##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138854_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3626771 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.779835285988554 32.0 30.0 33.0 18.0 34.0 2 31.603859741902646 33.0 32.0 33.0 27.0 34.0 3 32.283770604761095 33.0 33.0 33.0 30.0 34.0 4 32.342103209714644 33.0 33.0 33.0 31.0 34.0 5 32.99085825931662 33.0 33.0 34.0 32.0 34.0 6 36.935582919351674 38.0 37.0 38.0 35.0 38.0 7 37.312934839282654 38.0 38.0 38.0 36.0 38.0 8 37.28140238244984 38.0 38.0 38.0 36.0 38.0 9 37.42049167151717 38.0 38.0 38.0 37.0 38.0 10-11 37.48421033475783 38.0 38.0 38.0 37.0 38.0 12-13 37.498380101748914 38.0 38.0 38.0 37.0 38.0 14-15 37.494929235951204 38.0 38.0 38.0 37.0 38.0 16-17 37.49373478501951 38.0 38.0 38.0 37.0 38.0 18-19 37.4953156678489 38.0 38.0 38.0 37.0 38.0 20-21 37.49694729981249 38.0 38.0 38.0 37.0 38.0 22-23 37.50506003923138 38.0 38.0 38.0 37.0 38.0 24-25 37.467377505894916 38.0 38.0 38.0 37.0 38.0 26-27 37.47546640309108 38.0 38.0 38.0 37.0 38.0 28-29 37.47187457168947 38.0 38.0 38.0 37.0 38.0 30-31 37.46460115604806 38.0 38.0 38.0 37.0 38.0 32-33 37.46043294582447 38.0 38.0 38.0 37.0 38.0 34-35 37.444109552881955 38.0 38.0 38.0 37.0 38.0 36-37 37.420213969962795 38.0 38.0 38.0 37.0 38.0 38-39 37.39266540861255 38.0 38.0 38.0 37.0 38.0 40-41 37.38698322119476 38.0 38.0 38.0 37.0 38.0 42-43 37.37076729388651 38.0 38.0 38.0 37.0 38.0 44-45 37.339601708327244 38.0 38.0 38.0 37.0 38.0 46-47 37.304701904180924 38.0 38.0 38.0 37.0 38.0 48-49 37.2625316492201 38.0 38.0 38.0 37.0 38.0 50-51 37.241527465100674 38.0 38.0 38.0 37.0 38.0 52-53 37.23110477708899 38.0 38.0 38.0 37.0 38.0 54-55 37.20960509695779 38.0 38.0 38.0 37.0 38.0 56-57 37.173776290291386 38.0 38.0 38.0 37.0 38.0 58-59 37.177479973705815 38.0 38.0 38.0 37.0 38.0 60-61 37.18714330416904 38.0 38.0 38.0 37.0 38.0 62-63 37.191178989078466 38.0 38.0 38.0 37.0 38.0 64-65 37.1934761236903 38.0 38.0 38.0 37.0 38.0 66-67 37.19703538087663 38.0 38.0 38.0 36.5 38.0 68-69 37.194280525475996 38.0 38.0 38.0 36.0 38.0 70-71 37.16024004392642 38.0 38.0 38.0 36.0 38.0 72-73 37.13363968719342 38.0 38.0 38.0 36.0 38.0 74-75 37.11525210109728 38.0 38.0 38.0 36.0 38.0 76-77 37.11501244709679 38.0 38.0 38.0 36.0 38.0 78-79 37.11636856102578 38.0 38.0 38.0 36.0 38.0 80-81 37.10359808630821 38.0 38.0 38.0 36.0 38.0 82-83 37.081888854009264 38.0 38.0 38.0 36.0 38.0 84-85 37.09862860373653 38.0 38.0 38.0 36.0 38.0 86-87 37.06955219240862 38.0 38.0 38.0 36.0 38.0 88-89 37.028583038628405 38.0 38.0 38.0 36.0 38.0 90-91 37.03328151859105 38.0 38.0 38.0 36.0 38.0 92-93 37.0118675492635 38.0 38.0 38.0 36.0 38.0 94-95 36.973300248788945 38.0 38.0 38.0 36.0 38.0 96-97 36.91814320676396 38.0 38.0 38.0 35.0 38.0 98-99 36.97473201932462 38.0 38.0 38.0 35.0 38.0 100 35.258103354755995 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 15.0 20 44.0 21 126.0 22 313.0 23 700.0 24 1387.0 25 2631.0 26 4636.0 27 7354.0 28 11437.0 29 17368.0 30 23898.0 31 32179.0 32 41783.0 33 55892.0 34 82407.0 35 146960.0 36 433972.0 37 2763662.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.763466455422744 19.59613661849618 14.041112604021594 23.599284322059486 2 14.138637371921195 20.47223273815744 43.34230090623312 22.046828983688243 3 18.108835655738947 26.384296113540117 30.305607936095218 25.201260294625715 4 12.190072105462407 18.317781850577276 38.962647490012465 30.52949855394785 5 13.258119309314113 37.62255483187832 35.764861272728275 13.354464586079292 6 29.58469933301533 37.947622815894036 19.05177334101694 13.4159045100737 7 26.278699779693778 32.7624856277073 23.11094996374184 17.84786462885708 8 23.833459570510517 37.288017357588885 21.40954033215772 17.468982739742874 9 25.314839374981048 17.247137259875867 21.53613270210132 35.90189066304177 10-11 24.042091993413976 26.9292335977697 29.02642998778114 20.002244421035186 12-13 24.87496453456808 24.36692308392231 29.18295640943418 21.575155972075436 14-15 21.958954673454706 25.80857738191907 26.858560962354666 25.37390698227156 16-17 21.560018539907812 29.009027589555558 27.51486101548733 21.9160928550493 18-19 21.55801951653413 28.04258939977186 29.34818603104525 21.05120505264876 20-21 22.33990560360545 27.169342058370805 29.20143572959369 21.28931660843005 22-23 22.058605168909775 27.242652984158415 29.061630433029272 21.637111413902538 24-25 21.873252408711622 27.300395431306907 29.198189950419422 21.628162209562046 26-27 21.839894631670013 27.44402652188817 29.14513433993255 21.570944506509267 28-29 21.70856845561899 27.429667448629875 29.174133201510372 21.687630894240765 30-31 21.91416738837896 27.164325778513916 29.224467503342105 21.697039329765015 32-33 21.631011932934506 27.474111366399928 29.103155944420976 21.791720756244587 34-35 21.864682164898912 27.393210580112736 29.190962422687335 21.551144832301016 36-37 21.740690462851973 27.41278537718832 29.223114378750857 21.62340978120885 38-39 21.607748856116977 27.3928784887313 29.194270399620347 21.80510225553138 40-41 21.94697910965896 27.189489527831384 29.264237137796606 21.59929422471305 42-43 21.872818190528854 27.212550295285997 29.105120739115847 21.809510775069306 44-45 21.76608969064167 27.418986816105434 29.012055003627967 21.802868489624927 46-47 21.93290398837356 27.29512675343912 28.846877034763363 21.92509222342396 48-49 21.851112800984513 27.48413808716651 28.71930654561497 21.945442566234007 50-51 21.659176131898967 27.661276232601956 28.574114737023553 22.105432898475524 52-53 21.74642276310651 27.456622637706275 28.68041922525891 22.11653537392831 54-55 21.927134319470685 27.22910046726914 28.79722974056198 22.0465354726982 56-57 21.948982564481362 27.006962131592527 28.70769022385447 22.336365080071637 58-59 21.51936936996534 26.964981969041524 28.993775346502964 22.521873314490172 60-61 21.81702259629868 27.420154792843093 29.022104470076876 21.74071814078135 62-63 21.274431264498432 27.759449132999812 28.951329129723185 22.014790472778568 64-65 21.092973097269272 28.13436797965862 28.586905355263887 22.18575356780822 66-67 21.166003647844185 28.687137657656237 28.137332856514785 22.009525837984796 68-69 21.30051210135315 28.58295191539905 27.964675720820797 22.151860262427 70-71 21.3082784979512 27.900115194645437 28.061440454423014 22.730165852980353 72-73 21.620439443706452 27.225922308497967 28.093716004296187 23.059922243499397 74-75 21.7527822204082 27.30591004172499 28.254664709127685 22.686643028739127 76-77 22.03933927368851 27.2603897976263 27.56036083523631 23.139910093448886 78-79 22.255830990291063 27.34528533822561 27.074292780146607 23.324590891336715 80-81 22.0579675589248 27.65993152600653 27.32607473558187 22.9560261794868 82-83 22.06150102104168 27.48266650589605 27.32161585672702 23.13421661633525 84-85 22.20752812615739 27.82173348830874 27.208594981836843 22.762143403697024 86-87 22.636625937744228 27.722585895305812 27.30901621533029 22.331771951619668 88-89 22.393851145641584 27.90678265684084 27.592341038795553 22.107025158722028 90-91 22.37803821326756 27.47513470362802 27.425526673915314 22.72130040918911 92-93 22.371427626121257 27.102967896249996 27.61877656496059 22.906827912668152 94-95 21.64506698114959 27.593004272769335 28.23400723698336 22.527921509097716 96-97 21.775088474329106 27.448684889118102 28.44859597019438 22.327630666358413 98-99 22.900157651308714 29.34528111389911 28.803400658987883 18.951160575804295 100 21.97698022649945 30.327133910813785 22.449785499432927 25.24610036325383 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 464.0 1 479.0 2 773.5 3 1204.0 4 1609.5 5 2197.0 6 2697.5 7 3373.5 8 4303.5 9 4894.5 10 5010.0 11 5038.0 12 5502.0 13 6570.0 14 8595.5 15 10855.0 16 12304.5 17 13061.0 18 12889.0 19 11887.0 20 10841.0 21 10260.5 22 10680.0 23 12445.0 24 15668.5 25 20517.5 26 27135.0 27 34763.5 28 42444.0 29 51031.0 30 59699.0 31 68369.5 32 77263.0 33 85632.0 34 94125.0 35 101709.5 36 110101.0 37 118765.0 38 124368.0 39 128766.0 40 134768.5 41 140101.0 42 143658.5 43 146849.0 44 153233.0 45 161450.5 46 160287.5 47 155769.0 48 153027.0 49 147985.5 50 143398.0 51 138393.5 52 131615.5 53 124039.5 54 116323.0 55 107459.0 56 98034.5 57 87758.5 58 77246.5 59 67412.5 60 56195.0 61 44553.5 62 34290.5 63 25963.5 64 19590.5 65 14296.0 66 10421.0 67 8002.0 68 6049.0 69 4321.0 70 3103.0 71 2249.0 72 1568.0 73 1035.0 74 653.5 75 407.5 76 258.0 77 150.0 78 91.5 79 67.0 80 41.0 81 26.0 82 19.5 83 12.5 84 9.5 85 7.0 86 4.5 87 2.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.006369302059600675 6 2.7572736188747512E-5 7 2.7572736188747512E-5 8 0.0 9 2.7572736188747512E-5 10-11 1.3786368094373756E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.066552284580864E-4 26-27 0.0 28-29 6.482602144086177E-4 30-31 0.0026506951240877364 32-33 2.4903164735679884E-4 34-35 4.161814107023824E-5 36-37 4.1786291533484467E-4 38-39 6.435699665483524E-4 40-41 6.74947902458779E-4 42-43 1.4153213918893307E-4 44-45 0.0 46-47 0.0013810664422433698 48-49 2.9024534729452153E-5 50-51 0.001946125680796466 52-53 0.0013643031117700189 54-55 0.002525080508962274 56-57 0.0024973788539881013 58-59 0.003336913287588711 60-61 0.0024117367241661197 62-63 0.003013927178446422 64-65 0.004078102740199123 66-67 0.00150396111455368 68-69 1.0744876267377342E-4 70-71 6.051406230434756E-4 72-73 0.006138376912669578 74-75 0.005466064375028419 76-77 0.004669587504311772 78-79 0.0022120693084909876 80-81 1.630876537427312E-5 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0020355087720250534 90-91 2.2284137842134368E-4 92-93 0.0 94-95 2.101529808624188E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 26.0 20-21 86.0 22-23 174.0 24-25 236.0 26-27 748.0 28-29 2112.0 30-31 7341.0 32-33 9055.0 34-35 12685.0 36-37 20014.0 38-39 12719.0 40-41 22931.0 42-43 25293.0 44-45 29970.0 46-47 30699.0 48-49 28919.0 50-51 14822.0 52-53 2518.0 54-55 2291.0 56-57 2235.0 58-59 15376.0 60-61 28422.0 62-63 28386.0 64-65 30105.0 66-67 33175.0 68-69 34884.0 70-71 38916.0 72-73 29781.0 74-75 28849.0 76-77 29718.0 78-79 30623.0 80-81 30821.0 82-83 29234.0 84-85 28743.0 86-87 29656.0 88-89 30619.0 90-91 30543.0 92-93 30757.0 94-95 35818.0 96-97 120930.0 98-99 272981.0 100-101 2433560.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.59648175715458 #Duplication Level Percentage of deduplicated Percentage of total 1 90.18142885524783 78.09394458697601 2 7.177965451636924 12.431731085723253 3 1.5779406668524096 4.09932330512871 4 0.5283118920887618 1.8299980450140914 5 0.223193830281955 0.9663900226160383 6 0.10712336193237991 0.5565903754405442 7 0.06204761586214064 0.37611736645565574 8 0.0388102439509353 0.26886644658303094 9 0.02507576912441007 0.1954326045175737 >10 0.0763885183654616 0.9621579743129735 >50 9.835022600018577E-4 0.056308064999903415 >100 6.393458135375242E-4 0.11029448300660012 >500 9.094658318867779E-5 0.05284563922554365 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.7572736188747512E-5 0.0 0.0 2.7572736188747512E-5 5 2.7572736188747512E-5 2.7572736188747512E-5 0.0 0.0 2.7572736188747512E-5 6 1.3786368094373754E-4 2.7572736188747512E-5 0.0 0.0 2.7572736188747512E-5 7 1.3786368094373754E-4 5.5145472377495025E-5 0.0 0.0 2.7572736188747512E-5 8 1.3786368094373754E-4 5.5145472377495025E-5 0.0 0.0 2.7572736188747512E-5 9 1.3786368094373754E-4 1.6543641713248505E-4 0.0 0.0 5.5145472377495025E-5 10-11 1.6543641713248505E-4 1.6543641713248505E-4 0.0 0.0 5.5145472377495025E-5 12-13 1.6543641713248505E-4 1.6543641713248505E-4 0.0 0.0 5.5145472377495025E-5 14-15 1.7922278522685884E-4 2.481546256987276E-4 0.0 0.0 5.5145472377495025E-5 16-17 2.757273618874751E-4 2.757273618874751E-4 0.0 0.0 5.5145472377495025E-5 18-19 3.033000980762226E-4 2.757273618874751E-4 0.0 0.0 5.5145472377495025E-5 20-21 3.033000980762226E-4 3.033000980762226E-4 0.0 0.0 5.5145472377495025E-5 22-23 3.033000980762226E-4 3.998046747368389E-4 0.0 0.0 6.893184047186877E-5 24-25 3.033000980762226E-4 4.411637790199602E-4 0.0 0.0 8.271820856624253E-5 26-27 3.033000980762226E-4 4.549501471143339E-4 0.0 5.5145472377495025E-5 1.240773128493638E-4 28-29 3.033000980762226E-4 4.8252288330308143E-4 0.0 2.481546256987276E-4 1.3786368094373754E-4 30-31 3.308728342649701E-4 5.790274599636977E-4 0.0 9.650457666061629E-4 1.3786368094373754E-4 32-33 3.308728342649701E-4 5.790274599636977E-4 0.0 0.0029502827721959836 1.3786368094373754E-4 34-35 3.722319385480914E-4 6.341729323411927E-4 0.0 0.005693770022976361 1.6543641713248505E-4 36-37 4.135910428312127E-4 6.617456685299402E-4 0.0 0.011842490193067056 1.6543641713248505E-4 38-39 4.135910428312127E-4 7.031047728130616E-4 0.0 0.17704453906794776 1.6543641713248505E-4 40-41 4.411637790199602E-4 8.133957175680516E-4 0.0 0.3459826936964038 1.6543641713248505E-4 42-43 4.411637790199602E-4 8.409684537567992E-4 0.0 0.3615475032749517 1.6543641713248505E-4 44-45 4.411637790199602E-4 9.512593985117892E-4 0.0 0.3823097736250786 1.6543641713248505E-4 46-47 4.549501471143339E-4 0.0010477639751724054 0.0 0.4041749534227554 1.7922278522685884E-4 48-49 4.687365152087077E-4 0.0010477639751724054 0.0 0.42575061949045034 1.930091533212326E-4 50-51 4.8252288330308143E-4 0.0010891230794555268 0.0 0.44717463550910713 1.930091533212326E-4 52-53 5.514547237749502E-4 0.0011029094475499004 0.0 0.961764610999702 2.2058188950998007E-4 54-55 5.514547237749502E-4 0.0011166958156442741 0.0 1.640881103328553 2.481546256987276E-4 56-57 5.514547237749502E-4 0.0011580549199273955 0.0 2.371007157606587 2.481546256987276E-4 58-59 5.514547237749502E-4 0.0011718412880217693 0.0 3.1220471322837864 2.481546256987276E-4 60-61 5.514547237749502E-4 0.001240773128493638 0.0 3.318626954941462 2.481546256987276E-4 62-63 6.066001961524452E-4 0.0012545594965880117 0.0 3.3251479070501 2.757273618874751E-4 64-65 6.066001961524452E-4 0.001461355018003618 0.0 3.330951968017832 2.757273618874751E-4 66-67 6.341729323411928E-4 0.001461355018003618 0.0 3.3364940879917704 2.757273618874751E-4 68-69 6.341729323411928E-4 0.0015027141222867394 0.0 3.3414296077695558 2.757273618874751E-4 70-71 6.341729323411928E-4 0.0015165004903811132 0.0 3.3459515365045105 2.757273618874751E-4 72-73 7.031047728130616E-4 0.0015165004903811132 0.0 3.3498255059390294 2.757273618874751E-4 74-75 7.168911409074353E-4 0.0015165004903811132 0.0 3.352651711398376 2.757273618874751E-4 76-77 7.168911409074353E-4 0.0015992186989473556 0.0 3.3559052942686485 2.757273618874751E-4 78-79 7.168911409074353E-4 0.0016267914351361032 0.0 3.357807813065672 2.757273618874751E-4 80-81 7.168911409074353E-4 0.0016267914351361032 0.0 3.3585660633108625 2.757273618874751E-4 82-83 7.168911409074353E-4 0.0016681505394192243 0.0 3.3590210134579768 3.033000980762226E-4 84-85 7.168911409074353E-4 0.0016957232756079719 0.0 3.3592002362432036 3.033000980762226E-4 86-87 7.168911409074353E-4 0.0017370823798910932 0.0 3.3592967408198646 3.033000980762226E-4 88 7.168911409074353E-4 0.0017370823798910932 0.0 3.359324313556053 3.308728342649701E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4595 0.0 48.182243 1 GTATCAA 8280 0.0 39.401817 1 ATCAACG 9775 0.0 32.79945 3 TCAACGC 9875 0.0 32.59893 4 CAACGCA 10055 0.0 31.929178 5 TATCAAC 10290 0.0 31.410517 2 ATCTCGT 5255 0.0 31.101927 94 AACGCAG 10400 0.0 30.951603 6 ACGCAGA 11850 0.0 27.091156 7 CGCAGAG 11940 0.0 26.923235 8 GTGGTAT 2080 0.0 25.82914 1 TATCTCG 6315 0.0 25.168068 94 TGGTATC 2100 0.0 23.726307 2 GCAGAGT 14170 0.0 22.441603 9 TACATGG 10745 0.0 22.338549 2 GTACATG 11295 0.0 21.634382 1 ACATGGG 11025 0.0 21.10315 3 ACCGAAC 530 0.0 20.435808 8 GAGTACT 8150 0.0 19.828 12-13 CATGGGG 8170 0.0 19.356304 4 >>END_MODULE