.0 19.948978 3 CAGAGTA 21040 0.0 19.212795 10-11 AGAGTAC 19295 0.0 19.131016 10-11 GTGGTAT 3695 0.0 19.119 1 CATGGGG 12370 0.0 18.595474 4 GTACTTT 14290 0.0 18.37153 14-15 TGGTATC 3595 0.0 17.613844 2 >>END_MODULE