##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138852_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7045597 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85461672020128 33.0 31.0 34.0 30.0 34.0 2 32.12379845171389 34.0 31.0 34.0 30.0 34.0 3 32.291437475064214 34.0 31.0 34.0 30.0 34.0 4 35.715177578280446 37.0 35.0 37.0 35.0 37.0 5 35.776690605494466 37.0 35.0 37.0 35.0 37.0 6 35.80272757581792 37.0 36.0 37.0 35.0 37.0 7 35.72962376360726 37.0 36.0 37.0 35.0 37.0 8 35.67815019791794 37.0 35.0 37.0 35.0 37.0 9 37.42065264306204 39.0 38.0 39.0 35.0 39.0 10-11 37.414034822031404 39.0 38.0 39.0 35.0 39.0 12-13 37.33870621609496 39.0 38.0 39.0 34.5 39.0 14-15 38.75012323299218 41.0 39.0 41.0 35.0 41.0 16-17 38.75683700046994 41.0 39.0 41.0 34.0 41.0 18-19 38.77604034122304 41.0 38.5 41.0 34.0 41.0 20-21 38.80815755638329 40.5 39.0 41.0 34.0 41.0 22-23 38.77653110924052 40.0 39.0 41.0 34.0 41.0 24-25 38.73741629780966 40.0 38.0 41.0 34.0 41.0 26-27 38.68350504715422 40.0 38.0 41.0 34.0 41.0 28-29 38.60620515583643 40.0 38.0 41.0 34.0 41.0 30-31 38.48583615836131 40.0 38.0 41.0 34.0 41.0 32-33 38.415327682358466 40.0 38.0 41.0 33.5 41.0 34-35 38.25629681829207 40.0 38.0 41.0 33.0 41.0 36-37 38.14972116917234 40.0 38.0 41.0 33.0 41.0 38-39 38.139363704826394 40.0 38.0 41.0 33.0 41.0 40-41 38.05131414162112 40.0 38.0 41.0 33.0 41.0 42-43 37.884304989741466 40.0 37.5 41.0 32.5 41.0 44-45 37.951928393670556 40.0 37.5 41.0 32.5 41.0 46-47 38.15474081524416 40.0 38.0 41.0 33.0 41.0 48-49 38.148308222847305 40.0 38.0 41.0 33.0 41.0 50-51 38.05667063306335 40.0 37.5 41.0 33.0 41.0 52-53 37.9833845745731 40.0 37.0 41.0 33.0 41.0 54-55 37.905808363970344 40.0 37.0 41.0 33.0 41.0 56-57 37.95907166242128 40.0 37.0 41.0 33.0 41.0 58-59 37.77027857562692 40.0 36.5 41.0 32.0 41.0 60-61 37.69343299832023 39.5 36.0 41.0 32.0 41.0 62-63 37.46692234559873 39.0 36.0 41.0 32.0 41.0 64-65 37.26489920138376 39.0 35.0 41.0 32.0 41.0 66-67 36.99279525864285 39.0 35.0 41.0 31.0 41.0 68-69 36.755665579616704 38.0 35.0 40.0 31.0 41.0 70-71 36.4605893854053 37.0 35.0 40.0 31.0 41.0 72-73 36.12389642325776 37.0 35.0 39.5 31.0 41.0 74-75 35.7791553405887 36.0 34.5 39.0 31.0 41.0 76-77 35.44172253472829 36.0 34.0 39.0 30.5 40.5 78-79 35.07401221218319 35.0 34.0 37.5 30.0 39.5 80-81 34.74912706547718 35.0 34.0 37.0 30.0 39.0 82-83 34.42665320023925 35.0 34.0 36.5 30.0 39.0 84-85 34.19890969793239 35.0 34.0 36.0 30.0 37.5 86-87 33.954514098723116 35.0 34.0 36.0 30.0 37.0 88-89 33.70353881498369 35.0 34.0 35.5 29.0 37.0 90-91 33.51893696587106 35.0 33.0 35.0 29.0 36.0 92-93 33.423695474915945 35.0 33.0 35.0 29.0 36.0 94-95 33.40191316773115 35.0 33.0 35.0 29.0 36.0 96-97 33.3678241089455 35.0 33.0 35.0 29.0 36.0 98-99 33.420047281723726 35.0 33.0 35.0 29.0 35.5 100 32.82297487342757 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 9.0 16 40.0 17 186.0 18 992.0 19 2959.0 20 6559.0 21 12483.0 22 19523.0 23 27325.0 24 36627.0 25 47913.0 26 56785.0 27 63018.0 28 72417.0 29 89018.0 30 104616.0 31 126330.0 32 162376.0 33 218183.0 34 308139.0 35 454811.0 36 735854.0 37 1319705.0 38 1953370.0 39 1158518.0 40 67840.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.08093324100144 20.489094110832625 14.695191904958516 23.734780743207423 2 14.1324378365832 21.07516394844789 41.90764373482337 22.88475448014554 3 17.807799938734277 26.236691809840046 30.44614109683817 25.509367154587505 4 12.315401337973032 18.488339149990264 39.519074035908275 29.677185476128425 5 13.439922304563387 38.151914337431215 35.50049510684542 12.907668251159981 6 29.451460957665105 38.173487800086534 19.403509001034497 12.971542241213871 7 26.316824867377537 32.945300995333824 23.31205932970211 17.425814807586537 8 24.058269758315095 36.91701213832644 21.648659935233113 17.376058168125347 9 24.895049290212985 18.04883941036835 21.6502640374768 35.40584726194187 10-11 23.60006015332569 27.42513320349318 29.272023402170188 19.702783241010945 12-13 24.358812395900962 24.831873048786267 29.159830824074014 21.649483731238753 14-15 21.72923597777616 26.463710821524984 26.561727535535763 25.245325665163094 16-17 21.66229509569564 29.436152152670175 27.23564533478659 21.665907416847595 18-19 21.708466030006516 29.043591788625537 28.329432097272427 20.91851008409552 20-21 22.597423695233072 28.172773907047176 28.037961813251417 21.19184058446833 22-23 22.291885058735478 27.99503185131534 27.876711131611604 21.836371958337576 24-25 22.056825400120843 28.13880013588701 27.923188288120848 21.881186175871296 26-27 22.02621250410291 28.32347780984192 27.78548066743131 21.864829018623865 28-29 21.932162464811178 28.417670377157478 27.838127932639225 21.81203922539212 30-31 22.286125161671823 28.188316706677945 27.759237125900256 21.76632100574998 32-33 22.04870613909378 28.289717171945316 27.733778903536493 21.92779778542441 34-35 22.191647915797056 28.285934243886214 27.77748845488226 21.74492938543447 36-37 22.144302262831353 28.12317708140616 27.84293393913655 21.889586716625935 38-39 21.916537592796303 28.225009029940885 27.97707610550318 21.881377271759632 40-41 22.154424621333167 28.08399617691964 27.924080406423297 21.8374987953239 42-43 22.009453381075215 28.07185605396878 27.888245187679427 22.03044537727658 44-45 22.032159128517623 28.117552551814125 27.902479254656154 21.9478090650121 46-47 21.967515426521807 28.03465877139014 27.849506721503463 22.14831908058459 48-49 21.8335393340737 28.0285452082164 28.07126490266788 22.066650555042024 50-51 21.74470816527604 28.058629112312637 28.077837425730017 22.1188252966813 52-53 21.83835920625828 27.933256240999206 28.027569432175696 22.20081512056682 54-55 21.906407611806507 27.711166070869286 28.138955912731916 22.243470404592287 56-57 21.816176921004427 27.651565882146922 28.123681929160654 22.408575267687993 58-59 21.697299185897815 27.647173897719306 28.280832100983446 22.374694815399433 60-61 21.691888346915622 27.43244583338202 28.534667863861348 22.34099795584101 62-63 21.581550110455222 27.62711784142931 28.52963423908194 22.261697809033524 64-65 21.41069490495585 27.87318322913823 28.30231831003121 22.413803555874708 66-67 21.334077651351947 28.093764190601178 28.017295989284513 22.55486216876236 68-69 21.37966326182497 28.223001437165312 27.99398891329617 22.403346387713547 70-71 21.413098657253354 28.203477652867203 27.76710720386092 22.61631648601852 72-73 21.637683914777302 28.085729790267195 27.5051252035366 22.7714610914189 74-75 21.775766669159275 27.96488174596029 27.53739843258238 22.721953152298063 76-77 21.93840079477458 27.62318608543891 27.629240195533306 22.809172924253208 78-79 22.223026822159753 27.455895858934294 27.545236218589924 22.775841100316033 80-81 22.516104584447678 27.429641305265523 27.20755753350269 22.846696576784105 82-83 22.260311089744995 27.48314592546639 27.356644784130207 22.899898200658406 84-85 22.38606988697958 27.593885362536554 27.34685326864046 22.67319148184341 86-87 22.13745291406503 27.83153264094335 27.492263882110805 22.538750562880814 88-89 21.94118462671693 27.971783872784783 27.490506521079773 22.59652497941852 90-91 21.792563036150344 28.06458082631368 27.79299582691184 22.349860310624134 92-93 21.797795795304566 27.744902569933377 28.152357303020263 22.30494433174179 94-95 21.47214529838751 27.77504288790777 28.512416329210183 22.24039548449454 96-97 21.78362293195596 27.729714468923294 28.51058615715066 21.97607644197009 98-99 23.177223882115282 29.592147406250184 28.838789371751115 18.39183933988341 100 22.265886795738147 30.888521872776337 22.56441542220477 24.28117590928074 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2166.0 1 1684.0 2 1343.0 3 1464.5 4 1459.5 5 1618.5 6 1971.5 7 2378.5 8 2733.0 9 3080.0 10 3348.5 11 3501.0 12 3744.5 13 4196.5 14 4884.5 15 5817.0 16 6887.0 17 8162.5 18 9663.0 19 11442.5 20 13748.0 21 16996.0 22 21684.0 23 27695.0 24 35741.0 25 46276.0 26 59440.0 27 74559.5 28 89730.0 29 105755.5 30 121624.5 31 137851.5 32 155312.5 33 171576.0 34 187572.5 35 202850.0 36 219630.5 37 235741.0 38 246606.5 39 254841.5 40 265185.0 41 274888.0 42 281645.5 43 287371.0 44 291585.5 45 295539.0 46 296489.0 47 295779.0 48 294566.0 49 288908.0 50 280168.0 51 268699.0 52 253738.0 53 237556.5 54 220374.5 55 201647.0 56 182488.0 57 163374.5 58 144680.0 59 126137.5 60 106615.5 61 87686.0 62 69891.5 63 54295.0 64 41651.0 65 31916.5 66 24786.0 67 19438.5 68 15292.0 69 11827.0 70 9207.5 71 7167.5 72 5535.5 73 4197.0 74 3239.5 75 2604.5 76 2058.0 77 1601.0 78 1277.5 79 1008.0 80 770.0 81 590.0 82 458.0 83 317.5 84 229.5 85 182.5 86 155.0 87 130.0 88 88.0 89 58.5 90 42.0 91 32.5 92 27.0 93 19.5 94 14.0 95 10.0 96 8.0 97 8.0 98 6.0 99 8.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02075054817923875 3 0.012419103732444533 4 0.004442490820863016 5 0.009268199699755748 6 0.008927561425951556 7 0.0031509040326887843 8 0.009069494040036635 9 0.005464405642275594 10-11 0.0037966974267759 12-13 0.008842401857500506 14-15 0.005251506721147973 16-17 0.003768310903958884 18-19 0.005592144994952167 20-21 0.0044516469141105495 22-23 0.010493086249687854 24-25 0.009739800864439319 26-27 0.023330966083435208 28-29 0.019773214901083355 30-31 0.015615373031573086 32-33 0.012913997422489037 34-35 0.008695645322534307 36-37 0.010452791958692292 38-39 0.005244196326552282 40-41 0.0061661121633916835 42-43 0.0041385833360123815 44-45 0.00740191368331062 46-47 0.010025279126906154 48-49 0.007579917709871927 50-51 0.010478186462479713 52-53 0.001048409061555665 54-55 0.003113268684099531 56-57 6.043550270922659E-4 58-59 0.0028554468882767536 60-61 0.001048582945008116 62-63 0.007463598609019725 64-65 0.0035463825155461134 66-67 0.004105763237684086 68-69 0.005248233737807504 70-71 8.260686054652699E-4 72-73 5.980548737380255E-4 74-75 0.0 76-77 4.014660254558366E-5 78-79 5.682680270245543E-4 80-81 1.888952739141622E-4 82-83 0.0 84-85 9.843495157589308E-4 86-87 0.0033193612968616592 88-89 0.021937211749196328 90-91 0.002762043609677849 92-93 0.0014033629940508135 94-95 0.0013107880220918757 96-97 4.576201696556735E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2251.0 20-21 4161.0 22-23 4861.0 24-25 5578.0 26-27 7059.0 28-29 9186.0 30-31 12809.0 32-33 14584.0 34-35 19195.0 36-37 26788.0 38-39 30914.0 40-41 27820.0 42-43 28984.0 44-45 33551.0 46-47 39906.0 48-49 25411.0 50-51 25275.0 52-53 11109.0 54-55 11715.0 56-57 12313.0 58-59 13011.0 60-61 13717.0 62-63 52959.0 64-65 57652.0 66-67 61080.0 68-69 62080.0 70-71 62474.0 72-73 61502.0 74-75 63802.0 76-77 67290.0 78-79 70456.0 80-81 72410.0 82-83 72015.0 84-85 76252.0 86-87 93214.0 88-89 85715.0 90-91 89329.0 92-93 97277.0 94-95 120673.0 96-97 268091.0 98-99 490702.0 100-101 4640426.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.75468572755383 #Duplication Level Percentage of deduplicated Percentage of total 1 89.90141125746462 77.09467268847449 2 7.096048597619429 12.170388347926067 3 1.7279628552279835 4.44542734796887 4 0.608730829366004 2.0880608385981945 5 0.27954450829968225 1.1986125728051407 6 0.14243313444076575 0.7328585208694974 7 0.07596322411380779 0.4559941687511929 8 0.044725919344632825 0.3068365725819927 9 0.03387401898931707 0.2614370267482269 >10 0.08792563396400405 1.0976123293052744 >50 9.365614189594487E-4 0.0510414696870115 >100 3.9420813409510346E-4 0.05402007152272117 >500 2.4625808819747342E-5 0.016788639044187842 >1k 2.462580789123579E-5 0.026249405717095504 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.257978422552411E-5 0.0 0.0 0.0 3 0.0 4.257978422552411E-5 0.0 1.4193261408508038E-5 0.0 4 0.0 9.935282985955626E-5 0.0 2.8386522817016075E-5 0.0 5 0.0 9.935282985955626E-5 0.0 4.257978422552411E-5 0.0 6 1.4193261408508038E-5 9.935282985955626E-5 0.0 4.257978422552411E-5 0.0 7 2.8386522817016075E-5 1.135460912680643E-4 0.0 5.677304563403215E-5 0.0 8 2.8386522817016075E-5 1.4193261408508036E-4 0.0 5.677304563403215E-5 1.4193261408508038E-5 9 2.8386522817016075E-5 2.1289892112762054E-4 0.0 8.515956845104823E-5 2.8386522817016075E-5 10-11 2.8386522817016075E-5 2.1289892112762054E-4 0.0 8.515956845104823E-5 2.8386522817016075E-5 12-13 2.8386522817016075E-5 2.1289892112762054E-4 0.0 1.0644946056381029E-4 2.8386522817016075E-5 14-15 2.8386522817016075E-5 2.696719667616527E-4 0.0 1.135460912680643E-4 2.8386522817016075E-5 16-17 4.257978422552411E-5 2.838652281701607E-4 0.0 1.135460912680643E-4 4.257978422552411E-5 18-19 4.257978422552411E-5 2.9096185887441474E-4 0.0 1.2773935267657233E-4 4.257978422552411E-5 20-21 4.257978422552411E-5 3.335416430999389E-4 0.0 1.6322250619784244E-4 4.257978422552411E-5 22-23 4.257978422552411E-5 3.5483153521270093E-4 0.0 2.696719667616527E-4 4.9676414929778135E-5 24-25 4.257978422552411E-5 3.76121427325463E-4 0.0 5.819237177488295E-4 5.677304563403215E-5 26-27 4.257978422552411E-5 3.90314688733971E-4 0.0 0.0014335194022593117 5.677304563403215E-5 28-29 4.257978422552411E-5 4.0450795014247904E-4 0.0 0.007075340812141256 5.677304563403215E-5 30-31 4.257978422552411E-5 4.8257088788927326E-4 0.0 0.026505915680388757 5.677304563403215E-5 32-33 4.257978422552411E-5 5.251506721147974E-4 0.0 0.08374024231019742 6.386967633828617E-5 34-35 5.677304563403215E-5 5.748270870445755E-4 0.0 0.15808454556796253 7.096630704254018E-5 36-37 5.677304563403215E-5 6.245035019743537E-4 0.0 0.26735136852136165 7.096630704254018E-5 38-39 5.677304563403215E-5 6.245035019743537E-4 0.0 0.39279141284975566 7.096630704254018E-5 40-41 5.677304563403215E-5 6.386967633828617E-4 0.0 0.5073665155699368 7.096630704254018E-5 42-43 5.677304563403215E-5 6.599866554956237E-4 0.0 0.6882312456985548 7.096630704254018E-5 44-45 5.677304563403215E-5 7.096630704254019E-4 0.0 0.8590968231648788 7.096630704254018E-5 46-47 5.677304563403215E-5 7.380495932424179E-4 0.0 1.0511671331755137 7.096630704254018E-5 48-49 5.677304563403215E-5 7.380495932424179E-4 0.0 1.1822135157602685 7.096630704254018E-5 50-51 6.386967633828617E-5 8.444990538062282E-4 0.0 1.5093256114421532 7.096630704254018E-5 52-53 7.096630704254018E-5 8.515956845104822E-4 0.0 1.9294816322875123 9.225619915530224E-5 54-55 7.096630704254018E-5 8.728855766232443E-4 0.0 2.473920946656472 1.135460912680643E-4 56-57 7.096630704254018E-5 8.941754687360064E-4 0.0 3.075417171887634 1.135460912680643E-4 58-59 7.096630704254018E-5 9.225619915530224E-4 0.0 3.6985510241360666 1.135460912680643E-4 60-61 7.096630704254018E-5 9.367552529615305E-4 0.0 4.305632297731477 1.135460912680643E-4 62-63 8.515956845104823E-5 9.367552529615305E-4 0.0 4.759234739085985 1.135460912680643E-4 64-65 8.515956845104823E-5 0.0010786878670466108 0.0 4.782362658551149 1.135460912680643E-4 66-67 8.515956845104823E-5 0.0010999777591593728 0.0 4.789842507313432 1.135460912680643E-4 68-69 8.515956845104823E-5 0.001149654174089151 0.0 4.79605915581036 1.135460912680643E-4 70-71 9.225619915530224E-5 0.0011851373276104212 0.0 4.801906779510665 1.135460912680643E-4 72-73 9.935282985955626E-5 0.0012277171118359451 0.0 4.807009256987023 1.135460912680643E-4 74-75 9.935282985955626E-5 0.0012490070039487071 0.0 4.8119981883721135 1.135460912680643E-4 76-77 9.935282985955626E-5 0.0012773935267657234 0.0 4.8154684407864945 1.135460912680643E-4 78-79 9.935282985955626E-5 0.0012773935267657234 0.0 4.817320661400304 1.135460912680643E-4 80-81 9.935282985955626E-5 0.0012773935267657234 0.0 4.81826451328397 1.135460912680643E-4 82-83 9.935282985955626E-5 0.0012844901574699773 0.0 4.818967079723691 1.135460912680643E-4 84-85 9.935282985955626E-5 0.0013057800495827395 0.0 4.8193077179974955 1.135460912680643E-4 86-87 9.935282985955626E-5 0.0013483598338082635 0.0 4.8194212640887635 1.135460912680643E-4 88 9.935282985955626E-5 0.0014193261408508037 0.0 4.8194212640887635 1.135460912680643E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5815 0.0 38.24951 1 GTATCAA 9555 0.0 31.950144 1 TCAACGC 9790 0.0 29.661856 4 ATCAACG 9915 0.0 29.203064 3 CAACGCA 10260 0.0 28.302475 5 AACGCAG 10640 0.0 27.20933 6 TATCAAC 11350 0.0 26.168095 2 ACGCAGA 12820 0.0 22.54926 7 CGCAGAG 13325 0.0 21.661797 8 GTACATG 20975 0.0 19.607183 1 TACATGG 20655 0.0 19.17262 2 ACATGGG 20985 0.0 18.078539 3 GCAGAGT 16890 0.0 16.934715 9 GTGTAGA 10285 0.0 16.676594 94 CATGGGG 15165 0.0 16.618513 4 TAGCGCG 250 0.002621137 15.832501 94 AGAGTAC 14430 0.0 15.349306 10-11 CAGAGTA 16400 0.0 15.074073 10-11 TGTAGAT 10775 0.0 14.326393 94 TATACTG 4235 0.0 14.20768 5 >>END_MODULE