##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138835_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7249390 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.409107938736913 31.0 31.0 34.0 29.0 34.0 2 31.669414392107473 33.0 31.0 34.0 30.0 34.0 3 31.764269131609694 33.0 31.0 34.0 30.0 34.0 4 35.33122510997477 37.0 35.0 37.0 33.0 37.0 5 35.32998086735574 37.0 35.0 37.0 33.0 37.0 6 35.462590921443045 37.0 35.0 37.0 33.0 37.0 7 35.38235975716577 37.0 35.0 37.0 33.0 37.0 8 35.41166829209078 37.0 35.0 37.0 33.0 37.0 9 37.00601002291227 39.0 37.0 39.0 33.0 39.0 10-11 37.0114039250199 39.0 37.0 39.0 33.0 39.0 12-13 36.9558040055784 39.0 37.0 39.0 33.0 39.0 14-15 38.31685748731962 40.0 38.0 41.0 33.0 41.0 16-17 38.31071469461568 40.0 38.0 41.0 33.0 41.0 18-19 38.32957607467663 40.0 38.0 41.0 33.0 41.0 20-21 38.38847279037307 40.0 38.0 41.0 33.0 41.0 22-23 38.36027782436604 40.0 38.0 41.0 33.0 41.0 24-25 38.39316596800401 40.0 38.0 41.0 33.0 41.0 26-27 38.38439348301203 40.0 38.0 41.0 33.0 41.0 28-29 38.319508506443654 40.0 38.0 41.0 33.0 41.0 30-31 38.25131592722272 40.0 38.0 41.0 33.0 41.0 32-33 38.21803516759789 40.0 38.0 41.0 33.0 41.0 34-35 38.144217621183344 40.0 38.0 41.0 33.0 41.0 36-37 38.06003375405004 40.0 38.0 41.0 32.0 41.0 38-39 37.97487290528494 40.0 38.0 41.0 32.0 41.0 40-41 37.93511662446255 40.0 37.5 41.0 32.0 41.0 42-43 37.77719406426603 40.0 37.0 41.0 32.0 41.0 44-45 37.59046235208458 40.0 37.0 41.0 31.0 41.0 46-47 37.44815836757161 40.0 36.5 41.0 31.0 41.0 48-49 37.31692828753011 39.5 36.0 41.0 31.0 41.0 50-51 37.18604946146694 39.0 36.0 41.0 31.0 41.0 52-53 37.04055886963476 39.0 36.0 40.0 30.0 41.0 54-55 36.86938995145732 39.0 35.0 40.0 30.0 41.0 56-57 36.84875900956317 39.0 35.0 40.0 30.0 41.0 58-59 36.918671079847364 39.0 35.0 40.0 30.0 41.0 60-61 37.214437784402875 39.0 35.0 41.0 31.0 41.0 62-63 37.176025533402324 39.0 35.0 41.0 31.0 41.0 64-65 36.96311812599498 39.0 35.0 41.0 31.0 41.0 66-67 36.74559212204175 38.0 35.0 40.0 31.0 41.0 68-69 36.45427342664729 37.5 35.0 40.0 31.0 41.0 70-71 36.1958377661465 37.0 35.0 40.0 31.0 41.0 72-73 35.886211534997244 36.5 34.5 39.0 30.0 41.0 74-75 35.571257703059935 36.0 34.0 39.0 30.0 41.0 76-77 35.262487169081 36.0 34.0 38.5 30.0 40.0 78-79 34.949403155780864 35.0 34.0 37.0 30.0 39.5 80-81 34.64840244601409 35.0 34.0 37.0 30.0 39.0 82-83 34.3971726458238 35.0 34.0 36.5 30.0 39.0 84-85 34.16424658129255 35.0 34.0 36.0 30.0 37.5 86-87 33.967019820022074 35.0 34.0 36.0 30.0 37.0 88-89 33.821065802429274 35.0 34.0 35.5 30.0 37.0 90-91 33.698061920072035 35.0 34.0 35.0 30.0 36.0 92-93 33.62935534411098 35.0 34.0 35.0 30.0 36.0 94-95 33.604908183576335 35.0 34.0 35.0 30.0 36.0 96-97 33.60563389850515 35.0 34.0 35.0 30.0 36.0 98-99 33.64050944353428 35.0 34.0 35.0 30.0 36.0 100 32.93522575429125 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 32.0 17 207.0 18 1029.0 19 3530.0 20 9133.0 21 18168.0 22 29412.0 23 41074.0 24 53839.0 25 67567.0 26 77575.0 27 81670.0 28 90731.0 29 109118.0 30 127949.0 31 149945.0 32 188869.0 33 244148.0 34 329496.0 35 466095.0 36 737214.0 37 1335252.0 38 1933784.0 39 1108501.0 40 45050.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.85324420399509 20.519781664388315 14.73379139486219 23.893182736754405 2 13.894302607096773 20.883565717388596 42.276046238694825 22.946085436819804 3 17.950941076724504 26.01857249391713 30.29758623805933 25.732900191299034 4 12.230833311948176 18.19998239518721 39.63373159393368 29.935452698930938 5 13.30281070400936 38.045951148433815 35.76508658003581 12.886151567521006 6 29.581182566875242 38.079848131687264 19.419305127969885 12.919664173467607 7 26.37319186339043 32.673102862928666 23.40945303276903 17.544252240911877 8 23.919087286895017 37.20764537653857 21.550509266897347 17.32275806966906 9 24.833413478051796 18.05500493421098 21.679449818232882 35.432131769504345 10-11 23.588244718847665 27.406421934760427 29.30108518808173 19.704248158310183 12-13 24.249750471484912 24.780700801464 29.254867263107236 21.714681463943844 14-15 21.60102618494517 26.44830578854689 26.583365698190143 25.3673023283178 16-17 21.595123649940515 29.50956405578895 27.275372648593017 21.619939645677515 18-19 21.646391278381618 29.09830256717515 28.30667027984498 20.94863587459825 20-21 22.48989099986737 28.24800838999742 28.04089447485989 21.221206135275324 22-23 22.18767479149317 28.11288025997235 27.872947214177497 21.82649773435698 24-25 21.9607385137192 28.238208786686492 27.95194194499605 21.84911075459826 26-27 21.96251878615646 28.377871462328187 27.834348277477105 21.825261474038253 28-29 21.84484014569561 28.447859222313642 27.894038902253932 21.81326172973682 30-31 22.177794902372472 28.21428388148911 27.80809256379732 21.799828652341095 32-33 21.905611148540487 28.316488724889645 27.859306205938715 21.918593920631153 34-35 22.03550187467359 28.280824934327963 27.86997799610923 21.813695194889217 36-37 21.995806542321354 28.12696478950711 27.92602565979781 21.95120300837373 38-39 21.83130472200692 28.17065504097934 28.121751955318526 21.87628828169521 40-41 22.02173478243123 28.028892503445345 28.08714567134774 21.862227042775682 42-43 21.854800701725352 28.031751444149283 28.076809197786623 22.03663865633874 44-45 21.858489727318954 28.092952729018894 28.100760159144162 21.947797384517987 46-47 21.78548521303454 28.072491758338515 28.022111523100307 22.119911505526634 48-49 21.65094329834463 28.073223052347252 28.195818170538516 22.080015478769607 50-51 21.57721470808422 28.230258914287504 28.134882504479762 22.05764387314851 52-53 21.763565730257632 28.136208326446287 28.064624050537223 22.035601892758855 54-55 21.768501477153173 28.025421597693935 28.074493940554962 22.131582984597934 56-57 21.7696094509588 28.07017787903991 28.025986329612145 22.134226340389144 58-59 21.751570826256675 28.121270559668982 28.01340990969998 22.113748704374363 60-61 21.866624268322084 28.037894015778274 28.014327272376054 22.081154443523584 62-63 21.838486387815212 28.12747416685332 27.89775469919521 22.136284746136255 64-65 21.95860088748492 28.09383289802615 27.75986224087641 22.187703973612514 66-67 21.946695625038096 28.133633113657268 27.68238747984172 22.237283781462914 68-69 21.96720911257536 28.08148695670065 27.731563129237202 22.219740801486783 70-71 22.008912483466236 27.956294072438393 27.831268571063738 22.20352487303163 72-73 22.094052646421172 27.938876301131486 27.799658702938185 22.167412349509156 74-75 21.995164660025328 28.10074904639247 27.788535792195713 22.11555050138649 76-77 22.088933126414958 28.02097463280862 27.808167794508055 22.08192444626837 78-79 22.115314115875158 28.012510501321202 27.785244307323005 22.08693107548064 80-81 22.038941660749895 28.110622056565283 27.799854531567288 22.050581751117537 82-83 22.09695374610342 28.05913286210579 27.897427996529423 21.946485395261366 84-85 22.170689541502764 28.12563221521173 27.90053742115085 21.80314082213465 86-87 21.917402883226348 28.157007939869878 28.019582545863337 21.906006631040437 88-89 21.99630703492484 28.161127906692897 27.966251023292738 21.87631403508953 90-91 21.98518955508731 28.20207094643214 27.988449713725593 21.82428978475496 92-93 21.950383898465528 28.19364041971262 28.014273713258337 21.841701968563516 94-95 21.839378461454547 28.302802679238486 28.019678393777436 21.83814046552953 96-97 21.8757880746347 28.432770635825943 28.103098856082177 21.58834243345718 98-99 22.909277978623084 30.378067036137136 28.28058743993419 18.432067545305596 100 21.95210268102288 31.381904390290543 22.0992906671285 24.56670226155808 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1790.0 1 1343.5 2 971.5 3 1073.0 4 1099.5 5 1193.0 6 1419.5 7 1710.0 8 1942.0 9 2158.5 10 2443.5 11 2713.5 12 2992.0 13 3367.0 14 3861.0 15 4493.5 16 5360.5 17 6468.5 18 7993.0 19 10089.5 20 12864.0 21 16785.5 22 22142.0 23 28973.5 24 38032.5 25 49775.5 26 64701.5 27 81551.0 28 98768.5 29 117198.0 30 134995.5 31 151919.0 32 169339.0 33 185969.5 34 202523.0 35 217644.5 36 233873.0 37 249342.0 38 259140.5 39 267386.5 40 278090.0 41 287912.5 42 293794.0 43 298728.5 44 301909.5 45 304312.0 46 305504.5 47 303183.0 48 298528.5 49 291631.0 50 283990.0 51 273116.0 52 258164.5 53 242446.0 54 226490.0 55 208563.0 56 188904.5 57 169375.5 58 150015.5 59 130871.5 60 110419.0 61 90752.5 62 72661.5 63 56672.5 64 43677.0 65 33321.5 66 25679.0 67 20085.0 68 15819.5 69 12139.5 70 9392.0 71 7342.5 72 5713.0 73 4376.5 74 3314.5 75 2526.0 76 1908.0 77 1465.0 78 1112.5 79 834.0 80 633.0 81 486.0 82 393.5 83 292.0 84 207.0 85 154.0 86 122.5 87 102.5 88 70.0 89 43.0 90 28.5 91 23.5 92 19.5 93 12.5 94 7.5 95 7.5 96 8.5 97 5.5 98 2.0 99 5.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011435444913296153 3 0.02172596590885578 4 0.01892573030282548 5 0.010745731709840415 6 0.013863235389460353 7 0.01535301590892475 8 0.002013962554090758 9 5.517705627645912E-5 10-11 2.069139610367217E-5 12-13 0.00301404669910158 14-15 2.0001682900216432E-4 16-17 4.621078463153452E-4 18-19 2.069139610367217E-5 20-21 8.280685425455406E-5 22-23 6.905342463208854E-6 24-25 4.1463893828659165E-5 26-27 0.0024762838753731977 28-29 0.003649389887104358 30-31 0.0027946890367539054 32-33 0.004132921421147054 34-35 0.006012847450719704 36-37 0.0010603167459102294 38-39 0.001357817346410561 40-41 5.5498971582981E-4 42-43 4.933585481839331E-5 44-45 7.078354124111012E-5 46-47 0.004048184350188863 48-49 8.157199247104821E-4 50-51 3.525518711726537E-4 52-53 0.004144714028475415 54-55 2.4732516020669113E-4 56-57 1.9767552616649242E-4 58-59 7.300284674232171E-4 60-61 4.4577678871465536E-5 62-63 0.0 64-65 0.0 66-67 0.0017577428572863466 68-69 0.0 70-71 4.029065367634006E-4 72-73 0.0017131051133136897 74-75 1.2638917501993789E-4 76-77 3.991274116874723E-5 78-79 4.0374152112525026E-5 80-81 0.0031469759563680366 82-83 9.929163691365185E-5 84-85 3.0995465447176604E-4 86-87 0.013821242715530573 88-89 6.876342390966136E-4 90-91 8.885560772095994E-4 92-93 7.95103715979058E-5 94-95 2.0633222843920163E-4 96-97 5.4981921028000646E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2403.0 20-21 4869.0 22-23 5361.0 24-25 6317.0 26-27 7854.0 28-29 9337.0 30-31 11983.0 32-33 12763.0 34-35 16120.0 36-37 22074.0 38-39 26261.0 40-41 23976.0 42-43 27516.0 44-45 34881.0 46-47 40059.0 48-49 38089.0 50-51 37773.0 52-53 37799.0 54-55 42567.0 56-57 48144.0 58-59 50591.0 60-61 50933.0 62-63 51381.0 64-65 55023.0 66-67 57824.0 68-69 59131.0 70-71 61284.0 72-73 61660.0 74-75 64710.0 76-77 70059.0 78-79 74807.0 80-81 74691.0 82-83 73940.0 84-85 75096.0 86-87 76112.0 88-89 76505.0 90-91 79829.0 92-93 83223.0 94-95 100049.0 96-97 251923.0 98-99 475062.0 100-101 4769411.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.23274514772503 #Duplication Level Percentage of deduplicated Percentage of total 1 90.59516764991221 79.02865171220216 2 6.856820903892889 11.96278620865764 3 1.5468031918961036 4.047956658970812 4 0.49965029590656723 1.7434346770321192 5 0.21227416637383426 0.9258629128367234 6 0.10658526795041502 0.5578635309372322 7 0.05839483462925674 0.35657592090102513 8 0.03770482043533733 0.2631275993501213 9 0.02301846532541672 0.180716752748144 >10 0.06264240639241782 0.8180398193656433 >50 6.001673366300948E-4 0.033686065459635255 >100 2.9269160295122734E-4 0.03914675668073683 >500 2.256917396608772E-5 0.0160061082363284 >1k 2.2569172007704626E-5 0.026145276621646594 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.138279220734434E-5 0.0 1.379426406911478E-5 0.0 3 0.0 4.138279220734434E-5 0.0 1.379426406911478E-5 0.0 4 0.0 1.1035411255291825E-4 0.0 2.758852813822956E-5 0.0 5 1.379426406911478E-5 1.3794264069114781E-4 0.0 4.138279220734434E-5 0.0 6 2.758852813822956E-5 1.3794264069114781E-4 0.0 4.138279220734434E-5 0.0 7 2.758852813822956E-5 1.3794264069114781E-4 0.0 4.138279220734434E-5 0.0 8 2.758852813822956E-5 1.5173690476026259E-4 0.0 4.138279220734434E-5 0.0 9 2.758852813822956E-5 2.3450248917495126E-4 0.0 6.897132034557391E-5 0.0 10-11 3.4485660172786954E-5 2.3450248917495126E-4 0.0 1.448397727257052E-4 0.0 12-13 6.207418831101651E-5 2.3450248917495126E-4 0.0 2.3450248917495126E-4 0.0 14-15 8.276558441468868E-5 3.310623376587547E-4 0.0 3.0347380952052517E-4 0.0 16-17 1.4483977272570521E-4 3.724451298660991E-4 0.0 4.0693079003888605E-4 0.0 18-19 1.5173690476026259E-4 4.06930790038886E-4 0.0 6.207418831101651E-4 0.0 20-21 1.5863403679481996E-4 4.552107142807878E-4 0.0 9.104214285615756E-4 0.0 22-23 1.9311969696760692E-4 5.103877705572469E-4 0.0 0.0014001178030151502 0.0 24-25 2.0691396103672172E-4 5.586676947991487E-4 0.0 0.002358819155818628 0.0 26-27 2.207082251058365E-4 5.793590909028207E-4 0.0 0.004338296049736599 0.0 28-29 2.276053571403939E-4 5.862562229373781E-4 0.0 0.014014972294220617 0.0 30-31 2.6209101731318083E-4 6.414332792138373E-4 0.0 0.04696946915533583 0.0 32-33 2.6898814934773823E-4 6.483304112483947E-4 0.0 0.13409404101586478 0.0 34-35 2.8967954545141043E-4 7.724787878704277E-4 0.0 0.25252469518124976 0.0 36-37 3.0347380952052517E-4 8.897300324579034E-4 0.0 0.42366323235472225 0.0 38-39 3.0347380952052517E-4 9.17318560596133E-4 0.0 0.6280735344628996 0.0 40-41 3.241652056241973E-4 0.0010276726731490511 0.0 0.8190689147638629 0.0 42-43 3.310623376587547E-4 0.0010552612012872807 0.0 1.063530862596715 0.0 44-45 3.379594696933121E-4 0.001144923917736527 0.0 1.2577472035578166 0.0 46-47 3.448566017278695E-4 0.0012138952380821007 0.0 1.4417419948437042 0.0 48-49 3.586508657969843E-4 0.001220792370116658 0.0 1.5697320740089855 0.0 50-51 3.724451298660991E-4 0.0013518378787732484 0.0 1.715020160316937 0.0 52-53 3.9313652596977125E-4 0.0013656321428423632 0.0 1.8642465090166207 0.0 54-55 4.0693079003888605E-4 0.0013656321428423632 0.0 2.001402876655829 0.0 56-57 4.1382792207344344E-4 0.001379426406911478 0.0 2.1101223689165574 0.0 58-59 4.1382792207344344E-4 0.0014001178030151502 0.0 2.1621060530610166 0.0 60-61 4.483135822462304E-4 0.0014415005952224946 0.0 2.1811421374763946 0.0 62-63 4.621078463153452E-4 0.0014690891233607242 0.0 2.192087886015237 0.0 64-65 4.690049783499025E-4 0.0016277231601555442 0.0 2.195764057389656 0.0 66-67 4.965935064881321E-4 0.0016484145562592164 0.0 2.1985780872597553 0.0 68-69 5.103877705572469E-4 0.0016897973484665606 0.0 2.2008472436991253 0.0 70-71 5.103877705572469E-4 0.0017242830086393475 0.0 2.203130194402563 0.0 72-73 5.241820346263617E-4 0.0017242830086393475 0.0 2.205302790993449 0.0 74-75 5.241820346263617E-4 0.0017380772727084623 0.0 2.207068456794296 0.0 76-77 5.310791666609191E-4 0.0018277399891577085 0.0 2.208530648785622 0.0 78-79 5.379762986954765E-4 0.0018622256493304953 0.0 2.209868692400326 0.0 80-81 5.379762986954765E-4 0.0018691227813650527 0.0 2.2103790801708834 0.0 82-83 5.379762986954765E-4 0.0018829170454341675 0.0 2.2108135994890605 0.0 84-85 5.448734307300339E-4 0.0018967113095032823 0.0 2.2109515421297514 0.0 86-87 5.517705627645913E-4 0.001924299837641512 0.0 2.21097913065789 0.0 88 5.517705627645913E-4 0.0020553453462981023 0.0 2.2109860277899243 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5540 0.0 33.4832 1 GTATCAA 8765 0.0 31.02974 1 TCAACGC 8950 0.0 28.212154 4 ATCAACG 9225 0.0 27.419523 3 CAACGCA 9325 0.0 26.982653 5 AACGCAG 9895 0.0 25.469376 6 TATCAAC 10690 0.0 24.02637 2 ACGCAGA 11985 0.0 21.027328 7 CGCAGAG 12125 0.0 20.74674 8 GTACATG 19540 0.0 19.362566 1 TACATGG 19305 0.0 18.836733 2 ACATGGG 19480 0.0 18.067825 3 CATGGGG 14315 0.0 16.037977 4 GCAGAGT 15975 0.0 15.800638 9 AGAGTAC 12870 0.0 15.230156 10-11 GTATAAG 3045 0.0 14.91013 1 GTGTAGC 3950 0.0 14.449613 1 CAGAGTA 15365 0.0 14.093237 10-11 GTATAGC 3080 0.0 13.898371 1 GTATAGG 2565 0.0 13.148816 1 >>END_MODULE