##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138845_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10265249 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.90523210883633 34.0 31.0 34.0 31.0 34.0 2 33.0230238935266 34.0 31.0 34.0 31.0 34.0 3 33.08319807926724 34.0 33.0 34.0 31.0 34.0 4 36.45822804687933 37.0 37.0 37.0 35.0 37.0 5 36.417609743319424 37.0 37.0 37.0 35.0 37.0 6 36.44871761025963 37.0 37.0 37.0 35.0 37.0 7 36.40491331481584 37.0 37.0 37.0 35.0 37.0 8 36.38895169518051 37.0 37.0 37.0 35.0 37.0 9 38.17133115816284 39.0 39.0 39.0 37.0 39.0 10-11 38.12460175101451 39.0 39.0 39.0 37.0 39.0 12-13 38.09168082527759 39.0 38.0 39.0 37.0 39.0 14-15 39.53914181721262 41.0 40.0 41.0 37.0 41.0 16-17 39.514311830136805 41.0 39.0 41.0 37.0 41.0 18-19 39.52326363442329 41.0 39.5 41.0 37.0 41.0 20-21 39.49988143154761 41.0 39.0 41.0 37.0 41.0 22-23 39.4209339842604 41.0 39.0 41.0 36.0 41.0 24-25 39.262371924327695 40.5 39.0 41.0 36.0 41.0 26-27 39.26084161470888 40.5 39.0 41.0 36.0 41.0 28-29 39.18573372587021 41.0 39.0 41.0 36.0 41.0 30-31 39.094476276983585 40.5 39.0 41.0 35.5 41.0 32-33 38.89664827506031 40.0 38.5 41.0 35.0 41.0 34-35 38.812499426646056 40.0 38.0 41.0 35.0 41.0 36-37 39.006007052993795 40.0 39.0 41.0 35.0 41.0 38-39 39.071346488763595 41.0 39.0 41.0 35.0 41.0 40-41 39.05084404933771 41.0 39.0 41.0 35.0 41.0 42-43 38.90750781326547 40.0 39.0 41.0 35.0 41.0 44-45 38.923792733475025 40.0 38.0 41.0 35.0 41.0 46-47 38.87281034938417 40.0 38.0 41.0 35.0 41.0 48-49 38.80064088638957 40.0 38.0 41.0 35.0 41.0 50-51 38.71674336849748 40.0 38.0 41.0 35.0 41.0 52-53 38.59485086306569 40.0 38.0 41.0 35.0 41.0 54-55 38.44574833208593 40.0 38.0 41.0 34.0 41.0 56-57 38.29105101669168 40.0 37.0 41.0 34.0 41.0 58-59 38.12429017046033 40.0 37.0 41.0 34.0 41.0 60-61 37.930776512394125 39.5 36.0 41.0 34.0 41.0 62-63 37.6956481195715 39.0 36.0 41.0 33.5 41.0 64-65 37.4194132725811 39.0 35.0 40.5 33.0 41.0 66-67 37.0962939752643 38.0 35.0 40.0 33.0 41.0 68-69 36.76309837013666 37.5 35.0 40.0 32.5 41.0 70-71 36.409441581398696 37.0 35.0 39.5 32.0 41.0 72-73 36.0753138255473 36.5 35.0 39.0 32.0 41.0 74-75 35.738362014053436 36.0 35.0 39.0 32.0 40.0 76-77 34.883931396110924 35.0 34.0 37.0 30.5 39.0 78-79 35.12327398494759 35.0 34.0 37.0 31.0 39.0 80-81 34.918440960986736 35.0 34.0 37.0 31.0 39.0 82-83 34.66033783707233 35.0 34.0 36.5 31.0 38.5 84-85 34.409770521409506 35.0 34.0 36.0 31.0 37.0 86-87 34.202118259618246 35.0 34.0 36.0 31.0 37.0 88-89 34.01133780473074 35.0 34.0 35.0 31.0 36.5 90-91 33.818768725552005 35.0 34.0 35.0 31.0 36.0 92-93 33.69066450840913 35.0 34.0 35.0 30.0 36.0 94-95 33.619214199956474 35.0 34.0 35.0 30.0 36.0 96-97 33.5994900092331 35.0 34.0 35.0 30.5 35.5 98-99 33.62777755464158 35.0 34.0 35.0 31.0 35.0 100-101 32.21684742746996 33.5 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 7.0 20 30.0 21 199.0 22 860.0 23 3069.0 24 7901.0 25 16042.0 26 28714.0 27 45460.0 28 66484.0 29 91119.0 30 118481.0 31 151767.0 32 194798.0 33 259700.0 34 380157.0 35 577637.0 36 1052855.0 37 2329501.0 38 3258624.0 39 1592696.0 40 89143.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.94392625059558 21.21153612542667 15.598481829325328 24.246055794652424 2 13.568295915494701 21.44083908934297 41.505400464404566 23.485464530757763 3 16.828778337476276 26.523428705918384 31.31307384750238 25.334719109102956 4 11.87495792844382 18.76754280388133 38.900391018279244 30.45710824939561 5 13.061543855390163 37.90147710981 35.53969319205019 13.497285842749651 6 29.554188115651165 38.29676221200285 18.68418389071712 13.464865781628873 7 26.10002976061458 33.10585378137589 22.874680536119694 17.919435921889836 8 24.612147835202613 36.462326502186464 20.997737303762708 17.92778835884821 9 25.337765137437717 16.94952701823979 21.260502114182923 36.45220573013957 10-11 24.089727389954206 26.960826766111566 28.682441117599776 20.267004726334452 12-13 24.98795694093733 24.475382915699363 28.886634897994195 21.650025245369108 14-15 22.1447986846225 25.879266106954503 26.709306872512308 25.26662833591069 16-17 21.575853433196524 29.090574953698127 27.24157360506969 22.09199800803566 18-19 21.573453461621188 28.034174137828916 29.22761827088834 21.164754129661553 20-21 22.494938117611024 27.045800293737255 29.173096309424025 21.286165279227696 22-23 22.188986366982785 27.059594756067934 29.014677540188828 21.736741336760453 24-25 21.96802145292213 27.311426605386803 29.05836949430957 21.662182447381497 26-27 21.906888759265218 27.442777611442203 29.001043478125226 21.64929015116735 28-29 21.662162642755085 27.425159197266076 29.101489666590368 21.81118849338847 30-31 22.102707176013723 27.20725826067696 29.04079972932696 21.649234833982355 32-33 21.873635455097947 27.521328065342377 28.826236051611886 21.778800427947782 34-35 21.86911848579057 27.56840437908366 29.00538276377081 21.557094371354953 36-37 21.98074209660078 27.43691150882653 28.821222083976846 21.761124310595847 38-39 21.825667867175884 27.459623097878637 28.917179728404175 21.797529306541303 40-41 22.057317410805844 27.383067433171508 28.786539830698754 21.77307532532389 42-43 22.104544542724376 27.456823447254227 28.55629858406456 21.88233342595684 44-45 22.107083997426884 27.636399114388993 28.293193879422336 21.963323008761783 46-47 22.209609038486526 27.579289189779328 27.93168502102075 22.279416750713395 48-49 22.12879213675824 27.730571064106226 27.943323612345587 22.19731318678995 50-51 22.08244331641814 27.849394190603867 27.846763457874612 22.221399035103385 52-53 22.25250892049274 27.776257740907763 27.788018898913684 22.183214439685813 54-55 22.243233607958803 27.726556517940555 27.69616467253367 22.33404520156698 56-57 22.329156172543588 27.893953385888672 27.555591026317792 22.221299415249952 58-59 22.16187276408466 28.070919803024974 27.716680035688857 22.050527397201513 60-61 22.344228596395272 28.043981559713423 27.548561755520474 22.06322808837084 62-63 22.250583603951515 28.134568831023238 27.474032541359378 22.14081502366587 64-65 22.20866444360411 28.122553542576235 27.499610161916877 22.16917185190278 66-67 22.31393423096263 28.013874516265684 27.402469559029374 22.26972169374231 68-69 22.29426198597264 27.906895071034988 27.51170583046908 22.287137112523293 70-71 22.260785175332202 27.70623287960644 27.57382931653684 22.459152628524517 72-73 22.345219435176702 27.692842027125415 27.579872337333907 22.382066200363976 74-75 22.177205102488834 27.811380075615844 27.552438388224843 22.458976433670482 76-77 22.318339775184246 27.78194258496493 27.449358295939817 22.450359343911007 78-79 22.340152394351893 27.77088815511044 27.446612837089273 22.442346613448397 80-81 22.33148382689399 27.7211236612674 27.48587157288254 22.461520938956074 82-83 22.3264346583485 27.687327807904655 27.598848381306546 22.387389152440303 84-85 22.477844501628617 27.62429877301953 27.530262203714166 22.367594521637688 86-87 22.29584527989073 27.594566070324188 27.628017350529877 22.4815712992552 88-89 22.347745069565548 27.605955214521398 27.570759864202383 22.47553985171067 90-91 22.445330724583854 27.591854258487835 27.589127736667745 22.373687280260558 92-93 22.427614829597378 27.51653154054733 27.60656111978374 22.449292510071555 94-95 22.264766768309038 27.56317118515645 27.69122713030447 22.48083491623004 96-97 22.26789890420699 27.59252505013712 27.718956632217385 22.420619413438512 98-99 22.469858372051085 28.104773372253693 27.722043149364755 21.703325106330464 100-101 20.30949125827599 31.867025687948953 25.807649152282213 22.015833901492844 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2140.0 1 1963.5 2 2885.5 3 4142.0 4 5477.5 5 8116.5 6 10206.5 7 12443.5 8 14505.0 9 14826.0 10 13452.5 11 12194.5 12 13729.0 13 19158.5 14 32175.0 15 49762.5 16 63605.5 17 70443.5 18 70151.5 19 64950.5 20 57582.0 21 50218.5 22 45836.5 23 47155.0 24 54463.5 25 67558.5 26 85744.5 27 105581.5 28 126475.5 29 150250.0 30 173140.0 31 195038.0 32 219198.5 33 244112.0 34 267160.0 35 288055.5 36 311730.0 37 333376.5 38 348145.5 39 358249.5 40 369193.0 41 380527.5 42 386312.5 43 392216.5 44 401963.5 45 414214.0 46 424110.5 47 429547.0 48 425968.0 49 417101.0 50 409511.5 51 395421.5 52 375962.5 53 358313.5 54 341604.0 55 319938.0 56 294485.5 57 266331.0 58 234960.5 59 203214.5 60 170275.5 61 137688.5 62 107835.0 63 82533.0 64 62172.5 65 46797.5 66 35635.0 67 27126.5 68 20728.5 69 15000.5 70 10471.5 71 7525.0 72 5381.5 73 3688.5 74 2465.5 75 1629.0 76 1041.5 77 662.0 78 421.5 79 268.5 80 172.0 81 107.0 82 72.0 83 50.5 84 32.0 85 25.5 86 25.0 87 20.0 88 12.0 89 6.0 90 2.5 91 1.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.029965176684949385 3 0.0 4 0.0 5 0.0 6 0.0 7 3.89664196163191E-5 8 6.03979504052946E-4 9 5.260466648203078E-4 10-11 0.0 12-13 0.0 14-15 0.0020554786347608323 16-17 4.870802452039887E-5 18-19 9.741604904079775E-6 20-21 2.3380464452926356E-4 22-23 0.0021190087949094685 24-25 8.087948941460448E-4 26-27 0.014626832746773458 28-29 0.3085242854854256 30-31 0.3088441407220485 32-33 0.3269849379416899 34-35 0.21226248379432763 36-37 0.06966495176763365 38-39 0.06158049845244088 40-41 0.024256191220903098 42-43 0.009321691888081098 44-45 0.012431864452300474 46-47 0.008911046146087507 48-49 0.006301930329736386 50-51 0.006732350843337415 52-53 0.0027124285834048485 54-55 0.00123949933088134 56-57 0.003291157775604822 58-59 0.0038711472032141032 60-61 0.0029415344611846955 62-63 0.00205563082266291 64-65 8.250473370909656E-4 66-67 0.007714381495437019 68-69 0.011370453816857161 70-71 0.011542065220937103 72-73 0.009973812027537094 74-75 0.010536979347347458 76-77 0.009599125612213488 78-79 0.0025215814159567198 80-81 0.00198335619735273 82-83 0.0016861512140408752 84-85 1.2126708092309958E-5 86-87 0.0027400242887522185 88-89 6.201823460133749E-6 90-91 0.008417584560290509 92-93 0.017839656454455854 94-95 0.0014866705121877248 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 163.0 20-21 576.0 22-23 1310.0 24-25 3621.0 26-27 5204.0 28-29 8349.0 30-31 19252.0 32-33 25543.0 34-35 36380.0 36-37 51791.0 38-39 62700.0 40-41 65937.0 42-43 79434.0 44-45 95169.0 46-47 93509.0 48-49 80493.0 50-51 70332.0 52-53 67956.0 54-55 73655.0 56-57 78696.0 58-59 78634.0 60-61 77789.0 62-63 77837.0 64-65 84871.0 66-67 90630.0 68-69 86188.0 70-71 81821.0 72-73 78175.0 74-75 79875.0 76-77 81292.0 78-79 85940.0 80-81 87922.0 82-83 86279.0 84-85 88355.0 86-87 92981.0 88-89 100544.0 90-91 108462.0 92-93 111468.0 94-95 126554.0 96-97 201752.0 98-99 901083.0 100-101 6536727.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.26454626856544 #Duplication Level Percentage of deduplicated Percentage of total 1 87.49251360739233 71.10039420201024 2 8.253623874498556 13.414539984650489 3 2.2468087156551455 5.477576724899209 4 0.9042218528157224 2.9392471438076497 5 0.4027479980713969 1.6364566661922568 6 0.22860807193604485 1.1146638743528554 7 0.14112274559519167 0.8027793122277211 8 0.08744273853071274 0.5684795576943341 9 0.05747229423821447 0.42034139228537876 >10 0.18180381661273584 2.2241230636415272 >50 0.0029727213998498947 0.16239879833539334 >100 5.730090513145002E-4 0.07878413071292338 >500 6.641571306287866E-5 0.037942608943348895 >1k 2.2138489857406632E-5 0.022272540246667347 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9483209808159547E-5 0.0 0.0 0.0 3 0.0 1.9483209808159547E-5 0.0 0.0 0.0 4 0.0 4.870802452039887E-5 0.0 0.0 0.0 5 0.0 4.870802452039887E-5 0.0 0.0 0.0 6 0.0 4.870802452039887E-5 0.0 0.0 9.741604904079774E-6 7 0.0 4.870802452039887E-5 0.0 0.0 9.741604904079774E-6 8 0.0 5.8449629424478645E-5 0.0 0.0 9.741604904079774E-6 9 0.0 1.5586567846527638E-4 0.0 0.0 9.741604904079774E-6 10-11 0.0 1.6073648091731625E-4 0.0 0.0 9.741604904079774E-6 12-13 0.0 1.7047808582139605E-4 0.0 0.0 9.741604904079774E-6 14-15 0.0 2.0457370298567525E-4 0.0 0.0 1.9483209808159547E-5 16-17 0.0 2.3379851769791458E-4 0.0 0.0 4.383722206835898E-5 18-19 0.0 2.7276493731423365E-4 0.0 4.870802452039887E-6 4.870802452039887E-5 20-21 0.0 3.409561716427921E-4 0.0 9.741604904079774E-6 5.357882697243876E-5 22-23 0.0 3.5556857899891176E-4 0.0 9.741604904079774E-6 6.819123432855841E-5 24-25 0.0 4.188890108754303E-4 0.0 4.870802452039887E-5 8.767444413671796E-5 26-27 0.0 4.481138255876696E-4 0.0 1.0715765394487751E-4 9.741604904079774E-5 28-29 0.0 4.578554304917494E-4 0.0 3.2634376428667246E-4 9.741604904079774E-5 30-31 0.0 5.16305059916228E-4 0.0 0.0011105429590650942 1.0228685149283763E-4 32-33 0.0 5.16305059916228E-4 0.0 0.0026448457314576586 1.0715765394487751E-4 34-35 0.0 5.747546893407067E-4 0.0 0.005167921401614321 1.120284563969174E-4 36-37 0.0 6.429459236692651E-4 0.0 0.008791798425931996 1.1689925884895729E-4 38-39 0.0 7.208787629019032E-4 0.0 0.013954849025094276 1.3151166620507695E-4 40-41 0.0 8.231656143947409E-4 0.0 0.019546530240036067 1.3638246865711685E-4 42-43 0.0 8.377780217508606E-4 0.0 0.02491415454218402 1.3638246865711685E-4 44-45 0.0 9.546772805998178E-4 0.0 0.03132900137152055 1.3638246865711685E-4 46-47 0.0 0.001076447341900815 0.0 0.03857675542015591 1.4125327110915673E-4 48-49 0.0 0.0010959305517089747 0.0 0.045736835024654546 1.5586567846527638E-4 50-51 0.0 0.0011836049958456926 0.0 0.05222961469322371 1.5586567846527638E-4 52-53 0.0 0.001207959008105892 0.0 0.058605495102943925 1.802196907254758E-4 54-55 0.0 0.0012225714154620116 0.0 0.06532720248675897 2.1431530788975503E-4 56-57 0.0 0.0012371838228181313 0.0 0.0715082507983976 2.289277152458747E-4 58-59 0.0 0.001256667032626291 0.0 0.07697329114958634 2.3379851769791458E-4 60-61 0.0 0.0012712794399824105 0.0 0.08230681983457003 2.3379851769791458E-4 62-63 0.0 0.00129563345224261 0.0 0.08769879814897817 2.4354012260199436E-4 64-65 0.0 0.0013735662914752481 0.0 0.09298361880944145 2.4354012260199436E-4 66-67 0.0 0.0013979203037354476 0.0 0.09898444743035459 2.4354012260199436E-4 68-69 0.0 0.0014320159208997267 0.0 0.10462483666981678 2.4841092505403426E-4 70-71 0.0 0.0014417575258038066 0.0 0.10997297776215657 2.5328172750607416E-4 72-73 0.0 0.0014466283282558465 0.0 0.11399138978508948 2.922481471223932E-4 74-75 0.0 0.0015099487601323651 0.0 0.11736685588435312 2.922481471223932E-4 76-77 0.0 0.001544044377296644 0.0 0.12045981544139844 2.922481471223932E-4 78-79 0.0 0.0015586567846527638 0.0 0.12334333049300605 2.922481471223932E-4 80-81 0.0 0.0015586567846527638 0.0 0.12451232308149564 3.1173135693055276E-4 82-83 0.0 0.001563527587104804 0.0 0.12496530770953534 3.409561716427921E-4 84-85 0.0 0.0016024940067211229 0.0 0.1253160054860822 3.4582697409483196E-4 86-87 0.0 0.0016317188214333622 0.0 0.12542803394247914 3.5069777654687186E-4 88-89 0.0 0.0016658144385976413 0.0 0.12545238795473934 3.6531018390299156E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14380 0.0 50.428146 1 GTATCAA 26355 0.0 37.055645 1 ATCAACG 33140 0.0 28.96778 3 TCAACGC 33255 0.0 28.854708 4 TATCAAC 34005 0.0 28.391552 2 CAACGCA 33890 0.0 28.314053 5 AACGCAG 34585 0.0 27.807083 6 CTTATAC 7475 0.0 25.601702 1 ACGCAGA 40070 0.0 23.95788 7 CGCAGAG 40615 0.0 23.657518 8 TATACAC 10965 0.0 21.633368 3 GCAGAGT 47060 0.0 20.354147 9 GTACATG 32505 0.0 20.315786 1 TACATGG 32815 0.0 19.901766 2 GAGTACT 27185 0.0 19.59775 12-13 GTGGTAT 7270 0.0 19.595161 1 AGAGTAC 42520 0.0 19.072052 10-11 ACATGGG 33225 0.0 19.06879 3 TGGTATC 7320 0.0 18.523598 2 CAGAGTA 45540 0.0 18.25941 10-11 >>END_MODULE