##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138841_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8573840 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.78376760004852 33.0 31.0 34.0 30.0 34.0 2 32.018903548468366 34.0 31.0 34.0 30.0 34.0 3 32.11307792074496 34.0 31.0 34.0 30.0 34.0 4 35.53677640357179 37.0 35.0 37.0 33.0 37.0 5 35.6561811277094 37.0 35.0 37.0 35.0 37.0 6 35.69122376904631 37.0 35.0 37.0 35.0 37.0 7 35.61906112080468 37.0 35.0 37.0 33.0 37.0 8 35.55132134492829 37.0 35.0 37.0 33.0 37.0 9 37.25020539221632 39.0 37.0 39.0 34.0 39.0 10-11 37.24817217256212 39.0 37.0 39.0 34.0 39.0 12-13 37.16896227361369 39.0 37.0 39.0 34.0 39.0 14-15 38.52762198734756 40.0 38.0 41.0 34.0 41.0 16-17 38.534142811155796 40.0 38.0 41.0 34.0 41.0 18-19 38.54685152743694 40.0 38.0 41.0 34.0 41.0 20-21 38.58665719302892 40.0 38.0 41.0 34.0 41.0 22-23 38.54501431273329 40.0 38.0 41.0 34.0 41.0 24-25 38.50772454325667 40.0 38.0 41.0 34.0 41.0 26-27 38.460409647339695 40.0 38.0 41.0 33.5 41.0 28-29 38.37918145099255 40.0 38.0 41.0 33.0 41.0 30-31 38.254656368168824 40.0 38.0 41.0 33.0 41.0 32-33 38.19370486195153 40.0 38.0 41.0 33.0 41.0 34-35 38.03713791711917 40.0 38.0 41.0 33.0 41.0 36-37 37.913160353502406 40.0 38.0 41.0 32.0 41.0 38-39 37.89837292357486 40.0 37.0 41.0 32.0 41.0 40-41 37.81012215552905 40.0 37.0 41.0 32.0 41.0 42-43 37.623625223384636 40.0 37.0 41.0 31.5 41.0 44-45 37.6783308052258 40.0 37.0 41.0 31.5 41.0 46-47 37.894346982175605 40.0 37.0 41.0 32.0 41.0 48-49 37.88278567234218 40.0 37.0 41.0 32.0 41.0 50-51 37.78606242455341 40.0 37.0 41.0 32.0 41.0 52-53 37.70275631413874 40.0 37.0 41.0 32.0 41.0 54-55 37.61248453862811 40.0 36.0 41.0 32.0 41.0 56-57 37.65986568939914 40.0 36.0 41.0 32.0 41.0 58-59 37.46104586404811 39.5 36.0 41.0 31.5 41.0 60-61 37.367473065356876 39.0 35.5 41.0 31.0 41.0 62-63 37.12638754466104 39.0 35.0 41.0 31.0 41.0 64-65 36.91151426083653 39.0 35.0 41.0 31.0 41.0 66-67 36.63388621157359 38.0 35.0 40.0 31.0 41.0 68-69 36.39529496503005 37.0 35.0 40.0 31.0 41.0 70-71 36.10198670900693 37.0 35.0 39.5 31.0 41.0 72-73 35.777621754533456 36.5 34.0 39.0 30.0 41.0 74-75 35.44553174750723 36.0 34.0 39.0 30.0 41.0 76-77 35.126186825075095 35.5 34.0 38.5 30.0 40.0 78-79 34.78308103819211 35.0 34.0 37.0 30.0 39.0 80-81 34.4860512154044 35.0 34.0 37.0 30.0 39.0 82-83 34.198524537399116 35.0 34.0 36.0 29.0 38.5 84-85 33.993093729634495 35.0 34.0 36.0 29.0 37.0 86-87 33.78608031060227 35.0 34.0 36.0 29.0 37.0 88-89 33.56584784773281 35.0 33.0 35.0 29.0 36.5 90-91 33.40879922361331 35.0 33.0 35.0 29.0 36.0 92-93 33.33028290280699 35.0 33.0 35.0 29.0 36.0 94-95 33.3224594969021 35.0 33.0 35.0 29.0 36.0 96-97 33.29453782148623 35.0 33.0 35.0 29.0 36.0 98-99 33.342827850349245 35.0 33.0 35.0 29.0 35.0 100 32.73695863085649 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 2.0 14 1.0 15 10.0 16 47.0 17 277.0 18 1297.0 19 4223.0 20 9623.0 21 17985.0 22 28544.0 23 39723.0 24 52166.0 25 65951.0 26 77607.0 27 83885.0 28 96222.0 29 115240.0 30 136059.0 31 165078.0 32 213354.0 33 284071.0 34 396622.0 35 581376.0 36 925291.0 37 1586960.0 38 2188180.0 39 1416262.0 40 87783.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.892913793586075 20.556425125731295 14.647054295391563 23.90360678529107 2 14.391143567059794 21.22282834087472 41.29974361962611 23.086284472439374 3 17.661357150722566 26.20454452135969 30.61602858534637 25.518069742571374 4 12.495984689448825 18.44661077463243 38.924228028115685 30.133176507803057 5 13.499083288366757 38.14696174073263 35.39248765372912 12.961467317171493 6 29.77627250234104 38.02373654921879 19.046803096379982 13.153187852060185 7 26.413766880267612 33.11643156566305 23.10229517986568 17.36750637420366 8 24.50035523736283 36.38227809387482 21.478184016803176 17.63918265195918 9 25.273680899181507 17.597038840030386 21.275825673300794 35.85345458748731 10-11 23.83209359475627 27.145664709612376 29.16371110120593 19.858530594425424 12-13 24.494837210159524 24.766612411551602 28.90052440908621 21.83802596920266 14-15 21.98554811757647 26.307506832749045 26.283724013858656 25.42322103581583 16-17 21.87270095172689 29.195970313478576 27.03444868417822 21.896880050616314 18-19 21.970486719116913 28.81898762502997 28.061574677334633 21.148950978518485 20-21 22.929549926475012 27.927621139135795 27.691516095702628 21.45131283868657 22-23 22.675033598261383 27.75100181623903 27.517072424969335 22.056892160530257 24-25 22.394645875618043 27.929142804644368 27.54794851431242 22.128262805425166 26-27 22.280143858786275 28.091465205213613 27.508373615092385 22.120017320907728 28-29 22.243835993637536 28.156460452813164 27.515292477231917 22.084411076317384 30-31 22.579634580027236 27.920474739259998 27.43636995149793 22.063520729214833 32-33 22.311753922674296 28.023223296707332 27.424064409109235 22.240958371509137 34-35 22.51530787940858 28.0272326167844 27.406442878703945 22.05101662510307 36-37 22.475220020720144 27.86349796556346 27.463870557132136 22.19741145658426 38-39 22.23469567330858 27.983566101782603 27.61172379587768 22.170014429031138 40-41 22.481861307597857 27.839791896723476 27.54976949272956 22.128577302949104 42-43 22.418689611782977 27.882079041508494 27.409677919378026 22.289553427330503 44-45 22.422309533544478 27.90310487161369 27.39129000475582 22.283295590086013 46-47 22.457050736777198 27.865321015948957 27.328243187859925 22.34938505941392 48-49 22.276867071949823 27.892536337293787 27.50914112146507 22.321455469291323 50-51 22.248517507019415 27.946412213046944 27.48773400777574 22.3173362721579 52-53 22.37328978451191 27.832677573101964 27.434312067497363 22.35972057488876 54-55 22.408981922909106 27.734214256982725 27.471036816224974 22.385767003883196 56-57 22.380380927717646 27.813023584508294 27.4347427149277 22.371852772846353 58-59 22.360691168556595 27.886932170554353 27.44519174574848 22.307184915140567 60-61 22.356405489728687 27.80311443278527 27.5167812885244 22.32369878896164 62-63 22.37341036882553 27.879566372414356 27.43017774098887 22.316845517771245 64-65 22.329551065237503 27.84656570265171 27.426349410179974 22.397533821930814 66-67 22.39630922152375 27.84997886347703 27.308174628433946 22.445537286565273 68-69 22.33672211331642 27.776020783762796 27.426918518038235 22.460338584882543 70-71 22.304482001428223 27.592514081521408 27.495327287094018 22.607676629956348 72-73 22.366973172931527 27.61494840378073 27.501559050147094 22.516519373140653 74-75 22.18753802028528 27.820984296566813 27.445215790691318 22.546261892456588 76-77 22.342154838529535 27.721514111292052 27.412477944653297 22.523853105525117 78-79 22.35462407944536 27.770850199549812 27.361890134404238 22.512635586600588 80-81 22.349687620644225 27.76043755642582 27.36211820092324 22.52775662200671 82-83 22.282496602330554 27.76839608371565 27.451143173723345 22.497964140230447 84-85 22.440499273090765 27.737466029932285 27.443380645520122 22.37865405145683 86-87 22.250211983977692 27.78266996734414 27.499736810930393 22.467381237747773 88-89 22.30748382653505 27.774291110147786 27.459828037392732 22.45839702592443 90-91 22.31359404677587 27.854215593379354 27.494069507829046 22.338120852015734 92-93 22.27899675664739 27.84426022956123 27.486832738860567 22.38991027493081 94-95 22.144163467204574 27.896013667896387 27.59049380240402 22.369329062495023 96-97 22.241389674556178 28.053100579868367 27.58896162627152 22.116548119303935 98-99 23.331055408508643 30.000213111470085 27.73405203992667 18.934679440094605 100 22.293621779544967 30.945968134997564 21.491086755262117 25.269323330195352 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3236.0 1 2583.5 2 2106.5 3 2226.5 4 2165.0 5 2330.0 6 2770.0 7 3187.0 8 3487.0 9 3889.5 10 4364.5 11 4754.5 12 5148.5 13 5735.0 14 6609.0 15 7939.0 16 9509.5 17 11154.5 18 13234.0 19 15929.0 20 19421.5 21 23743.0 22 29421.5 23 37235.5 24 47630.0 25 61326.0 26 78539.5 27 97495.0 28 116716.5 29 137923.0 30 158880.5 31 179104.5 32 201030.5 33 221757.5 34 241759.0 35 260492.0 36 280094.5 37 298399.0 38 311218.0 39 322196.0 40 334615.5 41 346030.0 42 353916.5 43 360819.0 44 365287.5 45 369205.5 46 370970.5 47 369557.5 48 367991.0 49 362609.0 50 354459.5 51 344622.0 52 331294.0 53 314661.0 54 297062.0 55 278253.0 56 257661.5 57 234752.5 58 210803.0 59 186667.5 60 159860.5 61 133071.5 62 108495.0 63 86651.5 64 67910.5 65 52526.0 66 40260.0 67 31730.0 68 25356.5 69 19776.0 70 15416.0 71 12006.5 72 9281.5 73 7058.0 74 5379.5 75 4248.0 76 3340.5 77 2585.5 78 1997.0 79 1543.0 80 1194.5 81 915.5 82 722.0 83 508.0 84 351.5 85 267.5 86 223.5 87 190.5 88 128.0 89 75.5 90 50.5 91 40.0 92 29.5 93 20.0 94 16.0 95 13.5 96 14.0 97 13.5 98 8.0 99 11.5 100 36.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02112239090069327 3 0.012316534948167914 4 0.0047353344592388005 5 0.009400688606272103 6 0.00853759808907094 7 0.002565944780868316 8 0.008152706371940694 9 0.005166879717839381 10-11 0.003796431937148349 12-13 0.008887499650098439 14-15 0.004945275395855299 16-17 0.0037264516249428496 18-19 0.005196038181258339 20-21 0.004171911702976691 22-23 0.010078170635690832 24-25 0.009233137121377827 26-27 0.021965181180864518 28-29 0.01864452815900719 30-31 0.01546787141132909 32-33 0.011583919964358981 34-35 0.008444279317127452 36-37 0.010083167103762449 38-39 0.004957731447471368 40-41 0.00594211081029217 42-43 0.003805129703863653 44-45 0.007425053405509022 46-47 0.009229757257384131 48-49 0.00711213728099867 50-51 0.009620326406004395 52-53 8.277722426699652E-4 54-55 0.002372881399529308 56-57 6.370075103185466E-4 58-59 0.0026289078386407916 60-61 9.236467727549187E-4 62-63 0.006481598774662147 64-65 0.0033616716594848006 66-67 0.0036835503157510462 68-69 0.004883478260869565 70-71 7.32416854489335E-4 72-73 5.061362605783369E-4 74-75 0.0 76-77 1.4618894555740929E-5 78-79 4.519039044867761E-4 80-81 2.0279455401984997E-4 82-83 0.0 84-85 9.501486364633212E-4 86-87 0.003501214473957833 88-89 0.021706083812795807 90-91 0.0027368566721966874 92-93 0.0012479681260675912 94-95 0.00127277251323852 96-97 4.5906973243250575E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3173.0 20-21 5915.0 22-23 6772.0 24-25 8042.0 26-27 10468.0 28-29 15503.0 30-31 26344.0 32-33 32508.0 34-35 41499.0 36-37 57154.0 38-39 62928.0 40-41 61868.0 42-43 67852.0 44-45 77178.0 46-47 77441.0 48-49 74986.0 50-51 73297.0 52-53 75346.0 54-55 82333.0 56-57 84410.0 58-59 83669.0 60-61 80901.0 62-63 80912.0 64-65 85483.0 66-67 88602.0 68-69 87560.0 70-71 86685.0 72-73 84651.0 74-75 87451.0 76-77 90626.0 78-79 91816.0 80-81 92596.0 82-83 91908.0 84-85 95094.0 86-87 114295.0 88-89 103559.0 90-91 105533.0 92-93 114153.0 94-95 138677.0 96-97 307172.0 98-99 517449.0 100-101 5000031.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.04807252756005 #Duplication Level Percentage of deduplicated Percentage of total 1 90.97821387076552 79.19478159450266 2 6.36288591967554 11.077539100410142 3 1.5142641548662958 3.9544132793605726 4 0.5454123064887381 1.8990836005062195 5 0.246576067648453 1.0731985710111545 6 0.12332854526853554 0.6441307291952372 7 0.06879293195068882 0.4191804490878945 8 0.04614375171803007 0.3213379716995844 9 0.02898695376710722 0.22709326084849615 >10 0.08420697816211718 1.070980765831493 >50 8.805900222988897E-4 0.047122345155475594 >100 2.679577885357352E-4 0.038171107945707765 >500 1.9987009783440083E-5 0.009012322908092554 >1k 1.9984868304196035E-5 0.023954901537276092 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.499015610274976E-5 2 0.0 3.499015610274976E-5 0.0 0.0 3.499015610274976E-5 3 0.0 3.499015610274976E-5 0.0 0.0 3.499015610274976E-5 4 0.0 5.8316926837916266E-5 0.0 0.0 4.665354147033301E-5 5 0.0 5.8316926837916266E-5 0.0 1.1663385367583252E-5 4.665354147033301E-5 6 0.0 5.8316926837916266E-5 0.0 2.3326770735166505E-5 6.998031220549952E-5 7 0.0 5.8316926837916266E-5 0.0 3.499015610274976E-5 6.998031220549952E-5 8 0.0 5.8316926837916266E-5 0.0 3.499015610274976E-5 8.164369757308277E-5 9 0.0 9.330708294066602E-5 0.0 4.665354147033301E-5 9.330708294066602E-5 10-11 0.0 9.330708294066602E-5 0.0 5.2485234154124634E-5 9.330708294066602E-5 12-13 0.0 1.1663385367583253E-4 0.0 5.8316926837916266E-5 9.913877562445764E-5 14-15 0.0 1.6328739514616554E-4 0.0 6.41486195217079E-5 1.282972390434158E-4 16-17 0.0 1.8078247319754041E-4 0.0 6.998031220549952E-5 1.5745570246237392E-4 18-19 0.0 2.2160432198408181E-4 0.0 6.998031220549952E-5 1.6911908782995717E-4 20-21 0.0 2.4493109271924834E-4 0.0 8.164369757308277E-5 1.924458585651237E-4 22-23 0.0 2.857529415057897E-4 0.0 1.1080216099204091E-4 1.9827755124891532E-4 24-25 5.831692683791626E-6 3.5573325371128923E-4 0.0 1.8078247319754044E-4 1.9827755124891532E-4 26-27 1.1663385367583252E-5 3.848917171302474E-4 0.0 4.082184878654139E-4 2.2743601466787344E-4 28-29 1.1663385367583252E-5 3.90723409814039E-4 0.0 0.0016270422587778637 2.3326770735166506E-4 30-31 1.1663385367583252E-5 4.898621854384967E-4 0.0 0.006274901327759791 2.3326770735166506E-4 32-33 1.1663385367583252E-5 5.073572634898716E-4 0.0 0.01756505836358038 2.4493109271924834E-4 34-35 1.1663385367583252E-5 6.531495805846622E-4 0.0 0.030004058858107918 2.4493109271924834E-4 36-37 1.1663385367583252E-5 8.047735903632446E-4 0.0 0.04602371866048352 2.4493109271924834E-4 38-39 1.1663385367583252E-5 8.339320537822026E-4 0.0 0.06300560775568473 2.4493109271924834E-4 40-41 1.1663385367583252E-5 9.505659074580352E-4 0.0 0.07892612878243588 2.5076278540304E-4 42-43 1.1663385367583252E-5 9.6806098550941E-4 0.0 0.09560476985807992 2.565944780868316E-4 44-45 1.1663385367583252E-5 0.0011196849952879923 0.0 0.1121317869239454 2.6825786345441484E-4 46-47 1.1663385367583252E-5 0.0012538139270151997 0.0 0.1292011514094035 2.9158463418958134E-4 48-49 1.1663385367583252E-5 0.0012596456196989913 0.0 0.1435587787968985 3.324064829761227E-4 50-51 1.1663385367583252E-5 0.0014054379367937821 0.0 0.15756650462336597 3.3823817565991433E-4 52-53 1.1663385367583252E-5 0.0014171013221613653 0.0 0.1714809233668928 3.7906002444645573E-4 54-55 1.1663385367583252E-5 0.0014404280928965317 0.0 0.18471886575909977 4.257135659167888E-4 56-57 1.1663385367583252E-5 0.0014579231709479067 0.0 0.1978051841415282 4.37376951284372E-4 58-59 1.1663385367583252E-5 0.00146958655631549 0.0 0.21176625642652536 4.548720293357469E-4 60-61 1.1663385367583252E-5 0.00146958655631549 0.0 0.22307974023308108 4.898621854384967E-4 62-63 1.1663385367583252E-5 0.0014929133270506563 0.0 0.23349514336633292 4.898621854384967E-4 64-65 1.1663385367583252E-5 0.0016678641075644053 0.0 0.24252843533352617 4.898621854384967E-4 66-67 1.1663385367583252E-5 0.001673695800248197 0.0 0.2508619241786644 5.131889561736632E-4 68-69 1.1663385367583252E-5 0.0017145176490347383 0.0 0.25838480774075556 5.248523415412464E-4 70-71 1.1663385367583252E-5 0.0017436761124536963 0.0 0.26500961062954287 5.598424976439962E-4 72-73 1.1663385367583252E-5 0.001761171190505071 0.0 0.2713253338060892 6.064960391143292E-4 74-75 1.1663385367583252E-5 0.0017961613466078211 0.0 0.2771920166459836 6.064960391143292E-4 76-77 1.1663385367583252E-5 0.001860309966129529 0.0 0.281180894441697 6.064960391143292E-4 78-79 1.1663385367583252E-5 0.0019011318149160703 0.0 0.28358355182741923 6.123277317981208E-4 80-81 1.1663385367583252E-5 0.0019011318149160703 0.0 0.28484319744711817 6.589812732684538E-4 82-83 1.1663385367583252E-5 0.001918626892967445 0.0 0.2859803775204576 6.998031220549952E-4 84-85 1.1663385367583252E-5 0.0019594487417539867 0.0 0.28644108124247714 6.998031220549952E-4 86-87 1.1663385367583252E-5 0.001982775512489153 0.0 0.28652855663273397 7.172982001063701E-4 88 1.1663385367583252E-5 0.0020994093661649855 0.0 0.28654605171078534 7.581200488929115E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7095 0.0 38.447372 1 GTATCAA 11380 0.0 30.819197 1 TCAACGC 12690 0.0 26.228052 4 ATCAACG 12895 0.0 25.909634 3 CAACGCA 13270 0.0 25.143862 5 AACGCAG 13815 0.0 24.212793 6 TATCAAC 14140 0.0 23.983345 2 ACGCAGA 16650 0.0 19.941986 7 GTACATG 26850 0.0 19.701513 1 CGCAGAG 16935 0.0 19.581675 8 TACATGG 26765 0.0 19.098606 2 ACATGGG 26965 0.0 18.201153 3 CATGGGG 19815 0.0 16.7134 4 ACCGAAC 1125 0.0 15.84386 8 GGACCGA 1435 0.0 15.597826 6 GCAGAGT 21120 0.0 15.328499 9 AGAGTAC 17780 0.0 15.142012 10-11 AGGACCG 1895 0.0 14.654554 5 CAGAGTA 20280 0.0 14.511977 10-11 GTATAAT 5065 0.0 14.241737 1 >>END_MODULE