Basic Statistics
Measure | Value |
---|---|
Filename | SRR2138844_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10927282 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14855 | 0.0 | 52.620968 | 1 |
GTATCAA | 27155 | 0.0 | 38.254696 | 1 |
TCAACGC | 33875 | 0.0 | 30.123945 | 4 |
ATCAACG | 34205 | 0.0 | 29.85845 | 3 |
TATCAAC | 35070 | 0.0 | 29.363468 | 2 |
CAACGCA | 35130 | 0.0 | 29.121197 | 5 |
AACGCAG | 36250 | 0.0 | 28.221453 | 6 |
ACGCAGA | 41820 | 0.0 | 24.47292 | 7 |
CGCAGAG | 43250 | 0.0 | 23.653818 | 8 |
GTGGTAT | 7060 | 0.0 | 21.559374 | 1 |
GCAGAGT | 49275 | 0.0 | 20.65805 | 9 |
GTACATG | 35560 | 0.0 | 20.639986 | 1 |
TGGTATC | 7195 | 0.0 | 20.019426 | 2 |
TACATGG | 35900 | 0.0 | 19.893574 | 2 |
GAGTACT | 27690 | 0.0 | 19.87089 | 12-13 |
ACATGGG | 36215 | 0.0 | 19.085695 | 3 |
AGAGTAC | 44535 | 0.0 | 18.826725 | 10-11 |
CAGAGTA | 48205 | 0.0 | 18.499144 | 10-11 |
GTACTTT | 29835 | 0.0 | 18.363272 | 14-15 |
AGTACTT | 30195 | 0.0 | 17.353975 | 12-13 |