##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138838_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10633143 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92789093497567 33.0 31.0 34.0 30.0 34.0 2 32.17993090095751 34.0 31.0 34.0 30.0 34.0 3 32.27899756450186 34.0 31.0 34.0 30.0 34.0 4 35.674710854542255 37.0 35.0 37.0 35.0 37.0 5 35.78329897378414 37.0 35.0 37.0 35.0 37.0 6 35.82028954185982 37.0 36.0 37.0 35.0 37.0 7 35.75020527796908 37.0 36.0 37.0 35.0 37.0 8 35.69039436411229 37.0 36.0 37.0 35.0 37.0 9 37.42097280173886 39.0 38.0 39.0 35.0 39.0 10-11 37.41814118365567 39.0 38.0 39.0 35.0 39.0 12-13 37.34957914136959 39.0 38.0 39.0 34.5 39.0 14-15 38.75179723436429 41.0 39.0 41.0 35.0 41.0 16-17 38.75163340698042 41.0 38.5 41.0 34.5 41.0 18-19 38.76202788770921 40.5 38.5 41.0 34.0 41.0 20-21 38.80349301638498 40.5 39.0 41.0 34.0 41.0 22-23 38.76040332250319 40.0 38.5 41.0 34.0 41.0 24-25 38.72791281936736 40.0 38.0 41.0 34.0 41.0 26-27 38.68338537164537 40.0 38.0 41.0 34.0 41.0 28-29 38.610105041700734 40.0 38.0 41.0 34.0 41.0 30-31 38.489381559398524 40.0 38.0 41.0 34.0 41.0 32-33 38.436741364189686 40.0 38.0 41.0 34.0 41.0 34-35 38.2817212183309 40.0 38.0 41.0 33.0 41.0 36-37 38.16096904504952 40.0 38.0 41.0 33.0 41.0 38-39 38.14833204856911 40.0 38.0 41.0 33.0 41.0 40-41 38.06271275448987 40.0 38.0 41.0 33.0 41.0 42-43 37.87871611547177 40.0 37.5 41.0 32.5 41.0 44-45 37.93564099618454 40.0 37.5 41.0 32.5 41.0 46-47 38.14658262107682 40.0 38.0 41.0 33.0 41.0 48-49 38.13695864635858 40.0 38.0 41.0 33.0 41.0 50-51 38.04044468426477 40.0 37.5 41.0 33.0 41.0 52-53 37.96314752434192 40.0 37.0 41.0 33.0 41.0 54-55 37.88256185145991 40.0 37.0 41.0 33.0 41.0 56-57 37.93521971470146 40.0 37.0 41.0 33.0 41.0 58-59 37.73764939437673 40.0 36.5 41.0 32.0 41.0 60-61 37.64935260422416 39.5 36.0 41.0 32.0 41.0 62-63 37.42035917529204 39.0 35.5 41.0 32.0 41.0 64-65 37.21402545587401 39.0 35.0 41.0 32.0 41.0 66-67 36.9398978925673 38.5 35.0 41.0 31.0 41.0 68-69 36.70406783586989 38.0 35.0 40.0 31.0 41.0 70-71 36.412533200905784 37.0 35.0 40.0 31.0 41.0 72-73 36.08396955549672 37.0 35.0 39.0 31.0 41.0 74-75 35.74751745899742 36.0 34.5 39.0 31.0 41.0 76-77 35.42055205835942 36.0 34.0 39.0 31.0 40.5 78-79 35.073686257510026 35.0 34.0 37.5 30.0 39.5 80-81 34.762109213141294 35.0 34.0 37.0 30.0 39.0 82-83 34.45939047067336 35.0 34.0 36.5 30.0 39.0 84-85 34.23860876663582 35.0 34.0 36.0 30.0 37.5 86-87 34.02113509701282 35.0 34.0 36.0 30.0 37.0 88-89 33.7918359243098 35.0 34.0 35.5 30.0 37.0 90-91 33.62685462615681 35.0 34.0 35.0 29.0 36.0 92-93 33.53577784532223 35.0 34.0 35.0 29.0 36.0 94-95 33.51350904760233 35.0 34.0 35.0 29.5 36.0 96-97 33.4712707264853 35.0 33.0 35.0 29.5 36.0 98-99 33.51054847891052 35.0 33.0 35.0 30.0 35.5 100 32.91515547123624 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 7.0 16 59.0 17 351.0 18 1746.0 19 5233.0 20 11235.0 21 20062.0 22 30472.0 23 42064.0 24 56080.0 25 71654.0 26 85130.0 27 92608.0 28 106674.0 29 128706.0 30 151576.0 31 183250.0 32 235333.0 33 317252.0 34 448358.0 35 663459.0 36 1084454.0 37 1954481.0 38 2897729.0 39 1924270.0 40 120898.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.67435188259953 20.789770249492552 14.792108034284876 23.74376983362304 2 14.14101659380628 21.245050012068667 41.946831264602565 22.667102129522483 3 17.79888005951947 26.376963858005432 30.537768010447884 25.28638807202721 4 12.321874655246958 18.50268010369231 39.52929341626436 29.646151824796373 5 13.38619447292467 38.15414084831332 35.59872699109389 12.860937687668129 6 29.27878710298058 38.3183860319253 19.428344139100616 12.9744827259935 7 26.196388244867126 33.04362072357742 23.397595900096643 17.362395131458815 8 24.12560274880165 36.84837573376684 21.684980348235218 17.3410411691963 9 24.986607151254546 18.018366260554863 21.681696001143656 35.313330587046934 10-11 23.741270905224447 27.389049938355196 29.255633264548603 19.614045891871758 12-13 24.368367595222537 24.8178947050617 29.17087598179601 21.64286171791975 14-15 21.800675544767774 26.416506248140152 26.551407350447736 25.231410856644338 16-17 21.678584029481407 29.419677560868507 27.216161824019792 21.685576585630294 18-19 21.751209674669873 28.973273708012904 28.304880104716595 20.970636512600628 20-21 22.721097883392517 28.098484008035435 27.981339046096842 21.199079062475214 22-23 22.372053342574056 27.99027464156103 27.78059749558837 21.85707452027654 24-25 22.092098170161734 28.129326682711326 27.877004736078035 21.901570411048905 26-27 22.10767561424412 28.27941559754211 27.749014042762845 21.863894745450928 28-29 22.01536684046787 28.34740126830968 27.79306466622945 21.844167224993 30-31 22.363618315108152 28.142186528804686 27.707549765989743 21.78664539009742 32-33 22.11418671423834 28.27091012826764 27.695309305560855 21.919593851933165 34-35 22.231238138572103 28.26247878805287 27.690471919576353 21.815811153798673 36-37 22.24522911331064 28.115986824098815 27.74462003854314 21.89416402404741 38-39 22.011637953620998 28.2245230826586 27.877054956917824 21.886784006802582 40-41 22.26521305835049 28.10218075075647 27.788752619150003 21.843853571743036 42-43 22.171747625503542 28.10037365617019 27.75615676831178 21.97172195001449 44-45 22.19981087487122 28.1314862386687 27.710666175340975 21.958036711119103 46-47 22.189818481018932 28.06151427764959 27.647013176186764 22.101654065144714 48-49 22.02521065942461 28.07183379889992 27.860885758837707 22.04206978283777 50-51 21.996006275909473 28.127227520980647 27.84366488393089 22.033101319178996 52-53 22.12709789067782 28.041942746824915 27.751640200789986 22.079319161707286 54-55 22.162426921284048 27.954069228166293 27.798317860759635 22.085185989790023 56-57 22.11399963079742 28.07997063666453 27.76862831775541 22.037401414782632 58-59 22.090875868658447 28.15196622368003 27.774087203553975 21.983070704107547 60-61 22.133238578703622 28.04994479200567 27.795666611560915 22.02115001772979 62-63 22.10878607229342 28.125893166774006 27.766339950230368 21.998980810702207 64-65 22.08436861121524 28.117604076683158 27.745598617511323 22.052428694590283 66-67 22.172654826512044 28.10743343090481 27.626570505954966 22.093341236628177 68-69 22.074083091870914 28.08889722307855 27.71587678402384 22.121142901026698 70-71 22.06341793986982 27.80730152890222 27.851540757228953 22.27773977399901 72-73 22.12672305911903 27.904558310350296 27.79006331656729 22.17865531396338 74-75 21.92986871625299 28.102348914121716 27.7779767215515 22.189805648073794 76-77 22.080119906087685 28.01797156705035 27.696391164008 22.205517362853968 78-79 22.100622266247022 28.069246916744174 27.61693047952799 22.213200337480814 80-81 22.07494505276741 28.012475105450314 27.697712411634186 22.214867430148093 82-83 22.062475956797776 28.035614114044762 27.78156215789779 22.120347771259677 84-85 22.196738889878205 27.988492012163686 27.75055468348495 22.064214414473163 86-87 21.97113267957747 28.035486432032382 27.841261228417487 22.152119659972662 88-89 22.07037608141089 28.04367861898119 27.75708325399846 22.128862045609463 90-91 22.04644071289275 28.115219759699688 27.816235202016966 22.022104325390597 92-93 22.052690865743312 28.098354137947872 27.80690988856659 22.04204510774223 94-95 21.909947005861792 28.149224896712482 27.866117088282444 22.074711009143286 96-97 21.978316120469284 28.30338372420842 27.922310870554547 21.79598928476775 98-99 23.02318317696613 30.25735802860508 28.11660274319225 18.602856051236543 100 22.031681983474883 31.22508600075354 21.934761581874323 24.808470433897256 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3048.0 1 2338.0 2 1814.5 3 1974.5 4 1933.0 5 2091.0 6 2524.5 7 3023.5 8 3425.5 9 3790.0 10 4153.5 11 4493.5 12 4913.0 13 5602.0 14 6539.5 15 7759.0 16 9354.0 17 11199.5 18 13491.5 19 16625.0 20 20707.0 21 26010.5 22 33485.5 23 43332.5 24 56492.5 25 74308.0 26 97477.5 27 123057.0 28 147874.5 29 174487.0 30 201104.0 31 227488.0 32 255285.0 33 281806.5 34 308506.0 35 332489.5 36 357722.5 37 381615.5 38 396562.5 39 409470.5 40 425290.5 41 438503.0 42 445204.5 43 450938.0 44 453841.0 45 455441.5 46 455882.5 47 451953.0 48 444718.0 49 433127.0 50 420065.0 51 405233.5 52 387036.0 53 366518.5 54 343851.5 55 319041.5 56 292217.5 57 264778.5 58 238280.0 59 210157.0 60 178090.5 61 146333.5 62 117481.5 63 92246.0 64 71048.5 65 54123.5 66 41660.0 67 33221.0 68 26435.0 69 20272.5 70 15727.5 71 12086.5 72 9156.5 73 6935.0 74 5370.0 75 4205.5 76 3243.0 77 2548.5 78 2022.5 79 1576.0 80 1175.5 81 879.5 82 665.0 83 437.5 84 294.5 85 218.0 86 169.0 87 146.0 88 108.0 89 69.5 90 49.0 91 41.0 92 32.0 93 20.0 94 14.0 95 12.5 96 13.5 97 12.5 98 10.0 99 17.0 100 46.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.021715122236200528 3 0.012489251766857645 4 0.0050032243523857435 5 0.009498602623890228 6 0.00951741173799694 7 0.0028871990153804946 8 0.009583243637370438 9 0.005670947903174066 10-11 0.004269668902223924 12-13 0.009122420341755961 14-15 0.00506905625175924 16-17 0.003832356999242839 18-19 0.005976596007408158 20-21 0.004398800007357993 22-23 0.010201733993481718 24-25 0.009422548979469633 26-27 0.022987570255319525 28-29 0.01947270740734709 30-31 0.015448064807161623 32-33 0.012741466310506027 34-35 0.008806426751451824 36-37 0.010381393982449333 38-39 0.005062104189919006 40-41 0.006059716915540303 42-43 0.0039046614899186554 44-45 0.006963880379928157 46-47 0.010113696407959564 48-49 0.007652699975051601 50-51 0.010317326764083565 52-53 9.403978853788454E-4 54-55 0.002956991124897034 56-57 6.22536703297721E-4 58-59 0.0029760320351930073 60-61 0.0010486236840362617 62-63 0.007420011272912989 64-65 0.004060446803017895 66-67 0.003977394583123176 68-69 0.005023169574187388 70-71 9.371462100787428E-4 72-73 5.850074947817332E-4 74-75 0.0 76-77 1.7078690064472054E-5 78-79 3.858554158291829E-4 80-81 1.748516675020691E-4 82-83 0.0 84-85 9.61438149041664E-4 86-87 0.0035001945090789473 88-89 0.02178378061077566 90-91 0.0026817954857773158 92-93 0.0015135619584503812 94-95 0.0013076848451179358 96-97 4.619523505389466E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3563.0 20-21 6856.0 22-23 7779.0 24-25 8868.0 26-27 10952.0 28-29 15040.0 30-31 24782.0 32-33 30806.0 34-35 40599.0 36-37 57060.0 38-39 64384.0 40-41 63439.0 42-43 69725.0 44-45 78987.0 46-47 81493.0 48-49 80382.0 50-51 79095.0 52-53 80650.0 54-55 87409.0 56-57 91475.0 58-59 90973.0 60-61 89500.0 62-63 88105.0 64-65 92039.0 66-67 97422.0 68-69 97297.0 70-71 96705.0 72-73 93719.0 74-75 96579.0 76-77 99732.0 78-79 102968.0 80-81 103730.0 82-83 102214.0 84-85 105658.0 86-87 130007.0 88-89 116244.0 90-91 120617.0 92-93 128621.0 94-95 158993.0 96-97 375034.0 98-99 665444.0 100-101 6598198.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.22876743908743 #Duplication Level Percentage of deduplicated Percentage of total 1 90.25197247717942 77.82316345653624 2 6.829318202637423 11.777673821254979 3 1.6912936090845967 4.375144898669115 4 0.6057216330504264 2.089225193165179 5 0.2686816851491225 1.15840452719329 6 0.1304656149059782 0.6749933499915078 7 0.07616383041157225 0.4597259253880691 8 0.04075070819863003 0.2811106672190226 9 0.026712778513721915 0.20730689695004204 >10 0.07760088331527523 0.9743967638139726 >50 9.619665099112868E-4 0.0558798141690611 >100 2.752350631824334E-4 0.04065761404165887 >500 4.8829926598522834E-5 0.027858760606555993 >1k 3.254605413325181E-5 0.054458311001312466 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.880911410671332E-5 0.0 0.0 0.0 3 0.0 1.880911410671332E-5 0.0 2.821367116006998E-5 0.0 4 0.0 1.1285468464027992E-4 0.0 2.821367116006998E-5 0.0 5 0.0 1.1285468464027992E-4 0.0 4.7022785266783305E-5 0.0 6 3.761822821342664E-5 1.222592416936366E-4 0.0 5.642734232013996E-5 0.0 7 3.761822821342664E-5 1.222592416936366E-4 0.0 7.523645642685329E-5 0.0 8 3.761822821342664E-5 1.410683558003499E-4 0.0 8.464101348020994E-5 0.0 9 3.761822821342664E-5 3.4796861097419646E-4 0.0 1.1285468464027992E-4 9.40455705335666E-6 10-11 3.761822821342664E-5 3.573731680275531E-4 0.0 1.269615202203149E-4 9.40455705335666E-6 12-13 3.761822821342664E-5 3.6677772508090974E-4 0.0 1.5987746990706324E-4 9.40455705335666E-6 14-15 3.761822821342664E-5 4.5612101708779806E-4 0.0 1.6928202696041988E-4 2.821367116006998E-5 16-17 7.523645642685329E-5 4.70227852667833E-4 0.0 2.021979766471682E-4 4.7022785266783305E-5 18-19 7.523645642685329E-5 5.078460808812596E-4 0.0 2.3041164780723816E-4 4.7022785266783305E-5 20-21 7.523645642685329E-5 5.501665876213647E-4 0.0 2.7273215454734316E-4 4.7022785266783305E-5 22-23 7.523645642685329E-5 5.830825373081129E-4 0.0 3.620754465542314E-4 5.642734232013996E-5 24-25 7.523645642685329E-5 6.489144366816095E-4 0.0 4.514187385611197E-4 7.523645642685329E-5 26-27 7.523645642685329E-5 6.771281078416795E-4 0.0 6.583189937349662E-4 7.993873495353162E-5 28-29 7.523645642685329E-5 6.865326648950363E-4 0.0 0.00216775040079871 8.464101348020994E-5 30-31 7.993873495353162E-5 7.711736783752462E-4 0.0 0.007739950454912532 8.464101348020994E-5 32-33 8.464101348020994E-5 7.758759569019245E-4 0.0 0.02024330905735021 8.464101348020994E-5 34-35 8.464101348020994E-5 9.12242034175596E-4 0.0 0.03229054664270009 8.464101348020994E-5 36-37 8.464101348020994E-5 0.0010439058329225893 0.0 0.04808079793528593 8.464101348020994E-5 38-39 8.464101348020994E-5 0.0011050354537694078 0.0 0.06437419303022635 8.464101348020994E-5 40-41 8.464101348020994E-5 0.0012037833028296526 0.0 0.07893244734882246 8.464101348020994E-5 42-43 8.464101348020994E-5 0.0012461038095697575 0.0 0.09371641103669912 8.464101348020994E-5 44-45 8.464101348020994E-5 0.0013918744438967856 0.0 0.1076774759824071 8.464101348020994E-5 46-47 8.464101348020994E-5 0.001495324571483709 0.0 0.12396146652029413 8.464101348020994E-5 48-49 8.464101348020994E-5 0.0015000268500103874 0.0 0.13643661145157174 8.464101348020994E-5 50-51 8.464101348020994E-5 0.0016646065984441288 0.0 0.14702144041512466 8.464101348020994E-5 52-53 8.464101348020994E-5 0.0016740111554974855 0.0 0.15758746026457088 8.934329200688828E-5 54-55 8.464101348020994E-5 0.0016834157125508423 0.0 0.16762212264050244 9.404557053356661E-5 56-57 8.464101348020994E-5 0.0017492476119243389 0.0 0.1773511369121999 9.404557053356661E-5 58-59 8.464101348020994E-5 0.001753949890451017 0.0 0.1862713592773087 9.404557053356661E-5 60-61 8.934329200688828E-5 0.001782163561611087 0.0 0.19461320138363605 1.0345012758692327E-4 62-63 9.404557053356661E-5 0.0018338886254045488 0.0 0.20199577867052104 1.1285468464027992E-4 64-65 9.404557053356661E-5 0.002059597994685109 0.0 0.20872944152072442 1.1285468464027992E-4 66-67 1.0345012758692327E-4 0.002059597994685109 0.0 0.21525150183722724 1.2225924169363656E-4 68-69 1.0345012758692327E-4 0.002116025337005249 0.0 0.2217030279758299 1.3166379874699323E-4 70-71 1.0345012758692327E-4 0.002148941286691997 0.0 0.2276467080335513 1.3166379874699323E-4 72-73 1.1285468464027992E-4 0.002163048122272032 0.0 0.23306843517481143 1.5047291285370657E-4 74-75 1.1285468464027992E-4 0.0022147731860654935 0.0 0.2384854600375449 1.5047291285370657E-4 76-77 1.1285468464027992E-4 0.0023229255921790952 0.0 0.2420827031104538 1.5047291285370657E-4 78-79 1.1285468464027992E-4 0.002360543820392522 0.0 0.24417051477629897 1.5047291285370657E-4 80-81 1.1285468464027992E-4 0.002360543820392522 0.0 0.2452285274448016 1.5987746990706324E-4 82-83 1.1285468464027992E-4 0.002360543820392522 0.0 0.24619249454277065 1.833888625404549E-4 84-85 1.1285468464027992E-4 0.0023699483774458786 0.0 0.24642760846910455 1.8809114106713322E-4 86-87 1.1285468464027992E-4 0.002407566605659305 0.0 0.2465310585966915 1.8809114106713322E-4 88 1.1285468464027992E-4 0.0026050623037797947 0.0 0.24654046315374487 1.8809114106713322E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8705 0.0 36.936676 1 GTATCAA 13960 0.0 31.507015 1 TCAACGC 14900 0.0 28.209341 4 ATCAACG 15075 0.0 27.883703 3 CAACGCA 15540 0.0 27.128733 5 AACGCAG 16270 0.0 26.067429 6 TATCAAC 17100 0.0 24.931313 2 ACGCAGA 19490 0.0 21.631624 7 CGCAGAG 20130 0.0 20.880728 8 GTACATG 32355 0.0 19.392195 1 TACATGG 31795 0.0 19.269005 2 ACATGGG 32995 0.0 18.053263 3 GCAGAGT 25960 0.0 16.126396 9 CATGGGG 23770 0.0 15.834511 4 AGAGTAC 21955 0.0 14.844122 10-11 CAGAGTA 24915 0.0 14.462394 10-11 GTATAGC 4105 0.0 14.100981 1 GTATAAT 7150 0.0 13.709572 1 GTGGTAT 6265 0.0 13.083459 1 TATACTG 5725 0.0 12.838779 5 >>END_MODULE