##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138849_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8949142 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.95365030524714 34.0 31.0 34.0 31.0 34.0 2 33.063379148526195 34.0 33.0 34.0 31.0 34.0 3 33.12447316178467 34.0 33.0 34.0 31.0 34.0 4 36.48333728529506 37.0 37.0 37.0 35.0 37.0 5 36.44725740188277 37.0 37.0 37.0 35.0 37.0 6 36.47713255639479 37.0 37.0 37.0 35.0 37.0 7 36.43411379549011 37.0 37.0 37.0 35.0 37.0 8 36.41760785559107 37.0 37.0 37.0 35.0 37.0 9 38.20971015992371 39.0 39.0 39.0 37.0 39.0 10-11 38.16639991856202 39.0 39.0 39.0 37.0 39.0 12-13 38.13996352946461 39.0 39.0 39.0 37.0 39.0 14-15 39.608773612040125 41.0 40.0 41.0 37.0 41.0 16-17 39.5891472053969 41.0 40.0 41.0 37.0 41.0 18-19 39.60141380033974 41.0 40.0 41.0 37.0 41.0 20-21 39.580349015804174 41.0 40.0 41.0 37.0 41.0 22-23 39.5055488448601 41.0 39.0 41.0 37.0 41.0 24-25 39.353690950262916 41.0 39.0 41.0 36.0 41.0 26-27 39.35923468636176 41.0 39.0 41.0 36.0 41.0 28-29 39.27956459615203 41.0 39.0 41.0 36.0 41.0 30-31 39.19054982275643 41.0 39.0 41.0 36.0 41.0 32-33 38.992763360563615 40.5 39.0 41.0 35.0 41.0 34-35 38.91540203890362 40.0 38.5 41.0 35.0 41.0 36-37 39.10359944891515 41.0 39.0 41.0 35.0 41.0 38-39 39.17432370212005 41.0 39.0 41.0 35.0 41.0 40-41 39.15239782008185 41.0 39.0 41.0 35.0 41.0 42-43 39.003786019073985 41.0 39.0 41.0 35.0 41.0 44-45 39.028370383061045 41.0 39.0 41.0 35.0 41.0 46-47 38.9829287451295 40.0 39.0 41.0 35.0 41.0 48-49 38.92078944860987 40.0 39.0 41.0 35.0 41.0 50-51 38.85115144400483 40.0 38.0 41.0 35.0 41.0 52-53 38.73665776342788 40.0 38.0 41.0 35.0 41.0 54-55 38.604971579621825 40.0 38.0 41.0 35.0 41.0 56-57 38.46112599343671 40.0 37.5 41.0 34.0 41.0 58-59 38.30290639969371 40.0 37.0 41.0 34.0 41.0 60-61 38.12471893974129 40.0 37.0 41.0 34.0 41.0 62-63 37.89996124927555 39.0 36.0 41.0 34.0 41.0 64-65 37.63234807255942 39.0 36.0 41.0 33.5 41.0 66-67 37.317255695467445 39.0 35.0 40.5 33.0 41.0 68-69 36.99233150222063 38.0 35.0 40.0 33.0 41.0 70-71 36.63734765512491 37.0 35.0 40.0 32.5 41.0 72-73 36.29885470443169 37.0 35.0 39.0 32.0 41.0 74-75 35.96175558494791 36.0 35.0 39.0 32.0 40.5 76-77 35.10103703776895 35.0 34.0 38.0 30.5 39.0 78-79 35.31074106562262 35.0 34.5 37.0 32.0 39.0 80-81 35.08891633200669 35.0 34.0 37.0 32.0 39.0 82-83 34.81963375983467 35.0 34.0 36.5 31.5 39.0 84-85 34.55688161991087 35.0 34.0 36.0 31.0 37.0 86-87 34.33819273665289 35.0 34.0 36.0 31.0 37.0 88-89 34.137314589280024 35.0 34.0 35.5 31.0 37.0 90-91 33.94192866925785 35.0 34.0 35.0 31.0 36.0 92-93 33.81006752382169 35.0 34.0 35.0 31.0 36.0 94-95 33.73391016600557 35.0 34.0 35.0 31.0 36.0 96-97 33.70688973302575 35.0 34.0 35.0 31.0 35.5 98-99 33.72604458414136 35.0 34.0 35.0 31.0 35.0 100-101 32.34742823683741 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 0.0 15 0.0 16 0.0 17 2.0 18 2.0 19 6.0 20 24.0 21 113.0 22 632.0 23 2263.0 24 5870.0 25 12546.0 26 22271.0 27 36275.0 28 53411.0 29 73476.0 30 96184.0 31 123661.0 32 159440.0 33 212019.0 34 309575.0 35 468482.0 36 846207.0 37 1904161.0 38 2930062.0 39 1593007.0 40 99451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.103399879764986 21.332977246975688 15.688490737657473 23.875132135601856 2 13.617026746527511 21.683460209391605 41.5454940230115 23.15401902106938 3 16.714678728905792 26.708991031540464 31.497898122054185 25.07843211749956 4 11.801122789452394 18.947474282445018 39.46004867506822 29.79135425303437 5 12.94642837188825 38.002243791023496 35.82825835778634 13.223069479301921 6 29.183195256750928 38.67182768400092 18.995680031824286 13.149297027423865 7 25.96001446396613 33.25093059262928 23.312194607390033 17.47686033601456 8 24.37325645387931 36.67190184460405 21.28928408802027 17.665557613496365 9 25.29789601094904 17.096508965821798 21.594359921940722 36.01123510128844 10-11 23.746443792364406 27.189919925266565 29.148717083429244 19.91491919893979 12-13 24.74593648104734 24.78195111485573 29.250877737972587 21.221234666124342 14-15 21.921811670343256 26.199863291331045 27.041391527526613 24.83693351079908 16-17 21.282972800451443 29.350644126319438 27.66241439468329 21.703968678545838 18-19 21.28032176496046 28.34399413306819 29.648722709810922 20.72696139216043 20-21 22.192293777892626 27.40296264221311 29.56996291459182 20.834780665302446 22-23 21.89075348049629 27.33936164518064 29.392825680098873 21.377059194224195 24-25 21.68511057711734 27.5529795885702 29.41803949744426 21.343870336868203 26-27 21.6377954358451 27.66076493888822 29.358669074056305 21.34277055121037 28-29 21.498289945036174 27.750064150558234 29.356905874227195 21.394740030178397 30-31 21.864876108309332 27.529222472760388 29.28320557834191 21.322695840588374 32-33 21.66917538977811 27.750513861814024 29.142518834563152 21.437791913844713 34-35 21.72902603800339 27.782083068461638 29.171590343682475 21.317300549852494 36-37 21.677076718591252 27.726362809745158 29.149364470371626 21.447196001291964 38-39 21.579604213197847 27.773890056089474 29.204660044929092 21.44184568578359 40-41 21.851143488892582 27.69088124578511 29.002222558130335 21.455752707191973 42-43 21.822568895883858 27.76431366120571 28.766612991828133 21.6465044510823 44-45 21.891743620973216 27.907996184746064 28.560008684753324 21.640251509527396 46-47 21.947060248916276 27.897592068412198 28.27031159298315 21.885036089688377 48-49 21.873362754528415 28.073339837530796 28.221726213375714 21.831571194565072 50-51 21.90120295192161 28.14615658457501 28.096191990088247 21.85644847341513 52-53 22.07156712877962 28.0055986773191 27.999958631647953 21.922875562253328 54-55 22.029058472883737 27.982813194363032 27.981637841749674 22.006490491003554 56-57 22.051289914151514 28.107872811294904 27.912256992869978 21.9285802816836 58-59 21.953776659386364 28.18608797796171 27.98526665515913 21.8748687074928 60-61 22.091855417099847 28.129154339163186 27.92178762064552 21.85720262309145 62-63 22.032619530912655 28.19897614421406 27.87593680812354 21.892467516749743 64-65 22.029200783582052 28.18943074046356 27.81138177890565 21.96998669704874 66-67 22.094655695406686 28.155619368587793 27.71829823673263 22.03142669927289 68-69 22.030010595749665 28.1178183450658 27.820536889972875 22.03163416921166 70-71 22.025897511604352 27.97492879153751 27.857769416139405 22.141404280718728 72-73 22.12195054667169 27.96289095597595 27.814889595043894 22.10026890230846 74-75 22.000669842417285 28.06414944633897 27.773409192224552 22.161771519019194 76-77 22.09384206010262 28.009567253150525 27.737212982740296 22.159377704006562 78-79 22.072839993151366 27.99121881255492 27.749886335278223 22.186054859015496 80-81 22.070440586697618 28.00411863991607 27.76179944381812 22.163641329568193 82-83 22.095964344817208 27.952058757157143 27.831779761325322 22.120197136700327 84-85 22.216799526971972 27.924066671005132 27.77787757960242 22.081256222420475 86-87 22.086764690285197 27.897411059298516 27.85157871291854 22.164245537497745 88-89 22.099784114917686 27.874577652708886 27.833450549633028 22.192187682740403 90-91 22.169906439447352 27.895173359469705 27.82565432326584 22.1092658778171 92-93 22.202370870023916 27.764238045322102 27.889274339179543 22.144116745474435 94-95 22.060356222695194 27.7710615735036 27.95147305925843 22.217109144542775 96-97 22.063550236149315 27.829145102918744 27.972273731449555 22.13503092948239 98-99 22.30433666761264 28.34086642437451 27.983781178173757 21.37101572983909 100-101 20.08206108807202 32.09465078638066 26.161178020642005 21.662110104905313 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1851.0 1 1666.5 2 2355.0 3 3396.5 4 4494.5 5 6622.0 6 8381.5 7 10296.0 8 12134.5 9 12637.0 10 11821.0 11 10966.5 12 12253.5 13 16636.0 14 27166.5 15 41620.5 16 53271.0 17 59451.5 18 59827.0 19 56212.0 20 50999.0 21 45628.5 22 42566.5 23 44417.5 24 51515.5 25 63376.5 26 79490.5 27 98052.0 28 118307.0 29 139928.0 30 160967.5 31 182134.0 32 204727.5 33 226724.5 34 247628.5 35 267115.5 36 287559.0 37 306986.5 38 322000.5 39 333725.0 40 343764.5 41 353325.0 42 358525.5 43 362044.5 44 366448.5 45 370682.0 46 372121.0 47 369435.0 48 363389.0 49 353076.0 50 341591.0 51 328622.5 52 311376.0 53 293230.5 54 275824.0 55 255258.0 56 232735.0 57 208473.0 58 183720.5 59 159086.0 60 133365.0 61 109555.5 62 87207.0 63 66815.0 64 49768.5 65 37025.5 66 27858.5 67 21102.5 68 16182.5 69 11643.5 70 8041.5 71 5723.5 72 4005.5 73 2752.5 74 1877.0 75 1271.0 76 833.5 77 520.0 78 334.0 79 212.0 80 139.5 81 89.5 82 60.5 83 39.5 84 30.0 85 24.5 86 17.5 87 11.5 88 5.5 89 3.0 90 2.5 91 2.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.234851117570824E-5 2 0.03069568009983527 3 2.234851117570824E-5 4 2.234851117570824E-5 5 2.234851117570824E-5 6 2.234851117570824E-5 7 6.704553352712472E-5 8 7.48675124386226E-4 9 5.140157570412895E-4 10-11 2.234851117570824E-5 12-13 2.234851117570824E-5 14-15 0.0020672372837530124 16-17 5.028415014534354E-5 18-19 1.117425558785412E-5 20-21 1.620301460997891E-4 22-23 0.002005945084822701 24-25 8.10354474755055E-4 26-27 0.014524084655623219 28-29 0.31605013127969456 30-31 0.3169408386246863 32-33 0.3346114660981189 34-35 0.21564109625339772 36-37 0.07271890061042303 38-39 0.06418054703522508 40-41 0.026182922550274955 42-43 0.009950803664082738 44-45 0.013141509093355446 46-47 0.009426736581629647 48-49 0.006444990174201161 50-51 0.006815059515103145 52-53 0.0026936805952601202 54-55 9.572367797270336E-4 56-57 0.003206914131300716 58-59 0.003548236988226876 60-61 0.0028080509554393373 62-63 0.0019920195187844623 64-65 6.697237661145173E-4 66-67 0.008126230336149108 68-69 0.012213965484209648 70-71 0.0122889355797603 72-73 0.010271617288471672 74-75 0.010376109779639275 76-77 0.00930014749672369 78-79 0.002414957638801889 80-81 0.0021061871161251735 82-83 0.0016731062822098884 84-85 0.0 86-87 0.0028211339558541324 88-89 7.157518296585084E-6 90-91 0.009058995237753656 92-93 0.01956137641171673 94-95 0.0016130578827898373 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 112.0 20-21 428.0 22-23 1074.0 24-25 2911.0 26-27 4221.0 28-29 7098.0 30-31 16540.0 32-33 22022.0 34-35 32094.0 36-37 45920.0 38-39 54673.0 40-41 58231.0 42-43 69372.0 44-45 84190.0 46-47 83110.0 48-49 72527.0 50-51 63517.0 52-53 61901.0 54-55 66581.0 56-57 68730.0 58-59 68729.0 60-61 66803.0 62-63 66957.0 64-65 73247.0 66-67 77283.0 68-69 76414.0 70-71 73466.0 72-73 71527.0 74-75 73313.0 76-77 75076.0 78-79 79129.0 80-81 80071.0 82-83 79008.0 84-85 80472.0 86-87 84696.0 88-89 90443.0 90-91 96714.0 92-93 98042.0 94-95 110993.0 96-97 173544.0 98-99 769209.0 100-101 5668754.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.47240683975359 #Duplication Level Percentage of deduplicated Percentage of total 1 89.24408685461893 75.38662812825676 2 7.411070423343593 12.5206191183749 3 1.8538083228640878 4.697869525556895 4 0.7005185461883019 2.366979505296438 5 0.31338492981096283 1.323618964421964 6 0.17022585377023522 0.8627632544594229 7 0.09313249312885025 0.5506988094706556 8 0.057327096428105274 0.3874046249933355 9 0.0375106058776848 0.2851750044454899 >10 0.11702904410803841 1.47391214820204 >50 0.001552116697972193 0.08578008148780944 >100 3.321409776274139E-4 0.04856488070502402 >500 2.1572185614378437E-5 0.009985954329229696 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.469702235141648E-5 0.0 1.117425558785412E-5 0.0 3 0.0 4.469702235141648E-5 0.0 1.117425558785412E-5 0.0 4 0.0 1.229168114663953E-4 0.0 3.352276676356236E-5 0.0 5 0.0 1.229168114663953E-4 0.0 3.352276676356236E-5 0.0 6 0.0 1.229168114663953E-4 0.0 3.352276676356236E-5 0.0 7 0.0 1.3409106705424944E-4 0.0 6.704553352712472E-5 0.0 8 0.0 1.4526532264210357E-4 0.0 6.704553352712472E-5 0.0 9 0.0 2.9053064528420714E-4 0.0 6.704553352712472E-5 0.0 10-11 0.0 2.9053064528420714E-4 0.0 7.821978911497885E-5 0.0 12-13 0.0 2.9053064528420714E-4 0.0 7.821978911497885E-5 0.0 14-15 0.0 3.8551181778096713E-4 0.0 7.821978911497885E-5 0.0 16-17 0.0 3.910989455748942E-4 0.0 7.821978911497885E-5 0.0 18-19 0.0 4.190345845445295E-4 0.0 9.498117249676002E-5 0.0 20-21 0.0 4.749058624838001E-4 0.0 1.1732968367246826E-4 5.58712779392706E-6 22-23 0.0 5.58712779392706E-4 0.0 1.396781948481765E-4 2.234851117570824E-5 24-25 0.0 5.922355461562684E-4 0.0 2.514207507267177E-4 3.352276676356236E-5 26-27 0.0 6.034098017441225E-4 0.0 3.128791564599154E-4 3.352276676356236E-5 28-29 0.0 6.034098017441225E-4 0.0 8.157206579133508E-4 3.352276676356236E-5 30-31 0.0 7.095652298287367E-4 0.0 0.002145457072867991 3.352276676356236E-5 32-33 0.0 7.151523576226637E-4 0.0 0.004385895318232742 3.352276676356236E-5 34-35 0.0 7.598493799740801E-4 0.0 0.008525957013532695 3.352276676356236E-5 36-37 0.0 8.101335301194237E-4 0.0 0.014548880775386065 3.352276676356236E-5 38-39 0.0 8.827661914404756E-4 0.0 0.022946333849658437 3.352276676356236E-5 40-41 0.0 0.0010056830029068708 0.0 0.031785170019651046 4.469702235141648E-5 42-43 0.0 0.001028031514082579 0.0 0.03976917563717282 5.028415014534354E-5 44-45 0.0 0.001106251303197558 0.0 0.04983159279403545 5.5871277939270605E-5 46-47 0.0 0.0011732968367246827 0.0 0.059676111966934925 5.5871277939270605E-5 48-49 0.0 0.0011788839645186099 0.0 0.06954297965101013 5.5871277939270605E-5 50-51 0.0 0.0013911948206878381 0.0 0.07837622869320879 5.5871277939270605E-5 52-53 0.0 0.0014079562040696192 0.0 0.08649432537778481 5.5871277939270605E-5 54-55 0.0 0.0014079562040696192 0.0 0.09475210025720901 5.5871277939270605E-5 56-57 0.0 0.0014079562040696192 0.0 0.10108231604772838 5.5871277939270605E-5 58-59 0.0 0.0014079562040696192 0.0 0.10674766363077041 6.145840573319766E-5 60-61 0.0 0.0014191304596574733 0.0 0.1118040142842744 6.704553352712472E-5 62-63 0.0 0.0014805888653906711 0.0 0.11702797877159621 6.704553352712472E-5 64-65 0.0 0.0017096611049416805 0.0 0.12208991655289413 6.704553352712472E-5 66-67 0.0 0.0017320096161173887 0.0 0.12786141956402075 6.704553352712472E-5 68-69 0.0 0.0017822937662627324 0.0 0.13329210777971787 6.704553352712472E-5 70-71 0.0 0.0018102294052323676 0.0 0.13852165939483363 6.704553352712472E-5 72-73 0.0 0.0018214036608202215 0.0 0.1427734636460121 7.821978911497885E-5 74-75 0.0 0.0018437521719959298 0.0 0.1462207214948651 7.821978911497885E-5 76-77 0.0 0.0018996234499352004 0.0 0.14912044081991324 7.821978911497885E-5 78-79 0.0 0.0019331462166987628 0.0 0.15194752748364032 7.821978911497885E-5 80-81 0.0 0.0019331462166987628 0.0 0.15323815400403748 7.821978911497885E-5 82-83 0.0 0.0019331462166987628 0.0 0.15372423412210914 7.821978911497885E-5 84-85 0.0 0.0019331462166987628 0.0 0.15403152615077514 7.821978911497885E-5 86-87 0.0 0.0019890174946380333 0.0 0.15411533306768405 7.821978911497885E-5 88-89 0.0 0.002123108561692283 0.0 0.15413768157885974 7.821978911497885E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12320 0.0 51.99576 1 GTATCAA 23440 0.0 38.58188 1 TCAACGC 28805 0.0 30.984676 4 ATCAACG 28765 0.0 30.983114 3 CAACGCA 29500 0.0 30.240185 5 TATCAAC 29970 0.0 29.946882 2 AACGCAG 30405 0.0 29.396406 6 ACGCAGA 34865 0.0 25.611404 7 CGCAGAG 35380 0.0 25.238598 8 GCAGAGT 40840 0.0 21.781994 9 GTGGTAT 5870 0.0 21.738283 1 GAGTACT 24480 0.0 19.953068 12-13 TGGTATC 5925 0.0 19.94655 2 AGAGTAC 37125 0.0 19.14155 10-11 CAGAGTA 39825 0.0 19.036987 10-11 GTACATG 26820 0.0 18.903404 1 GTACTTT 26655 0.0 18.373474 14-15 TACATGG 27175 0.0 18.231016 2 AGTACTT 26500 0.0 17.79402 12-13 ACATGGG 27670 0.0 17.450533 3 >>END_MODULE