##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138848_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7755738 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.96168591564078 34.0 31.0 34.0 31.0 34.0 2 33.071896575155066 34.0 33.0 34.0 31.0 34.0 3 33.13107044100768 34.0 33.0 34.0 31.0 34.0 4 36.48570271455792 37.0 37.0 37.0 35.0 37.0 5 36.45051083468781 37.0 37.0 37.0 35.0 37.0 6 36.4815160078899 37.0 37.0 37.0 35.0 37.0 7 36.44068842965041 37.0 37.0 37.0 35.0 37.0 8 36.42736629318835 37.0 37.0 37.0 35.0 37.0 9 38.22231759247153 39.0 39.0 39.0 37.0 39.0 10-11 38.18042267544365 39.0 39.0 39.0 37.0 39.0 12-13 38.15104384650436 39.0 39.0 39.0 37.0 39.0 14-15 39.622840985603176 41.0 40.0 41.0 37.0 41.0 16-17 39.602140698925105 41.0 40.0 41.0 37.0 41.0 18-19 39.61553858575419 41.0 40.0 41.0 37.0 41.0 20-21 39.59646983852738 41.0 40.0 41.0 37.0 41.0 22-23 39.52137534269839 41.0 39.5 41.0 37.0 41.0 24-25 39.36760743843601 41.0 39.0 41.0 36.0 41.0 26-27 39.37267285296112 41.0 39.0 41.0 36.5 41.0 28-29 39.293663985811406 41.0 39.0 41.0 36.0 41.0 30-31 39.201648498705225 41.0 39.0 41.0 36.0 41.0 32-33 39.00290270644052 40.5 39.0 41.0 35.0 41.0 34-35 38.9246393938947 40.0 38.5 41.0 35.0 41.0 36-37 39.11115057629383 41.0 39.0 41.0 35.0 41.0 38-39 39.177315707660085 41.0 39.0 41.0 35.0 41.0 40-41 39.15914663349855 41.0 39.0 41.0 35.0 41.0 42-43 39.01497793902538 41.0 39.0 41.0 35.0 41.0 44-45 39.036906548031745 41.0 39.0 41.0 35.0 41.0 46-47 38.98856256546517 40.0 39.0 41.0 35.0 41.0 48-49 38.922112591843735 40.0 39.0 41.0 35.0 41.0 50-51 38.84900996525304 40.0 38.0 41.0 35.0 41.0 52-53 38.73440516594413 40.0 38.0 41.0 35.0 41.0 54-55 38.60348538930117 40.0 38.0 41.0 35.0 41.0 56-57 38.45515524979748 40.0 37.5 41.0 34.0 41.0 58-59 38.293581283630715 40.0 37.0 41.0 34.0 41.0 60-61 38.11278208552632 40.0 37.0 41.0 34.0 41.0 62-63 37.888379471857945 39.0 36.0 41.0 34.0 41.0 64-65 37.62472102374507 39.0 36.0 41.0 33.5 41.0 66-67 37.31229922858212 39.0 35.0 40.5 33.0 41.0 68-69 36.989539479805565 38.0 35.0 40.0 33.0 41.0 70-71 36.64068005228599 37.0 35.0 40.0 33.0 41.0 72-73 36.30459099861754 37.0 35.0 39.0 32.0 41.0 74-75 35.965037420528205 36.0 35.0 39.0 32.0 40.5 76-77 35.10589875370604 35.0 34.0 38.0 31.0 39.0 78-79 35.316366158576855 35.0 34.5 37.0 32.0 39.0 80-81 35.09668227995353 35.0 34.5 37.0 32.0 39.0 82-83 34.825563651787824 35.0 34.0 36.5 31.5 39.0 84-85 34.564366097429435 35.0 34.0 36.0 31.0 37.0 86-87 34.3467483810306 35.0 34.0 36.0 31.0 37.0 88-89 34.148998085345845 35.0 34.0 35.5 31.0 37.0 90-91 33.95300955162597 35.0 34.0 35.0 31.0 36.0 92-93 33.82133134834406 35.0 34.0 35.0 31.0 36.0 94-95 33.74481318758102 35.0 34.0 35.0 31.0 36.0 96-97 33.71768439849456 35.0 34.0 35.0 31.0 35.5 98-99 33.736288156522136 35.0 34.0 35.0 31.0 35.0 100-101 32.33972545150272 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 2.0 20 31.0 21 95.0 22 566.0 23 1897.0 24 5162.0 25 10849.0 26 19186.0 27 31209.0 28 45531.0 29 62499.0 30 81788.0 31 105994.0 32 136592.0 33 182555.0 34 267038.0 35 403292.0 36 732075.0 37 1654535.0 38 2537714.0 39 1392180.0 40 84946.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.14934701232739 21.208277331770965 15.532813391275823 24.10956226462582 2 13.55369455624814 21.62161709005612 41.64035462539697 23.18433372829877 3 16.69450842576385 26.75195494018878 31.402590289303294 25.150946344744067 4 11.752050353441632 19.049616954470856 39.27578246603546 29.922550226052046 5 12.909475914410198 37.98099394035667 35.79650779803389 13.31302234719924 6 29.09941751498504 38.643269961741865 19.007493292706197 13.249819230566901 7 25.853839236879452 33.20385923498665 23.227434050729435 17.714867477404457 8 24.347324014922727 36.56202687937598 21.33523714085382 17.755411964847468 9 25.301581067572286 17.023859456305026 21.467089598127007 36.20746987799568 10-11 23.716846804262858 27.176517566735754 29.070811829899363 20.035823799102033 12-13 24.72592550186713 24.70585648973702 29.175572975776127 21.39264503261972 14-15 21.88453285101409 26.11994650305119 26.98278304692136 25.012737599013356 16-17 21.28831391071432 29.29179881620489 27.61015269476751 21.809734578313282 18-19 21.28629796416537 28.26625267640552 29.588460827325523 20.858988532103588 20-21 22.182118894261333 27.340553436670895 29.475696766490817 21.001630902576956 22-23 21.82173433061429 27.372025059514606 29.34919564209042 21.457044967780682 24-25 21.673168407600986 27.56024912205216 29.387862574271523 21.378719896075328 26-27 21.62442635441395 27.745119185562793 29.284028497766197 21.34642596225706 28-29 21.457370256182326 27.804787268451115 29.318022393735237 21.419820081631322 30-31 21.96800786254039 27.560434203087965 29.212942073407916 21.25861586096373 32-33 21.558342592865777 27.809323080846276 29.15378899547731 21.478545330810633 34-35 21.656197062312167 27.829900622264137 29.248374279679567 21.265528035744133 36-37 21.58787354398452 27.788410647381006 29.197084295847652 21.426631512786816 38-39 21.504528703244873 27.684299777243293 29.29610667098272 21.515064848529118 40-41 21.7526928256737 27.60998818642406 29.132175147649868 21.505143840252373 42-43 21.79793301862816 27.670713196263886 28.90924142434841 21.62211236075954 44-45 21.774468869383906 27.91230968705673 28.669513195695927 21.64370824786344 46-47 21.93213230763298 27.803060155115134 28.299163538410944 21.965643998840942 48-49 21.87463982132052 27.94947470907162 28.272907878249747 21.902977591358113 50-51 21.822577161376504 28.04392181837208 28.183478020244017 21.950023000007402 52-53 21.96442458607097 27.998273583605627 28.151509767447504 21.885792062875904 54-55 21.984593859082135 27.974419059312584 28.05874658139499 21.982240500210292 56-57 22.040739828771553 28.090365255469795 27.906020984607867 21.962873931150785 58-59 21.877745766524 28.27900912833097 28.037964339727022 21.805280765418008 60-61 22.047290950803223 28.277324374554325 27.880881669188103 21.794503005454352 62-63 21.953318325589922 28.325848260725767 27.82447271262597 21.89636070105834 64-65 21.93289894447753 28.289528331963982 27.825071712058048 21.95250101150044 66-67 22.036896181376104 28.228727478523524 27.721488822023392 22.01288751807698 68-69 21.995879374228693 28.13058844875234 27.835411890134644 22.038120286884325 70-71 21.995992943157123 27.937456287599293 27.899627429292412 22.166923339951175 72-73 22.09970451702227 27.93417441156866 27.855765832760277 22.1103552386488 74-75 21.941274017227595 28.04768047404143 27.826924674107325 22.18412083462365 76-77 22.092812625684736 28.00697131348151 27.74116660379182 22.15904945704193 78-79 22.05435466705255 28.01803770764881 27.726326748710832 22.20128087658781 80-81 22.02756068879204 27.989009589118375 27.803167855204496 22.18026186688509 82-83 22.0935752228646 27.937422094508197 27.854636576158896 22.114366106468307 84-85 22.24109187347862 27.867075098737114 27.803838147221544 22.08799488056272 86-87 22.03373068313623 27.923689370846873 27.861597212865284 22.180982733151613 88-89 22.112931110576636 27.858545806108424 27.832813883491212 22.195709199823728 90-91 22.17307529736863 27.830839693472655 27.87990982625616 22.116175182902555 92-93 22.166885791978594 27.782343007156 27.907399141812856 22.14337205905255 94-95 22.03594357789365 27.796154135686557 27.962382602825407 22.205519683594385 96-97 22.03150643275308 27.819969393307296 27.968308253976602 22.18021591996302 98-99 22.22406883691203 28.38484243722006 27.994379576380485 21.396709149487428 100-101 20.06468897942178 32.115159281284946 26.16300523945943 21.657146499833843 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1748.0 1 1590.0 2 2230.5 3 3222.5 4 4367.0 5 6523.0 6 8237.0 7 9985.0 8 11706.0 9 12115.5 10 11231.0 11 10445.5 12 11724.5 13 15829.0 14 25447.5 15 38464.0 16 48400.5 17 53112.5 18 52945.5 19 49339.0 20 44163.5 21 39135.5 22 36605.5 23 38689.0 24 45118.5 25 55700.0 26 70093.0 27 86438.5 28 104511.0 29 123562.5 30 141804.5 31 160052.5 32 178639.5 33 196770.0 34 214626.5 35 230194.0 36 246692.5 37 262113.5 38 272981.0 39 282119.0 40 291899.0 41 300842.5 42 305874.0 43 310558.0 44 316148.5 45 321130.0 46 324428.5 47 326047.5 48 321027.0 49 310866.0 50 301714.5 51 290217.0 52 274983.5 53 260618.0 54 246032.5 55 227022.0 56 206352.5 57 185127.5 58 162764.5 59 140645.5 60 118083.0 61 95876.5 62 75242.0 63 57299.5 64 42655.0 65 31637.0 66 23954.5 67 18265.5 68 14098.5 69 10295.5 70 7201.0 71 5162.0 72 3571.5 73 2360.0 74 1585.5 75 1015.5 76 599.5 77 381.0 78 253.0 79 169.5 80 117.0 81 83.5 82 63.0 83 42.5 84 28.0 85 22.5 86 18.5 87 14.0 88 9.5 89 6.0 90 3.5 91 2.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.578735898505081E-5 2 0.029874655384181364 3 2.578735898505081E-5 4 2.578735898505081E-5 5 1.2893679492525406E-5 6 2.578735898505081E-5 7 5.157471797010162E-5 8 6.70471333611321E-4 9 3.739167052832367E-4 10-11 0.0 12-13 0.0 14-15 0.0020049671610877003 16-17 5.157471797010162E-5 18-19 0.0 20-21 2.127511979181844E-4 22-23 0.0019406910626792277 24-25 7.480621964705393E-4 26-27 0.014411849766078389 28-29 0.31375018614514655 30-31 0.3144046442703712 32-33 0.33219694962780705 34-35 0.21565852548640277 36-37 0.07389909918140027 38-39 0.06501380361735123 40-41 0.026058302130119154 42-43 0.01035933510911156 44-45 0.013658087220155333 46-47 0.010060642183960404 48-49 0.007301602101764452 50-51 0.007344523796499152 52-53 0.003289897164924148 54-55 0.0013909211206525021 56-57 0.0037340791477400103 58-59 0.004117809971362633 60-61 0.0032746096290256783 62-63 0.002146689477364797 64-65 5.728559269547001E-4 66-67 0.008034392243480513 68-69 0.01159728672968284 70-71 0.012123455395301127 72-73 0.010290305889663455 74-75 0.01038061989974868 76-77 0.00913420516671795 78-79 0.002448447774648331 80-81 0.001925536633931218 82-83 0.0017854908121216488 84-85 8.129187090233083E-6 86-87 0.002778573580615421 88-89 0.0 90-91 0.008570946026806078 92-93 0.01850156784764211 94-95 0.0014916716157786943 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 118.0 20-21 452.0 22-23 987.0 24-25 2829.0 26-27 3958.0 28-29 6913.0 30-31 16241.0 32-33 21505.0 34-35 30209.0 36-37 43176.0 38-39 50756.0 40-41 53627.0 42-43 63885.0 44-45 76532.0 46-47 74817.0 48-49 65173.0 50-51 57563.0 52-53 54956.0 54-55 59581.0 56-57 62721.0 58-59 62192.0 60-61 61376.0 62-63 62042.0 64-65 66011.0 66-67 71122.0 68-69 67787.0 70-71 63814.0 72-73 61547.0 74-75 62746.0 76-77 63599.0 78-79 66572.0 80-81 67676.0 82-83 65899.0 84-85 67763.0 86-87 71023.0 88-89 75830.0 90-91 81436.0 92-93 83149.0 94-95 93564.0 96-97 146517.0 98-99 661497.0 100-101 4886577.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.7965655931988 #Duplication Level Percentage of deduplicated Percentage of total 1 88.95869074394119 75.43391454753696 2 7.73801470668693 13.123141432734304 3 1.9310411074305782 4.9123696178820095 4 0.6767134122724359 2.295318930062279 5 0.3091648435411617 1.310805846722458 6 0.14125658249562165 0.7186843837836646 7 0.08286811923655471 0.49188523358992714 8 0.04499602539921561 0.30524067353582607 9 0.0341936370204475 0.26095526860269663 >10 0.08149067760418675 0.979133044229281 >50 0.001187937134806209 0.0656085881016074 >100 3.3606068527077877E-4 0.06592479983580167 >500 2.3073276957149767E-5 0.01586749595430011 >1k 2.307327470836942E-5 0.021150137428910518 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.736207695515242E-5 0.0 1.2893679492525406E-5 0.0 3 0.0 7.736207695515242E-5 0.0 2.578735898505081E-5 0.0 4 0.0 1.5472415391030485E-4 0.0 2.578735898505081E-5 1.2893679492525406E-5 5 0.0 1.6761783340283026E-4 0.0 2.578735898505081E-5 1.2893679492525406E-5 6 0.0 1.6761783340283026E-4 0.0 2.578735898505081E-5 2.578735898505081E-5 7 0.0 1.8051151289535567E-4 0.0 2.578735898505081E-5 2.578735898505081E-5 8 0.0 2.3208623086545729E-4 0.0 2.578735898505081E-5 2.578735898505081E-5 9 0.0 3.094483078206097E-4 0.0 3.868103847757621E-5 3.868103847757621E-5 10-11 1.2893679492525406E-5 3.094483078206097E-4 0.0 5.1574717970101616E-5 3.868103847757621E-5 12-13 1.2893679492525406E-5 3.094483078206097E-4 0.0 7.736207695515242E-5 3.868103847757621E-5 14-15 1.2893679492525406E-5 4.6417246173091457E-4 0.0 9.025575644767783E-5 5.802155771636432E-5 16-17 1.2893679492525406E-5 4.7706614122344E-4 0.0 1.3538363467151677E-4 8.380891670141513E-5 18-19 1.2893679492525406E-5 5.028535002084909E-4 0.0 1.5472415391030485E-4 9.025575644767783E-5 20-21 1.2893679492525406E-5 5.41534538686067E-4 0.0 1.6117099365656754E-4 9.670259619394054E-5 22-23 1.2893679492525406E-5 5.931092566561686E-4 0.0 1.9340519238788108E-4 1.0314943594020325E-4 24-25 1.2893679492525406E-5 6.769181733575838E-4 0.0 2.449799103579827E-4 1.0314943594020325E-4 26-27 1.2893679492525406E-5 7.091523720888972E-4 0.0 3.2234198731313513E-4 1.0314943594020325E-4 28-29 1.2893679492525406E-5 7.091523720888972E-4 0.0 7.994081285365751E-4 1.0314943594020325E-4 30-31 2.578735898505081E-5 7.929612887903124E-4 0.0 0.0024111180651022507 1.0314943594020325E-4 32-33 2.578735898505081E-5 7.994081285365751E-4 0.0 0.005499154303562085 1.0314943594020325E-4 34-35 2.578735898505081E-5 9.283449234618291E-4 0.0 0.009934580048990824 1.1604311543272864E-4 36-37 2.578735898505081E-5 0.0010379411991482952 0.0 0.01693584801343212 1.1604311543272864E-4 38-39 2.578735898505081E-5 0.001083069077372134 0.0 0.025793805824797074 1.2893679492525405E-4 40-41 2.578735898505081E-5 0.0012184527120436507 0.0 0.03470978519387839 1.4183047441777946E-4 42-43 2.578735898505081E-5 0.0012571337505212269 0.0 0.043296975735900314 1.4183047441777946E-4 44-45 2.578735898505081E-5 0.0013989642249390066 0.0 0.05363770668890568 1.4183047441777946E-4 46-47 2.578735898505081E-5 0.0015214541801179978 0.0 0.06416539599455268 1.4183047441777946E-4 48-49 2.578735898505081E-5 0.001534347859610523 0.0 0.07369382513952896 1.4183047441777946E-4 50-51 2.578735898505081E-5 0.0016503909750432517 0.0 0.08202958893144663 1.4183047441777946E-4 52-53 3.223419873131351E-5 0.0016632846545357773 0.0 0.09039114008234936 1.5472415391030488E-4 54-55 3.868103847757621E-5 0.0016826251737745654 0.0 0.09897833062437128 1.6761783340283026E-4 56-57 3.868103847757621E-5 0.0017277530519984043 0.0 0.10577974655667842 1.6761783340283026E-4 58-59 3.868103847757621E-5 0.0017535404109834552 0.0 0.11108549566785263 1.6761783340283026E-4 60-61 3.868103847757621E-5 0.0018244556481923449 0.0 0.11615271170841511 1.6761783340283026E-4 62-63 3.868103847757621E-5 0.0018953708854012345 0.0 0.12095560731938082 1.8051151289535567E-4 64-65 3.868103847757621E-5 0.0021274571162666917 0.0 0.1262484627510625 1.8051151289535567E-4 66-67 3.868103847757621E-5 0.002159691314998005 0.0 0.13143816874680397 1.8051151289535567E-4 68-69 5.157471797010162E-5 0.002249947071445683 0.0 0.1364151290309188 1.8695835264161836E-4 70-71 5.157471797010162E-5 0.002301521789415785 0.0 0.1410633004879742 2.062988718804065E-4 72-73 5.157471797010162E-5 0.002320862308654573 0.0 0.14476378650232896 2.062988718804065E-4 74-75 5.157471797010162E-5 0.0023659901868784117 0.0 0.14817416472810196 2.1919255137293187E-4 76-77 5.157471797010162E-5 0.0025078206612961914 0.0 0.151242860447323 2.1919255137293187E-4 78-79 5.157471797010162E-5 0.002578735898505081 0.0 0.15356372275597757 2.1919255137293187E-4 80-81 5.157471797010162E-5 0.002578735898505081 0.0 0.15471126023081233 2.2563939111919457E-4 82-83 5.157471797010162E-5 0.002585182738251344 0.0 0.15510451745533435 2.3208623086545729E-4 84-85 5.157471797010162E-5 0.002610970097236395 0.0 0.1553559442054386 2.3208623086545729E-4 86-87 5.157471797010162E-5 0.002681885334445284 0.0 0.15539462524391617 2.3208623086545729E-4 88-89 5.157471797010162E-5 0.0027592474114004365 0.0 0.15548488100036387 2.3208623086545729E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11145 0.0 51.627728 1 GTATCAA 20525 0.0 38.561867 1 ATCAACG 25450 0.0 30.65597 3 TCAACGC 25620 0.0 30.369396 4 CAACGCA 26225 0.0 29.668785 5 TATCAAC 26480 0.0 29.632282 2 AACGCAG 27100 0.0 28.82091 6 ACGCAGA 30780 0.0 25.264385 7 CGCAGAG 31185 0.0 24.936277 8 CTTATAC 6065 0.0 23.823097 1 GCAGAGT 35815 0.0 21.582731 9 GAGTACT 21475 0.0 20.328722 12-13 GTGGTAT 5085 0.0 20.03255 1 TATACAC 9155 0.0 19.827398 3 GTACATG 23805 0.0 19.480047 1 AGAGTAC 32815 0.0 19.27049 10-11 TACATGG 23605 0.0 19.049244 2 CAGAGTA 35095 0.0 19.020262 10-11 GTACTTT 23970 0.0 18.213852 14-15 TGGTATC 5435 0.0 18.03672 2 >>END_MODULE