##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138836_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8799990 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.088098281929867 32.0 28.0 33.0 18.0 34.0 2 31.4558529043783 33.0 32.0 33.0 27.0 34.0 3 31.797706020120476 33.0 31.0 33.0 29.0 34.0 4 32.23349810624785 33.0 33.0 33.0 31.0 34.0 5 32.64247448008464 33.0 33.0 34.0 31.0 34.0 6 36.54181834297539 38.0 37.0 38.0 34.0 38.0 7 37.2013310242398 38.0 38.0 38.0 36.0 38.0 8 37.34019459113022 38.0 38.0 38.0 37.0 38.0 9 37.388926010143194 38.0 38.0 38.0 37.0 38.0 10-11 37.43692288286691 38.0 38.0 38.0 37.0 38.0 12-13 37.45249699147385 38.0 38.0 38.0 37.0 38.0 14-15 37.47094729653102 38.0 38.0 38.0 37.0 38.0 16-17 37.42196133177424 38.0 38.0 38.0 37.0 38.0 18-19 37.460540750614484 38.0 38.0 38.0 37.0 38.0 20-21 37.493123723823714 38.0 38.0 38.0 37.0 38.0 22-23 37.499470653403606 38.0 38.0 38.0 37.0 38.0 24-25 37.498619347759856 38.0 38.0 38.0 37.0 38.0 26-27 37.47163378514377 38.0 38.0 38.0 37.0 38.0 28-29 37.4474320337018 38.0 38.0 38.0 37.0 38.0 30-31 37.35164904110443 38.0 38.0 38.0 37.0 38.0 32-33 37.414701883181756 38.0 38.0 38.0 37.0 38.0 34-35 37.421220840093596 38.0 38.0 38.0 37.0 38.0 36-37 37.40170481648573 38.0 38.0 38.0 37.0 38.0 38-39 37.383893520446534 38.0 38.0 38.0 37.0 38.0 40-41 37.36700278182183 38.0 38.0 38.0 37.0 38.0 42-43 37.34933514375048 38.0 38.0 38.0 37.0 38.0 44-45 37.315833112818524 38.0 38.0 38.0 37.0 38.0 46-47 37.29011313690237 38.0 38.0 38.0 37.0 38.0 48-49 37.261315595819724 38.0 38.0 38.0 37.0 38.0 50-51 37.22001800284217 38.0 38.0 38.0 37.0 38.0 52-53 37.19997861398315 38.0 38.0 38.0 37.0 38.0 54-55 37.18949595690787 38.0 38.0 38.0 37.0 38.0 56-57 37.17923146879741 38.0 38.0 38.0 37.0 38.0 58-59 37.168679874474975 38.0 38.0 38.0 37.0 38.0 60-61 37.171406241020534 38.0 38.0 38.0 37.0 38.0 62-63 37.177084582600784 38.0 38.0 38.0 36.5 38.0 64-65 37.18282335864806 38.0 38.0 38.0 37.0 38.0 66-67 37.16581463551497 38.0 38.0 38.0 36.0 38.0 68-69 37.16729280436699 38.0 38.0 38.0 36.0 38.0 70-71 37.149688328569894 38.0 38.0 38.0 36.0 38.0 72-73 37.14182078535628 38.0 38.0 38.0 36.0 38.0 74-75 37.13161784314357 38.0 38.0 38.0 36.0 38.0 76-77 37.13478026497767 38.0 38.0 38.0 36.0 38.0 78-79 37.11708165917038 38.0 38.0 38.0 36.0 38.0 80-81 37.11325356226893 38.0 38.0 38.0 36.0 38.0 82-83 37.06388739603127 38.0 38.0 38.0 36.0 38.0 84-85 37.05280316808552 38.0 38.0 38.0 36.0 38.0 86-87 37.04586203295108 38.0 38.0 38.0 36.0 38.0 88-89 37.051290796718796 38.0 38.0 38.0 36.0 38.0 90-91 37.03983490869845 38.0 38.0 38.0 36.0 38.0 92-93 37.02216149415757 38.0 38.0 38.0 36.0 38.0 94-95 36.99591632786204 38.0 38.0 38.0 36.0 38.0 96-97 36.96778170877899 38.0 38.0 38.0 36.0 38.0 98-99 36.97145989157577 38.0 38.0 38.0 35.5 38.0 100 35.44749278806333 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 11.0 19 24.0 20 97.0 21 221.0 22 584.0 23 1515.0 24 3422.0 25 6906.0 26 11766.0 27 19163.0 28 30114.0 29 44228.0 30 61082.0 31 80906.0 32 105578.0 33 142008.0 34 209521.0 35 381569.0 36 1152613.0 37 6548661.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.34709130351285 21.15035357994725 14.798300907160122 23.704254209379783 2 13.756976399285852 21.732976790225596 41.82118825226069 22.68885855822786 3 17.829236169586558 26.47238235497995 30.776819064567118 24.921562410866375 4 12.2514320364794 18.73367132947396 39.947732344694245 29.067164289352394 5 13.103919605116682 38.06279350218938 35.80617616563354 13.027110727060407 6 28.933771515649447 38.820521386956116 19.337771974740882 12.90793512265355 7 25.80427932304469 33.10594671130308 23.64316323086731 17.446610734784926 8 23.811208876373723 36.93374651562104 21.694547380167478 17.56049722783776 9 25.00387217625169 17.452565982962877 21.911233470239246 35.63232837054619 10-11 23.516009625502672 27.32018205545573 29.436652865082507 19.72715545395909 12-13 24.51808746579115 24.73679228462672 29.511457343867136 21.233662905714993 14-15 21.644723459913024 26.258490066465985 27.277673042810274 24.819113430810717 16-17 21.225268437805042 29.36034018220475 27.90221352524264 21.512177854747563 18-19 21.15970018147748 28.536333564015415 29.677562133593334 20.626404120913776 20-21 21.965264844396582 27.665702678768163 29.590559123208514 20.77847335362674 22-23 21.6979407606231 27.552732755041443 29.442792747412632 21.306533736922816 24-25 21.476357517045056 27.671959394744345 29.495135191837168 21.356547896373428 26-27 21.506130528766523 27.801806308240817 29.3860242095519 21.306038953440762 28-29 21.386712027027478 27.910310960531447 29.422196026545635 21.280780985895436 30-31 21.71465877875165 27.69894250334938 29.334069686419873 21.252329031479096 32-33 21.534946583929106 27.767344982356146 29.31235569087884 21.38535274283591 34-35 21.576784016528322 27.876383835521263 29.312401725966286 21.23443042198413 36-37 21.566296463759727 27.772132735464677 29.314618728006646 21.346952072768946 38-39 21.425727488282075 27.866160193653027 29.402591011131708 21.30552130693319 40-41 21.72984547448576 27.75438179652933 29.214304548259882 21.30146818072502 42-43 21.62220315076839 27.815585905405616 29.10782778018729 21.454383163638706 44-45 21.680167639392252 27.905580102186057 28.96554159994799 21.448710658473697 46-47 21.67719777247633 27.87832851303844 28.81260772061436 21.631865993870868 48-49 21.668938891737856 27.94361546447199 28.804797700496316 21.58264794329384 50-51 21.663175695451365 28.08248639996622 28.67449810141705 21.57983980316536 52-53 21.797056789393707 28.01744945772875 28.579801249406383 21.60569250347116 54-55 21.82889097174905 27.91720424266706 28.61233755604674 21.641567229537145 56-57 21.803158405339616 28.03129403771819 28.55934283671065 21.606204720231542 58-59 21.72810390921475 28.11251097093617 28.60154176004748 21.557843359801605 60-61 21.823799589821217 28.0449209863228 28.594827116027925 21.536452307828053 62-63 21.76686548705539 28.090513359932956 28.517933255874304 21.624687897137342 64-65 21.74205049740105 28.03830970080195 28.54102025248323 21.678619549313773 66-67 21.813798760487003 28.06368032730211 28.4029997200699 21.71952119214099 68-69 21.786209949013973 28.04592510935842 28.480350611187294 21.68751433044031 70-71 21.767784388220882 27.86802470600451 28.5593929570082 21.804797948766407 72-73 21.807306931976473 27.900465225091054 28.52092753851104 21.77130030442144 74-75 21.77104425211879 27.979586955997434 28.41617270588718 21.833196085996594 76-77 21.847914000373677 27.93946638730535 28.335036533798153 21.87758307852282 78-79 21.822202126581164 27.969071772794685 28.3375646371124 21.87116146351175 80-81 21.790487655780957 28.016137626795494 28.33061414776923 21.86276056965432 82-83 21.87685392821772 27.95804546738608 28.39855213709156 21.76654846730464 84-85 22.04779467313982 27.91187505244432 28.323942882376357 21.716387392039508 86-87 21.821434700814304 27.97514019060549 28.33518481253362 21.86824029604659 88-89 21.931831516752002 27.955320074411254 28.28006419415151 21.832784214685237 90-91 21.95175947631505 27.961679990910376 28.31776456622494 21.768795966549632 92-93 21.9652223658337 27.968204784498173 28.293222042953975 21.773350806714152 94-95 21.905192588619446 28.079718102040914 28.232200664185058 21.78288864515458 96-97 21.979959285555005 28.177028708719078 28.2518397030579 21.591172302668017 98-99 23.026612270258397 30.09369102842169 28.526412213551115 18.353284487768793 100 21.91564525472701 31.008615768859922 22.52948897110357 24.5462500053095 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1144.0 1 1157.0 2 1764.0 3 2663.0 4 3440.0 5 4528.5 6 5549.5 7 7276.0 8 9647.0 9 11091.0 10 11320.0 11 11594.5 12 12921.5 13 15585.0 14 20621.5 15 26231.0 16 29934.5 17 31594.5 18 31273.5 19 29268.5 20 27107.0 21 26481.5 22 28550.5 23 34287.0 24 43673.0 25 57682.0 26 75531.5 27 95208.0 28 115625.0 29 137718.5 30 160410.5 31 183344.0 32 206454.5 33 228226.0 34 250198.0 35 270329.5 36 291257.5 37 311314.0 38 325707.0 39 335572.0 40 345715.5 41 356397.5 42 362882.5 43 367727.0 44 370363.0 45 371124.5 46 370630.5 47 368035.5 48 363036.5 49 352308.0 50 337759.0 51 320540.0 52 300833.0 53 281764.5 54 261748.0 55 238757.5 56 214255.0 57 189958.5 58 166454.0 59 142977.5 60 118197.5 61 94486.5 62 73446.5 63 55528.0 64 41438.5 65 30371.5 66 22374.5 67 16868.0 68 12577.0 69 9039.0 70 6401.5 71 4504.0 72 3123.0 73 2081.5 74 1342.0 75 845.0 76 528.0 77 317.0 78 189.0 79 113.0 80 69.0 81 47.5 82 38.5 83 33.5 84 29.0 85 20.5 86 14.0 87 9.5 88 5.0 89 2.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007727281508274441 3 0.0 4 0.0032272763946322664 5 0.0025681847365735646 6 0.0 7 0.0 8 0.0 9 3.295458290293512E-4 10-11 3.863640754137221E-4 12-13 1.1363649276874177E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.068542610399681E-4 24-25 0.0015001548739435203 26-27 0.0 28-29 0.0019612263838498633 30-31 0.00300988351295624 32-33 6.441089453850335E-4 34-35 2.285442122206704E-5 36-37 0.001129505357496186 38-39 0.0021667646993230763 40-41 0.001541464586068081 42-43 0.0 44-45 0.0 46-47 0.0013656100490455007 48-49 5.658195553789934E-4 50-51 0.0015953216054405022 52-53 0.002420593077900601 54-55 0.0017073328853761715 56-57 0.0018049173167377203 58-59 0.0018423192815718841 60-61 7.81806833773534E-4 62-63 7.434312074053745E-4 64-65 0.0031327603443369128 66-67 0.0023131565245209803 68-69 7.02550340765656E-5 70-71 0.0028386985809339357 72-73 0.009659223377681863 74-75 0.011456481512584943 76-77 0.0047283886461510355 78-79 0.004135648198795763 80-81 3.145491496766067E-4 82-83 3.373460875342929E-5 84-85 7.479896927020346E-5 86-87 0.0016586273501618667 88-89 0.004464254863342663 90-91 5.646129463239201E-4 92-93 9.773485069384362E-4 94-95 0.002228044940943682 96-97 0.002618316244264161 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 48.0 20-21 233.0 22-23 483.0 24-25 718.0 26-27 1954.0 28-29 5267.0 30-31 15197.0 32-33 19227.0 34-35 26666.0 36-37 41483.0 38-39 48765.0 40-41 47944.0 42-43 54307.0 44-45 63605.0 46-47 64010.0 48-49 59351.0 50-51 54592.0 52-53 53061.0 54-55 56606.0 56-57 57494.0 58-59 56695.0 60-61 55417.0 62-63 54610.0 64-65 57458.0 66-67 60791.0 68-69 60974.0 70-71 60979.0 72-73 57267.0 74-75 57557.0 76-77 59933.0 78-79 60844.0 80-81 60894.0 82-83 58268.0 84-85 57392.0 86-87 59451.0 88-89 61703.0 90-91 62115.0 92-93 63015.0 94-95 75483.0 96-97 264996.0 98-99 602035.0 100-101 6121102.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.52845640027638 #Duplication Level Percentage of deduplicated Percentage of total 1 88.24344054810787 73.70838376433011 2 8.136958507642824 13.59335167873003 3 2.030986042235034 5.0893538723519685 4 0.7408699982376434 2.475349093842634 5 0.35519993287959223 1.4834651053457057 6 0.1808935948587669 0.9065857650749863 7 0.10174380631235856 0.5948952162692006 8 0.05704110434423537 0.3811644317792864 9 0.04107434432186202 0.30877889209727327 >10 0.11049521551290717 1.3335119858425106 >50 8.972422639366108E-4 0.047064770706603386 >100 3.5577160030733927E-4 0.05047057671063031 >500 4.3891682584145006E-5 0.027624846919004974 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.2727298553748358E-5 0.0 2 0.0 2.2727298553748358E-5 0.0 2.2727298553748358E-5 0.0 3 0.0 2.2727298553748358E-5 0.0 2.2727298553748358E-5 0.0 4 0.0 7.954554493811924E-5 0.0 5.681824638437089E-5 0.0 5 0.0 9.090919421499343E-5 0.0 5.681824638437089E-5 0.0 6 1.1363649276874179E-5 1.022728434918676E-4 0.0 7.954554493811924E-5 0.0 7 1.1363649276874179E-5 1.022728434918676E-4 0.0 7.954554493811924E-5 0.0 8 2.2727298553748358E-5 1.1363649276874178E-4 0.0 7.954554493811924E-5 1.1363649276874179E-5 9 2.2727298553748358E-5 1.7045473915311266E-4 0.0 2.1590933626060939E-4 1.1363649276874179E-5 10-11 2.2727298553748358E-5 1.8181838842998686E-4 0.0 2.443184594527948E-4 1.1363649276874179E-5 12-13 3.4090947830622535E-5 1.8181838842998686E-4 0.0 2.8409123192185443E-4 1.1363649276874179E-5 14-15 3.4090947830622535E-5 2.2159116089904646E-4 0.0 2.9545488119872863E-4 2.2727298553748358E-5 16-17 3.4090947830622535E-5 2.2727298553748356E-4 0.0 3.295458290293512E-4 3.4090947830622535E-5 18-19 3.4090947830622535E-5 2.3863663481435773E-4 0.0 3.6931860149841075E-4 3.4090947830622535E-5 20-21 3.4090947830622535E-5 2.613639333681061E-4 0.0 4.204550232443446E-4 3.4090947830622535E-5 22-23 3.4090947830622535E-5 2.9545488119872863E-4 0.0 4.43182321798093E-4 3.977277246905962E-5 24-25 4.5454597107496716E-5 3.125003551140399E-4 0.0 4.659096203518413E-4 4.5454597107496716E-5 26-27 5.11364217459338E-5 3.18182179752477E-4 0.0 5.454551652899606E-4 4.5454597107496716E-5 28-29 5.681824638437089E-5 3.18182179752477E-4 0.0 8.579555204040006E-4 4.5454597107496716E-5 30-31 6.818189566124507E-5 3.693186014984108E-4 0.0 0.0017500019886386234 4.5454597107496716E-5 32-33 7.954554493811924E-5 3.863640754137221E-4 0.0 0.0036306859439613 5.681824638437089E-5 34-35 1.022728434918676E-4 4.4886414643653E-4 0.0 0.005926143097889884 5.681824638437089E-5 36-37 1.0795466813030469E-4 4.886369189055896E-4 0.0 0.009659101885343052 5.681824638437089E-5 38-39 1.4772744059936432E-4 4.886369189055896E-4 0.0 0.014852289604874551 7.386372029968216E-5 40-41 1.4772744059936432E-4 5.568188145668347E-4 0.0 0.020403432276627588 9.090919421499343E-5 42-43 1.4772744059936432E-4 5.79546113120583E-4 0.0 0.025875029403442502 9.090919421499343E-5 44-45 1.4772744059936432E-4 6.647734826971394E-4 0.0 0.031312535582426804 9.090919421499343E-5 46-47 1.590910898762385E-4 7.272735537199473E-4 0.0 0.03750572443832323 9.090919421499343E-5 48-49 1.7045473915311266E-4 7.443190276352587E-4 0.0 0.04352845855506654 9.090919421499343E-5 50-51 1.9318203770686104E-4 7.840918001043183E-4 0.0 0.04939210158193361 9.090919421499343E-5 52-53 1.9318203770686104E-4 7.840918001043183E-4 0.0 0.055630745034937534 9.659101885343052E-5 54-55 1.9318203770686104E-4 7.897736247427554E-4 0.0 0.06168188827487304 1.022728434918676E-4 56-57 1.9318203770686104E-4 8.068190986580667E-4 0.0 0.06618189338851521 1.022728434918676E-4 58-59 1.9318203770686104E-4 8.125009232965038E-4 0.0 0.0704546255166199 1.022728434918676E-4 60-61 2.045456869837352E-4 8.29546397211815E-4 0.0 0.07451144830846398 1.022728434918676E-4 62-63 2.045456869837352E-4 8.29546397211815E-4 0.0 0.07871031671626899 1.2500014204561597E-4 64-65 2.2727298553748356E-4 8.636373450424375E-4 0.0 0.08259668476895997 1.2500014204561597E-4 66-67 2.2727298553748356E-4 8.750009943193117E-4 0.0 0.08651146194484312 1.3068196668405307E-4 68-69 2.2727298553748356E-4 8.86364643596186E-4 0.0 0.09059101203524095 1.3636379132249014E-4 70-71 2.2727298553748356E-4 8.977282928730601E-4 0.0 0.09426147075167131 1.3636379132249014E-4 72-73 2.2727298553748356E-4 8.977282928730601E-4 0.0 0.09714783766799735 1.4772744059936432E-4 74-75 2.2727298553748356E-4 9.318192407036826E-4 0.0 0.0994546584712028 1.4772744059936432E-4 76-77 2.2727298553748356E-4 9.602283638958681E-4 0.0 0.10186375211790014 1.4772744059936432E-4 78-79 2.2727298553748356E-4 9.772738378111792E-4 0.0 0.1032671628035941 1.4772744059936432E-4 80-81 2.2727298553748356E-4 9.772738378111792E-4 0.0 0.10377852702105345 1.4772744059936432E-4 82-83 2.2727298553748356E-4 0.0010113647856418019 0.0 0.10411375467472123 1.4772744059936432E-4 84-85 2.3863663481435773E-4 0.0010625012073877357 0.0 0.10430125488778964 1.4772744059936432E-4 86-87 2.500002840912319E-4 0.0011079558044952325 0.0 0.1043864822573662 1.4772744059936432E-4 88 2.613639333681061E-4 0.0011704558755180404 0.0 0.10439784590664307 1.7045473915311266E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10305 0.0 45.78689 1 GTATCAA 18480 0.0 37.348663 1 TCAACGC 21545 0.0 31.189384 4 ATCAACG 21580 0.0 31.058317 3 CAACGCA 22265 0.0 30.160131 5 AACGCAG 23150 0.0 29.137974 6 TATCAAC 23400 0.0 28.94039 2 ACGCAGA 26590 0.0 25.27058 7 CGCAGAG 26815 0.0 25.042383 8 GTGGTAT 5285 0.0 21.807098 1 GCAGAGT 32370 0.0 20.731487 9 TGGTATC 5435 0.0 19.929743 2 GAGTACT 19770 0.0 18.790863 12-13 AGAGTAC 29145 0.0 18.484268 10-11 TACATGG 22200 0.0 17.994474 2 GTACATG 22660 0.0 17.935116 1 CAGAGTA 31720 0.0 17.844187 10-11 ACATGGG 22475 0.0 16.905924 3 GTACTTT 22500 0.0 16.443748 14-15 AGTACTT 21950 0.0 16.371977 12-13 >>END_MODULE