##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138837_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8668014 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.10636611800581 32.0 28.0 33.0 18.0 33.0 2 30.4693048488385 32.0 30.0 33.0 25.0 33.0 3 32.006131162224705 33.0 31.0 33.0 29.0 34.0 4 32.34246010677879 33.0 33.0 33.0 31.0 34.0 5 32.76418600616012 33.0 33.0 34.0 32.0 34.0 6 36.9117614484702 38.0 37.0 38.0 35.0 38.0 7 37.07525218579481 38.0 38.0 38.0 36.0 38.0 8 37.268164772230406 38.0 38.0 38.0 36.0 38.0 9 37.36888807516924 38.0 38.0 38.0 37.0 38.0 10-11 37.42793060786473 38.0 38.0 38.0 37.0 38.0 12-13 37.463470813498915 38.0 38.0 38.0 37.0 38.0 14-15 37.463025094329566 38.0 38.0 38.0 37.0 38.0 16-17 37.396442137726126 38.0 38.0 38.0 37.0 38.0 18-19 37.43138958935691 38.0 38.0 38.0 37.0 38.0 20-21 37.46068714548966 38.0 38.0 38.0 37.0 38.0 22-23 37.46810143087344 38.0 38.0 38.0 37.0 38.0 24-25 37.467584273099135 38.0 38.0 38.0 37.0 38.0 26-27 37.43698871949455 38.0 38.0 38.0 37.0 38.0 28-29 37.41136962329234 38.0 38.0 38.0 37.0 38.0 30-31 37.312254134484604 38.0 38.0 38.0 37.0 38.0 32-33 37.37358196434592 38.0 38.0 38.0 37.0 38.0 34-35 37.38031146739806 38.0 38.0 38.0 37.0 38.0 36-37 37.36059466634421 38.0 38.0 38.0 37.0 38.0 38-39 37.33471890955617 38.0 38.0 38.0 37.0 38.0 40-41 37.32464154025588 38.0 38.0 38.0 37.0 38.0 42-43 37.30087280198842 38.0 38.0 38.0 37.0 38.0 44-45 37.26468536400962 38.0 38.0 38.0 37.0 38.0 46-47 37.23384541854985 38.0 38.0 38.0 37.0 38.0 48-49 37.20281954405853 38.0 38.0 38.0 37.0 38.0 50-51 37.158436304910126 38.0 38.0 38.0 37.0 38.0 52-53 37.13471135897824 38.0 38.0 38.0 36.5 38.0 54-55 37.12122734526385 38.0 38.0 38.0 36.0 38.0 56-57 37.11079855397606 38.0 38.0 38.0 36.0 38.0 58-59 37.099563589886614 38.0 38.0 38.0 36.0 38.0 60-61 37.100449853711496 38.0 38.0 38.0 36.0 38.0 62-63 37.10647986585535 38.0 38.0 38.0 36.0 38.0 64-65 37.1095998878198 38.0 38.0 38.0 36.0 38.0 66-67 37.09100896691161 38.0 38.0 38.0 36.0 38.0 68-69 37.09167020257791 38.0 38.0 38.0 36.0 38.0 70-71 37.07257568046494 38.0 38.0 38.0 36.0 38.0 72-73 37.06228776017922 38.0 38.0 38.0 36.0 38.0 74-75 37.05155496860412 38.0 38.0 38.0 36.0 38.0 76-77 37.05269074852259 38.0 38.0 38.0 36.0 38.0 78-79 37.03413574950284 38.0 38.0 38.0 36.0 38.0 80-81 37.03020079675308 38.0 38.0 38.0 36.0 38.0 82-83 36.97863876403422 38.0 38.0 38.0 36.0 38.0 84-85 36.96530191670061 38.0 38.0 38.0 36.0 38.0 86-87 36.95536267026065 38.0 38.0 38.0 36.0 38.0 88-89 36.95809932443134 38.0 38.0 38.0 36.0 38.0 90-91 36.9496090673739 38.0 38.0 38.0 36.0 38.0 92-93 36.92938430950534 38.0 38.0 38.0 35.5 38.0 94-95 36.90080126451523 38.0 38.0 38.0 35.0 38.0 96-97 36.87109893997679 38.0 38.0 38.0 35.0 38.0 98-99 36.87455057377795 38.0 38.0 38.0 35.0 38.0 100 35.270453863789605 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 12.0 19 26.0 20 72.0 21 219.0 22 733.0 23 1699.0 24 3729.0 25 7530.0 26 13141.0 27 21338.0 28 33490.0 29 48381.0 30 66889.0 31 88083.0 32 115083.0 33 151465.0 34 221631.0 35 393187.0 36 1142710.0 37 6358596.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.654237521997544 19.15492983744604 14.846907261571104 25.343925378985315 2 13.568148854845136 20.684124304299484 43.44510191877718 22.302624922078195 3 17.31936519714897 26.93312447349531 30.999084680758475 24.748425648597244 4 11.827735302522791 18.948306815414213 39.98971579529933 29.23424208676366 5 12.983675053015324 37.80858690757734 36.14802272831892 13.059715311088413 6 28.614120835522417 38.90779364223454 19.46871567120219 13.00936985104085 7 25.54444420601997 33.28861720804789 23.73093767499683 17.436000910935306 8 23.721800633916835 36.89982503489265 21.8240764262725 17.554297904918013 9 24.973024333072566 17.451275075429766 21.99345477392297 35.582245817574695 10-11 23.358764306328347 27.310368450018913 29.53865744974878 19.79220979390396 12-13 24.475993001395707 24.80628780710322 29.600182925408287 21.117536266092788 14-15 21.631581351852915 26.219097015763932 27.417831812454384 24.731489819928765 16-17 21.094930165087412 29.480288102903383 27.94116968431292 21.483612047696276 18-19 20.987460334051143 28.46512476791108 29.960380774650343 20.587034123387433 20-21 21.843438997499565 27.591604943142716 29.856205431393224 20.7087506279645 22-23 21.570002892431212 27.555570272175817 29.700203600851875 21.1742232345411 24-25 21.34416446002085 27.66965105910057 29.82011319849289 21.166071282385683 26-27 21.34467872192095 27.871296637296382 29.66511436674893 21.118910274033738 28-29 21.23366948705189 27.81373337022586 29.760200881888387 21.192396260833863 30-31 21.530251803452792 27.7324344674527 29.62934549310975 21.10796823598476 32-33 21.468847598908088 27.732294913212396 29.594117008133907 21.204740479745602 34-35 21.455833497328317 27.762602079264997 29.642700895015313 21.138863528391376 36-37 21.349709188292906 27.828447832047594 29.607802665275955 21.21404031438355 38-39 21.238582854801173 27.79220751881704 29.707271759135324 21.26193786724646 40-41 21.496218829631726 27.670030679111544 29.60769714422945 21.226053347027282 42-43 21.47588999940239 27.7115648806297 29.47239702746267 21.34014809250524 44-45 21.532703450150155 27.865030845666006 29.313003013529826 21.289262690654013 46-47 21.580058064753576 27.83180762600707 29.050485309559797 21.537648999679547 48-49 21.56291366416262 27.873967196271522 29.05454807396849 21.508571065597373 50-51 21.479446352023693 28.034328645109973 29.00310682591039 21.483118176955944 52-53 21.618673332538922 27.959838380655004 28.931152243749338 21.490336043056733 54-55 21.619741565961924 27.872294129143153 28.91235186669888 21.595612438196042 56-57 21.669899050484673 28.060359036258053 28.771411186485206 21.498330726772068 58-59 21.55535374495667 28.186117062527437 28.899297169669776 21.35923202284612 60-61 21.670815490376643 28.20851962424809 28.786061761177233 21.334603124198033 62-63 21.599355818969197 28.2872549149786 28.71584901580292 21.397540250249282 64-65 21.565318190215994 28.25881101538788 28.7219576007824 21.453913193613722 66-67 21.620763204454295 28.205950330426038 28.615263640115746 21.55802282500392 68-69 21.60973202684697 28.171325558829132 28.713796882887955 21.50514553143595 70-71 21.619844397674147 27.94888050616226 28.7667754581318 21.664499638031792 72-73 21.693834421139428 27.916580637270695 28.747479941451793 21.642105000138084 74-75 21.607887903468455 28.0164020631956 28.694501868050292 21.68120816528565 76-77 21.716085661132766 27.984052857626796 28.58101291943035 21.71884856181009 78-79 21.72109236962269 27.98543934021304 28.533717158968418 21.759751131195852 80-81 21.667765484485113 28.053198508861517 28.53212310176002 21.746912904893353 82-83 21.746234941765454 27.9719096283542 28.58312417386937 21.698731256010976 84-85 21.88146270295813 27.979665772065648 28.51702532401979 21.621846200956433 86-87 21.696972791645344 28.007345456523357 28.561362826534115 21.73431892529719 88-89 21.81359633139692 27.983394425891067 28.48042573746479 21.722583505247226 90-91 21.828995495797372 28.0294025318063 28.485113557403015 21.656488414993316 92-93 21.81748920222854 28.020437500426905 28.475607395989627 21.68646590135493 94-95 21.739447245073425 28.11906637149686 28.444832873629117 21.696653509800598 96-97 21.83360678057965 28.20740666784361 28.507970624590573 21.451015926986162 98-99 22.875251564736384 30.11706251568421 28.762056507764434 18.245629411814974 100 21.763811861919905 31.068136942532988 22.802778956307396 24.36527223923971 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1388.0 1 1313.0 2 1922.0 3 2892.0 4 3742.0 5 5114.0 6 6371.5 7 8219.0 8 10855.0 9 12492.5 10 12478.5 11 12520.0 12 14049.5 13 16956.0 14 22005.5 15 27830.0 16 32145.0 17 34529.0 18 34447.5 19 32228.5 20 30007.0 21 29218.0 22 31345.0 23 37470.0 24 47584.0 25 61258.5 26 78981.5 27 99841.5 28 121153.5 29 143725.5 30 166019.5 31 187037.5 32 209623.5 33 230853.0 34 250660.0 35 268619.5 36 286001.5 37 304211.0 38 317367.5 39 325197.5 40 334284.5 41 342724.0 42 348745.0 43 359465.5 44 364591.0 45 363930.5 46 361749.0 47 353768.5 48 344332.5 49 331711.0 50 318055.0 51 304839.5 52 288633.0 53 270624.5 54 252301.5 55 231607.0 56 209718.5 57 186219.5 58 161915.0 59 139204.0 60 115892.5 61 93228.5 62 72773.5 63 55394.5 64 41168.0 65 29686.0 66 21378.0 67 16243.0 68 12165.5 69 8597.0 70 6257.0 71 4569.5 72 3108.0 73 1949.5 74 1200.5 75 706.5 76 429.5 77 254.0 78 160.5 79 107.0 80 73.0 81 47.5 82 34.0 83 25.5 84 17.0 85 9.5 86 5.5 87 5.5 88 5.0 89 4.0 90 3.5 91 3.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007741104248331856 3 0.0 4 0.004072443814696192 5 0.0027341903231812965 6 0.0 7 0.0 8 0.0 9 1.9612335651511407E-4 10-11 4.6723505522718354E-4 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.287536892721277E-4 24-25 0.001534566189964641 26-27 0.0 28-29 0.002181644405813563 30-31 0.003292708626018545 32-33 7.233381046643619E-4 34-35 1.7399995267201286E-5 36-37 0.0012161984128203373 38-39 0.0022980242780125215 40-41 0.0017636430280692605 42-43 0.0 44-45 0.0 46-47 0.0014985310798942444 48-49 5.856890208668318E-4 50-51 0.0018419577177694027 52-53 0.002605827486635347 54-55 0.0020066167880823703 56-57 0.00203852894051207 58-59 0.002183449564592084 60-61 9.295355525366586E-4 62-63 8.978492842370797E-4 64-65 0.0034950114600088883 66-67 0.002629613488506184 68-69 8.405188535814217E-5 70-71 0.0030899167736783938 72-73 0.010243572158470559 74-75 0.012571771035328399 76-77 0.005045042351662408 78-79 0.004472325451862915 80-81 3.9315967244647537E-4 82-83 6.832108916933785E-5 84-85 2.0653107717866707E-5 86-87 0.0020327316979393997 88-89 0.004427341554852978 90-91 5.5023629121552E-4 92-93 9.889795659034281E-4 94-95 0.002361819557272976 96-97 0.0023649850070865865 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 287.0 22-23 561.0 24-25 796.0 26-27 2054.0 28-29 5365.0 30-31 14190.0 32-33 18545.0 34-35 24822.0 36-37 39014.0 38-39 45982.0 40-41 45558.0 42-43 51724.0 44-45 61740.0 46-47 61809.0 48-49 57320.0 50-51 51832.0 52-53 50156.0 54-55 53098.0 56-57 54679.0 58-59 53842.0 60-61 53693.0 62-63 53134.0 64-65 56356.0 66-67 61903.0 68-69 63261.0 70-71 66736.0 72-73 57201.0 74-75 55650.0 76-77 57337.0 78-79 58427.0 80-81 58490.0 82-83 55779.0 84-85 55303.0 86-87 57703.0 88-89 60159.0 90-91 61015.0 92-93 60803.0 94-95 73844.0 96-97 260516.0 98-99 599227.0 100-101 6048026.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.26437511345006 #Duplication Level Percentage of deduplicated Percentage of total 1 88.19042877614817 73.43120943033202 2 8.06195251754015 13.425468771345722 3 2.1350291974705757 5.3331561592907475 4 0.765088854224027 2.5481858141291633 5 0.35040170036871404 1.4587989309945668 6 0.1796547603210648 0.8975304812574062 7 0.10086999463265059 0.58792139495493 8 0.058547623502368314 0.3899945028241792 9 0.04054089247802381 0.3038050870851798 >10 0.11514715046373929 1.3745847622830993 >50 0.0017606797731683293 0.09984243333939391 >100 4.870245573706795E-4 0.07589748097340138 >500 6.81213960982634E-5 0.046586726982305864 >1k 2.2707123948640303E-5 0.027018024207900764 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1536668030300828E-5 0.0 2 0.0 1.1536668030300828E-5 0.0 2.3073336060601657E-5 0.0 3 0.0 1.1536668030300828E-5 0.0 4.614667212120331E-5 0.0 4 0.0 3.4610004090902485E-5 0.0 4.614667212120331E-5 0.0 5 0.0 4.614667212120331E-5 0.0 4.614667212120331E-5 0.0 6 0.0 4.614667212120331E-5 0.0 4.614667212120331E-5 1.1536668030300828E-5 7 0.0 6.922000818180497E-5 0.0 6.922000818180497E-5 1.1536668030300828E-5 8 0.0 9.229334424240663E-5 0.0 6.922000818180497E-5 1.1536668030300828E-5 9 0.0 1.730500204545124E-4 0.0 8.07566762121058E-5 1.1536668030300828E-5 10-11 0.0 1.730500204545124E-4 0.0 1.2113501431815869E-4 1.1536668030300828E-5 12-13 0.0 1.730500204545124E-4 0.0 1.3267168234845953E-4 1.1536668030300828E-5 14-15 0.0 2.1919669257571572E-4 0.0 1.4420835037876035E-4 1.7305002045451242E-5 16-17 0.0 2.2496502659086616E-4 0.0 1.7305002045451244E-4 2.3073336060601657E-5 18-19 0.0 2.3650169462116697E-4 0.0 2.0189169053026447E-4 2.3073336060601657E-5 20-21 0.0 2.4227002863631738E-4 0.0 2.480383626514678E-4 2.884167007575207E-5 22-23 0.0 3.114900368181223E-4 0.0 3.0572170280297197E-4 3.4610004090902485E-5 24-25 0.0 3.5186837492417523E-4 0.0 3.749417109847769E-4 3.4610004090902485E-5 26-27 0.0 3.691733769696265E-4 0.0 4.5569838719688267E-4 3.4610004090902485E-5 28-29 0.0 3.807100449999273E-4 0.0 6.864317478028992E-4 3.4610004090902485E-5 30-31 0.0 4.6146672121203313E-4 0.0 0.0014997668439391074 3.4610004090902485E-5 32-33 0.0 4.6146672121203313E-4 0.0 0.0031783520423478784 3.4610004090902485E-5 34-35 0.0 4.960767253029356E-4 0.0 0.005289562291892929 3.4610004090902485E-5 36-37 0.0 5.306867293938381E-4 0.0 0.00835831598795295 3.4610004090902485E-5 38-39 0.0 5.595283994695901E-4 0.0 0.013059508210300538 4.614667212120331E-5 40-41 0.0 5.768334015150414E-4 0.0 0.018187557149769256 4.614667212120331E-5 42-43 0.0 5.99906737575643E-4 0.0 0.023038726056510753 4.614667212120331E-5 44-45 0.0 6.979684158332001E-4 0.0 0.028460960030752144 4.614667212120331E-5 46-47 0.0 7.498834219695538E-4 0.0 0.034402344066357074 5.191500613635373E-5 48-49 0.0 7.498834219695538E-4 0.0 0.040684059808855866 8.07566762121058E-5 50-51 0.0 8.652501022725621E-4 0.0 0.04642355215393053 8.07566762121058E-5 52-53 0.0 8.652501022725621E-4 0.0 0.05248607120385362 8.652501022725622E-5 54-55 0.0 8.652501022725621E-4 0.0 0.05790253684407985 9.229334424240663E-5 56-57 0.0 8.767867703028629E-4 0.0 0.06230377569763962 1.0383001227270745E-4 58-59 0.0 8.940917723483141E-4 0.0 0.06682038123150238 1.0383001227270745E-4 60-61 0.0 9.171651084089159E-4 0.0 0.07089859338021373 1.0383001227270745E-4 62-63 0.0 9.402384444695175E-4 0.0 0.07494219552483418 1.1536668030300828E-4 64-65 0.0 0.0010383001227270744 0.0 0.07914154268786368 1.1536668030300828E-4 66-67 0.0 0.0010498367907573753 0.0 0.08286788646165084 1.1536668030300828E-4 68-69 0.0 0.0010613734587876763 0.0 0.08728066198324091 1.1536668030300828E-4 70-71 0.0 0.0010786784608331273 0.0 0.09084549240460388 1.4997668439391075E-4 72-73 0.0 0.0010844467948482779 0.0 0.09349892605157306 1.615133524242116E-4 74-75 0.0 0.0011248251329543306 0.0 0.09598507801210289 1.615133524242116E-4 76-77 0.0 0.0012171184771967373 0.0 0.09815973993581459 1.67281686439362E-4 78-79 0.0 0.0012574968153027902 0.0 0.0995787501035416 1.730500204545124E-4 80-81 0.0 0.0012632651493179408 0.0 0.10002868015672334 1.730500204545124E-4 82-83 0.0 0.0012921068193936926 0.0 0.10035170686157174 1.7881835446966285E-4 84-85 0.0 0.001367095161590648 0.0 0.10065742856437473 1.8458668848481325E-4 86-87 0.0 0.0013959368316664002 0.0 0.10074395357460197 1.8458668848481325E-4 88 0.0 0.0014882301759088067 0.0 0.10076125857664743 1.9612335651511407E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11465 0.0 47.591778 1 GTATCAA 20770 0.0 38.48701 1 ATCAACG 24200 0.0 32.366455 3 TCAACGC 24430 0.0 32.150684 4 CAACGCA 24860 0.0 31.523708 5 AACGCAG 25680 0.0 30.634796 6 TATCAAC 25765 0.0 30.554264 2 ACGCAGA 28830 0.0 27.227428 7 CGCAGAG 29395 0.0 26.674587 8 GCAGAGT 34850 0.0 22.399712 9 GAGTACT 20975 0.0 20.159063 12-13 GTACATG 23280 0.0 19.935455 1 TACATGG 22660 0.0 19.791832 2 GTGGTAT 5700 0.0 19.70835 1 AGAGTAC 31170 0.0 19.423056 10-11 CAGAGTA 34450 0.0 19.008888 10-11 ACATGGG 23210 0.0 18.742113 3 CTTATAC 5740 0.0 18.664244 1 TGGTATC 5625 0.0 17.889196 2 GTACTTT 24420 0.0 17.306437 14-15 >>END_MODULE