##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138842_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8761774 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.988370505790265 33.0 31.0 34.0 30.0 34.0 2 32.208225183621494 34.0 31.0 34.0 30.0 34.0 3 32.30865826943265 34.0 31.0 34.0 30.0 34.0 4 35.693262232054835 37.0 35.0 37.0 35.0 37.0 5 35.80422012711124 37.0 35.0 37.0 35.0 37.0 6 35.84111368314225 37.0 36.0 37.0 35.0 37.0 7 35.769362231895045 37.0 36.0 37.0 35.0 37.0 8 35.71136838270424 37.0 36.0 37.0 35.0 37.0 9 37.4407492135725 39.0 38.0 39.0 35.0 39.0 10-11 37.43855045793238 39.0 38.0 39.0 35.0 39.0 12-13 37.36972529763949 39.0 38.0 39.0 35.0 39.0 14-15 38.783727872917055 41.0 39.0 41.0 35.0 41.0 16-17 38.79674093397068 41.0 39.0 41.0 35.0 41.0 18-19 38.81347441739538 41.0 38.5 41.0 34.0 41.0 20-21 38.854115260280985 41.0 39.0 41.0 34.0 41.0 22-23 38.816524377334204 40.0 39.0 41.0 34.0 41.0 24-25 38.78046508758921 40.0 38.0 41.0 34.0 41.0 26-27 38.73453537840439 40.0 38.0 41.0 34.0 41.0 28-29 38.65809713922606 40.0 38.0 41.0 34.0 41.0 30-31 38.534254911615676 40.0 38.0 41.0 34.0 41.0 32-33 38.47736049607347 40.0 38.0 41.0 34.0 41.0 34-35 38.318581760140006 40.0 38.0 41.0 33.0 41.0 36-37 38.20488101618156 40.0 38.0 41.0 33.0 41.0 38-39 38.1924073431283 40.0 38.0 41.0 33.0 41.0 40-41 38.10625629875889 40.0 38.0 41.0 33.0 41.0 42-43 37.92967265122266 40.0 37.5 41.0 33.0 41.0 44-45 37.99446190176603 40.0 37.5 41.0 32.5 41.0 46-47 38.21070420863352 40.0 38.0 41.0 33.0 41.0 48-49 38.210624885473855 40.0 38.0 41.0 33.0 41.0 50-51 38.126189158662015 40.0 38.0 41.0 33.0 41.0 52-53 38.05923929673337 40.0 37.0 41.0 33.0 41.0 54-55 37.98231263608739 40.0 37.0 41.0 33.0 41.0 56-57 38.037698680769 40.0 37.0 41.0 33.0 41.0 58-59 37.85341940340102 40.0 37.0 41.0 33.0 41.0 60-61 37.77662350942016 40.0 36.0 41.0 33.0 41.0 62-63 37.55022205187457 39.0 36.0 41.0 32.0 41.0 64-65 37.34002619927273 39.0 35.0 41.0 32.0 41.0 66-67 37.05419496866597 39.0 35.0 41.0 31.5 41.0 68-69 36.80660401898611 38.0 35.0 40.0 31.0 41.0 70-71 36.49207654294045 37.0 35.0 40.0 31.0 41.0 72-73 36.12929229941389 37.0 35.0 39.5 31.0 41.0 74-75 35.762958129316985 36.0 34.5 39.0 31.0 41.0 76-77 35.383295409291065 36.0 34.0 39.0 30.0 40.5 78-79 34.98994915427318 35.0 34.0 37.5 30.0 39.5 80-81 34.634928516607346 35.0 34.0 37.0 30.0 39.0 82-83 34.30302585163969 35.0 34.0 36.5 30.0 39.0 84-85 34.06465732632908 35.0 34.0 36.0 29.5 37.0 86-87 33.82392616967261 35.0 34.0 36.0 29.0 37.0 88-89 33.56810397868822 35.0 33.0 35.0 29.0 37.0 90-91 33.36706557803754 35.0 33.0 35.0 29.0 36.0 92-93 33.26279850358755 35.0 33.0 35.0 29.0 36.0 94-95 33.24163752344394 35.0 33.0 35.0 29.0 36.0 96-97 33.214070287271824 35.0 33.0 35.0 29.0 36.0 98-99 33.31798201617059 35.0 33.0 35.0 29.0 35.0 100 32.69496736799528 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 3.0 16 41.0 17 244.0 18 1131.0 19 3280.0 20 7731.0 21 14647.0 22 23587.0 23 32954.0 24 43692.0 25 56232.0 26 66941.0 27 73973.0 28 85911.0 29 106038.0 30 125897.0 31 153194.0 32 200721.0 33 274739.0 34 392856.0 35 588242.0 36 964245.0 37 1705493.0 38 2406279.0 39 1342024.0 40 91677.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.75409842801241 20.781419379226172 14.742585234451381 23.72189695831004 2 14.092956672427848 21.312567210592047 41.87043510225143 22.72404101472868 3 17.467673394125534 26.522924121153846 30.81141233260542 25.197990152115203 4 12.177406652407052 18.6231101635138 39.705376118265015 29.494107065814134 5 13.1805008127572 38.354617820345105 35.76406767372235 12.70081369317534 6 29.22206696226681 38.5787519915114 19.39663054190341 12.802550504318374 7 26.118271768193992 33.24247023894106 23.50915073880336 17.13010725406159 8 24.152774334467 36.78625874734104 21.746231115628127 17.31473580256383 9 25.0904802630385 17.801381826424677 21.62544772164597 35.48269018889086 10-11 23.516971871066385 27.419465569721634 29.531354122991544 19.53220843622044 12-13 24.256872942939637 24.924480523594095 29.331542058341615 21.487104475124656 14-15 21.67293720742914 26.56292605502424 26.678987081769122 25.0851496557775 16-17 21.53970553633532 29.523596795486412 27.391810343819056 21.544887324359216 18-19 21.643384517593915 29.13797333475474 28.41757421839532 20.80106792925602 20-21 22.592447298070308 28.235571931988535 28.08122309322175 21.090757676719402 22-23 22.302286431021027 28.091025090649275 27.90946373497744 21.697224743352265 24-25 22.007556520830857 28.26386569889871 27.940918108076417 21.787659672194017 26-27 21.980455189465033 28.452454706927988 27.825173715053403 21.74191638855357 28-29 21.90556696535446 28.509811647328693 27.858056283932342 21.7265651033845 30-31 22.22650183171302 28.241670810028534 27.807789543261833 21.724037814996613 32-33 21.97847873565804 28.321919061664186 27.82390391131647 21.8756982913613 34-35 22.141562950513833 28.29722162008213 27.8307737806548 21.730441648749242 36-37 22.103924215084017 28.0829037540773 27.925375177291752 21.887796853546934 38-39 21.845750441837602 28.074299644950536 28.153309447384373 21.926640465827493 40-41 22.01001713327169 27.862413507219664 28.195536271055477 21.932033088453178 42-43 21.844457301815705 27.868662359686375 28.152102844134134 22.134777494363785 44-45 21.822429824903665 27.835443104318795 28.237133328169794 22.104993742607746 46-47 21.74295506673595 27.718153682505193 28.25028007112436 22.2886111796345 48-49 21.485076103878097 27.68222172737439 28.48450009866783 22.34820207007968 50-51 21.337939246236996 27.69709482289252 28.561089514964316 22.40387641590617 52-53 21.31470879865531 27.61174653450547 28.628158445131557 22.445386221707658 54-55 21.29735858929228 27.55433842132463 28.648849995864456 22.499452993518634 56-57 21.26074941642416 27.632489282015477 28.47855968336384 22.628201618196524 58-59 21.218755872237303 27.678141868015437 28.42123717626961 22.68186508347765 60-61 21.21154041273334 27.41389528930946 28.512480815196657 22.862083482760546 62-63 21.24281231077935 27.406668081818292 28.41349548930758 22.93702411809478 64-65 21.386759801283876 27.50096282842478 28.239836558126598 22.872440812164747 66-67 21.251940978619928 27.64316051134229 27.943305089076116 23.16159342096167 68-69 21.326815222492037 27.74785906179904 27.738139604812957 23.187186110895965 70-71 21.47343126411504 27.683615611091213 27.558935132445384 23.28401799234837 72-73 21.66910892566129 27.629619167697495 27.11259953699883 23.58867236964238 74-75 21.73277895547006 27.611436191816747 26.888386448666573 23.76739840404662 76-77 22.01100901037757 27.32603210820702 27.035181127961934 23.627777753453476 78-79 22.183963904902015 27.064275472220338 27.18742623514728 23.56433438773036 80-81 22.28788782198566 26.96536600426243 27.20726501764208 23.53948115610983 82-83 22.26308705194628 27.079209842558466 27.09286275077316 23.564840354722097 84-85 22.353530275992693 26.8731471915935 27.289626844571096 23.483695687842708 86-87 22.086560742344194 27.06413268567577 27.58555291157505 23.26375366040499 88-89 22.25628381598692 27.24828140728618 27.32701511889838 23.168419657828522 90-91 22.211458404465724 27.501841842852315 27.62262375409634 22.664075998585623 92-93 21.890679909892054 27.455108334119625 27.94722071455592 22.7069910414324 94-95 21.78382238862539 27.44709920076889 28.19601677334495 22.57306163726077 96-97 21.96100330918301 27.35115463968174 28.46264710152362 22.225194949611637 98-99 23.36974737668988 29.341396908633577 28.62145305990909 18.667402654767454 100 22.8822874529263 30.517245574569785 22.265987425384726 24.33447954711919 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3029.0 1 2329.5 2 1803.5 3 1928.5 4 1888.0 5 2108.5 6 2606.0 7 3115.0 8 3500.5 9 3900.5 10 4310.5 11 4586.5 12 4905.5 13 5437.0 14 6182.5 15 7197.0 16 8440.0 17 10007.5 18 11903.0 19 14059.5 20 16648.5 21 20090.5 22 25135.5 23 31794.0 24 40541.5 25 52250.5 26 67187.5 27 84460.0 28 102399.5 29 122625.5 30 142655.0 31 162727.5 32 184075.5 33 203961.5 34 224233.0 35 242471.0 36 262519.0 37 283462.5 38 299017.0 39 311827.5 40 326385.0 41 339102.0 42 348192.0 43 357794.0 44 363512.0 45 368624.0 46 373158.0 47 372469.5 48 368227.0 49 360070.5 50 349572.0 51 336033.5 52 318091.0 53 296552.0 54 274117.0 55 250150.0 56 223877.0 57 196784.5 58 171505.5 59 148799.0 60 124596.0 61 101272.5 62 80835.5 63 63031.5 64 48192.5 65 36632.5 66 28265.0 67 22456.5 68 18059.5 69 14248.0 70 11316.0 71 8946.5 72 7067.5 73 5525.0 74 4333.0 75 3505.0 76 2738.0 77 2134.5 78 1664.0 79 1248.0 80 946.0 81 722.5 82 574.5 83 418.5 84 308.5 85 249.0 86 208.0 87 170.0 88 119.0 89 76.0 90 51.5 91 42.0 92 37.0 93 24.0 94 12.0 95 8.5 96 7.5 97 8.5 98 9.0 99 13.0 100 31.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02275794833329415 3 0.0126800805407672 4 0.004953334792702939 5 0.009758297805900951 6 0.009587099598779882 7 0.0027505845277451804 8 0.009427314605466884 9 0.005375623703601577 10-11 0.004000331439728986 12-13 0.009005025694568247 14-15 0.00496474800651101 16-17 0.0036465218116787765 18-19 0.005929164573293034 20-21 0.004578756408617585 22-23 0.010225670843996022 24-25 0.00974099082683348 26-27 0.023411756615222976 28-29 0.02001748250746947 30-31 0.015899720257843905 32-33 0.012926325288735326 34-35 0.008944002257986463 36-37 0.010508491605232075 38-39 0.005067663430554759 40-41 0.005960911050089645 42-43 0.003931107229498098 44-45 0.006941176210259874 46-47 0.009971345501873563 48-49 0.00771996453488002 50-51 0.010041428935690409 52-53 8.961231603557925E-4 54-55 0.0026455055939538404 56-57 5.581334466520483E-4 58-59 0.0028718516811013506 60-61 9.727535847738241E-4 62-63 0.006947269808624575 64-65 0.003689887785156165 66-67 0.003727020962088382 68-69 0.005047788157633859 70-71 7.612892285739598E-4 72-73 5.708983097314457E-4 74-75 0.0 76-77 1.9036407510091198E-5 78-79 3.7263760607322204E-4 80-81 1.562568565834204E-4 82-83 0.0 84-85 9.442679020637477E-4 86-87 0.003309500616105079 88-89 0.021245054525158465 90-91 0.002749787633688984 92-93 0.0012046757867596898 94-95 0.001099535811401714 96-97 4.486956114375097E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2671.0 20-21 5135.0 22-23 5784.0 24-25 7047.0 26-27 8693.0 28-29 11329.0 30-31 14533.0 32-33 14708.0 34-35 17762.0 36-37 24173.0 38-39 28308.0 40-41 20697.0 42-43 11504.0 44-45 11810.0 46-47 12211.0 48-49 12634.0 50-51 12695.0 52-53 12947.0 54-55 13176.0 56-57 13948.0 58-59 14910.0 60-61 16008.0 62-63 47784.0 64-65 82118.0 66-67 86277.0 68-69 86783.0 70-71 87419.0 72-73 85592.0 74-75 89859.0 76-77 95948.0 78-79 101261.0 80-81 106124.0 82-83 106195.0 84-85 113599.0 86-87 138796.0 88-89 133436.0 90-91 139980.0 92-93 151373.0 94-95 179031.0 96-97 350834.0 98-99 615256.0 100-101 5671426.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.24983108454036 #Duplication Level Percentage of deduplicated Percentage of total 1 88.85085985884504 74.85669934823862 2 7.657682492339858 12.903169129573499 3 2.021758100534603 5.109983353915245 4 0.6969506725750446 2.3487190575481725 5 0.31532005542832703 1.3282830703702226 6 0.16426680461137838 0.8303670324783494 7 0.09871701101299482 0.5821824052110868 8 0.05516461028281601 0.37180872785373975 9 0.039065308535258546 0.2962121080824887 >10 0.09874838380948864 1.2007432107715756 >50 0.0010475127100550627 0.060124896623902954 >100 3.565751728901589E-4 0.05957156974304858 >500 2.087268894793107E-5 0.009126721489163962 >1k 4.1741453392500775E-5 0.04300936810088922 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1413213808071288E-5 2 0.0 1.1413213808071288E-5 0.0 1.1413213808071288E-5 1.1413213808071288E-5 3 0.0 1.1413213808071288E-5 0.0 2.2826427616142577E-5 1.1413213808071288E-5 4 0.0 4.5652855232285153E-5 0.0 3.423964142421386E-5 1.1413213808071288E-5 5 0.0 4.5652855232285153E-5 0.0 4.5652855232285153E-5 1.1413213808071288E-5 6 2.2826427616142577E-5 4.5652855232285153E-5 0.0 5.706606904035644E-5 3.423964142421386E-5 7 2.2826427616142577E-5 4.5652855232285153E-5 0.0 5.706606904035644E-5 3.423964142421386E-5 8 2.2826427616142577E-5 7.989249665649901E-5 0.0 9.130571046457031E-5 3.423964142421386E-5 9 2.2826427616142577E-5 1.7119820712106933E-4 0.0 1.3695856569685545E-4 5.706606904035644E-5 10-11 3.423964142421386E-5 1.7119820712106933E-4 0.0 1.6549160021703366E-4 5.706606904035644E-5 12-13 3.423964142421386E-5 1.7119820712106933E-4 0.0 1.8261142092914061E-4 6.847928284842772E-5 14-15 3.423964142421386E-5 2.2826427616142575E-4 0.0 1.9973124164124754E-4 1.0271892427264159E-4 16-17 9.130571046457031E-5 2.2826427616142575E-4 0.0 2.682105244896753E-4 1.1413213808071288E-4 18-19 9.130571046457031E-5 2.3967748996949704E-4 0.0 2.9674355900985346E-4 1.2554535188878416E-4 20-21 1.0271892427264159E-4 2.625039175856396E-4 0.0 3.252765935300317E-4 1.312519587928198E-4 22-23 1.0842553117667723E-4 3.5380962805020994E-4 0.0 6.790862215802416E-4 1.6549160021703366E-4 24-25 1.1413213808071288E-4 3.8234266257038813E-4 0.0 0.0017405151057308713 1.8261142092914061E-4 26-27 1.1413213808071288E-4 3.880492694744238E-4 0.0 0.003988918225920915 2.0543784854528318E-4 28-29 1.1413213808071288E-4 3.880492694744238E-4 0.0 0.018660604576196553 2.1685106235335447E-4 30-31 1.1413213808071288E-4 4.793549799389941E-4 0.0 0.0686676008762609 2.225576692573901E-4 32-33 1.1413213808071288E-4 4.793549799389941E-4 0.0 0.19915487434393994 2.3967748996949704E-4 34-35 1.1413213808071288E-4 5.307144420753149E-4 0.0 0.3865256054310463 2.3967748996949704E-4 36-37 1.1413213808071288E-4 5.934871180197069E-4 0.0 0.666976801729878 2.5679731068160394E-4 38-39 1.1413213808071288E-4 5.934871180197069E-4 0.0 1.0237481587632824 2.682105244896753E-4 40-41 1.1413213808071288E-4 6.619664008681347E-4 0.0 1.3779058898346386 2.853303452017822E-4 42-43 1.1413213808071288E-4 6.847928284842773E-4 0.0 1.8754078797284661 3.0815677281792475E-4 44-45 1.1413213808071288E-4 7.875117527569188E-4 0.0 2.505605599961834 3.4239641424213866E-4 46-47 1.1413213808071288E-4 8.559910356053465E-4 0.0 3.212226199854048 3.766360556663525E-4 48-49 1.1983874498474852E-4 8.616976425093822E-4 0.0 3.9020066027724525 3.994624832824951E-4 50-51 1.312519587928198E-4 9.644165667820238E-4 0.0 4.582861872492945 3.994624832824951E-4 52-53 1.3695856569685545E-4 9.701231736860595E-4 0.0 5.246369057225169 4.394087316107446E-4 54-55 1.3695856569685545E-4 9.701231736860595E-4 0.0 5.937998400780481 5.078880144591723E-4 56-57 1.3695856569685545E-4 9.92949601302202E-4 0.0 6.6813980821692045 5.478342627874218E-4 58-59 1.3695856569685545E-4 9.986562082062375E-4 0.0 7.437574856416064 5.535408696914575E-4 60-61 1.5407838640896237E-4 0.0010214826358223802 0.0 8.182903370938352 5.763672973076E-4 62-63 1.940246347372119E-4 0.0010614288841506298 0.0 8.878356141119367 6.163135456358495E-4 64-65 1.940246347372119E-4 0.0011755610222313427 0.0 9.067530159988149 6.163135456358495E-4 66-67 1.940246347372119E-4 0.0011983874498474852 0.0 9.077037367090272 6.220201525398852E-4 68-69 1.940246347372119E-4 0.001215507270559592 0.0 9.084598621238118 6.448465801560277E-4 70-71 1.9973124164124754E-4 0.0012383336981757346 0.0 9.090824529370423 6.619664008681347E-4 72-73 2.1685106235335447E-4 0.0012497469119838061 0.0 9.097107503571765 7.190324699084911E-4 74-75 2.1685106235335447E-4 0.0012896931603120555 0.0 9.103065201179579 7.190324699084911E-4 76-77 2.1685106235335447E-4 0.0013752922638725902 0.0 9.107185371364292 7.190324699084911E-4 78-79 2.1685106235335447E-4 0.0014038252983927684 0.0 9.109587852870892 7.190324699084911E-4 80-81 2.1685106235335447E-4 0.0014152385122008396 0.0 9.110694934610274 7.36152290620598E-4 82-83 2.1685106235335447E-4 0.0014380649398169822 0.0 9.11169359081848 7.703919320448119E-4 84-85 2.1685106235335447E-4 0.001460891367433125 0.0 9.112018867412012 7.760985389488476E-4 86-87 2.1685106235335447E-4 0.001472304581241196 0.0 9.112184359012229 7.818051458528832E-4 88 2.1685106235335447E-4 0.0015978499331299803 0.0 9.112195772226036 7.875117527569188E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7360 0.0 38.938805 1 GTATCAA 11810 0.0 32.566494 1 TCAACGC 12770 0.0 28.909908 4 ATCAACG 12915 0.0 28.58745 3 CAACGCA 13125 0.0 28.027025 5 AACGCAG 13720 0.0 26.972042 6 TATCAAC 14455 0.0 26.0307 2 TCGGTGG 6760 0.0 25.075441 94 ACGCAGA 16245 0.0 22.620613 7 CGCAGAG 16560 0.0 22.163658 8 GTACATG 26595 0.0 20.015064 1 TACATGG 26185 0.0 19.42276 2 ACATGGG 27315 0.0 18.66583 3 GCAGAGT 21040 0.0 17.485985 9 CGGTGGT 2140 0.0 17.42626 94 CATGGGG 19430 0.0 16.829006 4 CTCGGTG 8715 0.0 16.727318 94 AGAGTAC 18045 0.0 16.368134 10-11 ACCGAAC 905 0.0 16.02805 8 TCTCGGT 9405 0.0 15.818393 92-93 >>END_MODULE