##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138834_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6985316 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.95367553880168 34.0 31.0 34.0 31.0 34.0 2 33.06110102964562 34.0 33.0 34.0 31.0 34.0 3 33.1215495476511 34.0 33.0 34.0 31.0 34.0 4 36.489543350651566 37.0 37.0 37.0 35.0 37.0 5 36.451732605940805 37.0 37.0 37.0 35.0 37.0 6 36.48315308856464 37.0 37.0 37.0 35.0 37.0 7 36.441264647154114 37.0 37.0 37.0 35.0 37.0 8 36.42594651408755 37.0 37.0 37.0 35.0 37.0 9 38.21663916134932 39.0 39.0 39.0 37.0 39.0 10-11 38.16878284389711 39.0 39.0 39.0 37.0 39.0 12-13 38.140166386173505 39.0 39.0 39.0 37.0 39.0 14-15 39.60919692108418 41.0 40.0 41.0 37.0 41.0 16-17 39.584375352525214 41.0 40.0 41.0 37.0 41.0 18-19 39.58555189199744 41.0 40.0 41.0 37.0 41.0 20-21 39.55719210826085 41.0 39.5 41.0 37.0 41.0 22-23 39.477532351904046 41.0 39.0 41.0 37.0 41.0 24-25 39.320768330829324 40.5 39.0 41.0 36.0 41.0 26-27 39.33184785820812 40.5 39.0 41.0 36.0 41.0 28-29 39.265406732380164 41.0 39.0 41.0 36.0 41.0 30-31 39.184209181078174 40.5 39.0 41.0 36.0 41.0 32-33 38.992579314464024 40.0 39.0 41.0 35.0 41.0 34-35 38.915611310508766 40.0 38.5 41.0 35.0 41.0 36-37 39.10944740997481 40.5 39.0 41.0 35.0 41.0 38-39 39.179925227925324 41.0 39.0 41.0 35.0 41.0 40-41 39.149670097502664 41.0 39.0 41.0 35.0 41.0 42-43 38.99923957955534 40.0 39.0 41.0 35.0 41.0 44-45 39.01338160315123 40.0 39.0 41.0 35.0 41.0 46-47 38.956026667373706 40.0 38.5 41.0 35.0 41.0 48-49 38.881284199504904 40.0 38.0 41.0 35.0 41.0 50-51 38.79902527142612 40.0 38.0 41.0 35.0 41.0 52-53 38.671814916357405 40.0 38.0 41.0 35.0 41.0 54-55 38.52388553990686 40.0 38.0 41.0 34.5 41.0 56-57 38.3653889524533 40.0 37.0 41.0 34.0 41.0 58-59 38.19004557847116 40.0 37.0 41.0 34.0 41.0 60-61 37.99176031994581 39.5 36.5 41.0 34.0 41.0 62-63 37.74733723512304 39.0 36.0 41.0 34.0 41.0 64-65 37.45821442644292 39.0 35.5 40.5 33.0 41.0 66-67 37.12198832981268 38.0 35.0 40.0 33.0 41.0 68-69 36.779203195871645 37.5 35.0 40.0 32.5 41.0 70-71 36.410204912719635 37.0 35.0 39.5 32.0 41.0 72-73 36.06525935725571 36.5 35.0 39.0 32.0 41.0 74-75 35.72480546133532 36.0 35.0 39.0 32.0 40.0 76-77 34.87915714664163 35.0 34.0 37.0 30.5 39.0 78-79 35.108392587281514 35.0 34.0 37.0 31.0 39.0 80-81 34.90101746799953 35.0 34.0 37.0 31.0 39.0 82-83 34.64735647221657 35.0 34.0 36.0 31.0 38.5 84-85 34.39822444512809 35.0 34.0 36.0 31.0 37.0 86-87 34.18923417289591 35.0 34.0 35.5 31.0 37.0 88-89 33.99920222336662 35.0 34.0 35.0 31.0 36.5 90-91 33.80844419233041 35.0 34.0 35.0 31.0 36.0 92-93 33.68250542819668 35.0 34.0 35.0 30.0 36.0 94-95 33.6111519063693 35.0 34.0 35.0 30.0 36.0 96-97 33.58598872908286 35.0 34.0 35.0 30.0 35.0 98-99 33.61436602343382 35.0 34.0 35.0 30.5 35.0 100-101 32.21184744232334 33.5 31.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 13.0 21 69.0 22 360.0 23 1406.0 24 3808.0 25 8259.0 26 15593.0 27 26435.0 28 40163.0 29 56819.0 30 76001.0 31 100182.0 32 130895.0 33 176949.0 34 259864.0 35 399596.0 36 740099.0 37 1632642.0 38 2253899.0 39 1010180.0 40 52083.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.05180524402905 20.973940191109463 15.65229117766469 24.3219633871968 2 13.639418979232728 21.278591083637295 41.21046852374581 23.871521413384166 3 17.00376904924559 26.13518128600052 30.7465832612297 26.114466403524194 4 11.988877811683823 18.57141466470522 38.53023972000694 30.909467803604016 5 13.409414835348896 37.67778007465947 35.21654567953691 13.696259410454731 6 30.197331087097563 37.74897227269317 18.614834318161126 13.438862322048136 7 26.826435171499067 32.5853307975374 22.6252502571466 17.96298377381693 8 24.890165352163045 36.49488001399516 20.657059502184094 17.957895131657704 9 25.527094419748053 17.119595560719432 21.060212939331244 36.29309708020127 10-11 24.261235998485965 26.95662587061201 28.41789118774297 20.36424694315905 12-13 25.15946307940829 24.378897103581284 28.66742177447663 21.794218042533796 14-15 22.22297858523944 25.746014921300546 26.432439412459118 25.598567081000894 16-17 21.819189386533704 28.93896187494493 27.054057480160697 22.187791258360665 18-19 21.857737001447035 28.053075909522203 28.870555032871813 21.21863205615895 20-21 22.690899543403837 27.06611410523386 28.854618487234234 21.388367864128067 22-23 22.4147769064664 26.99912272318749 28.68634329477396 21.899757075572154 24-25 22.200580914586084 27.198386555199416 28.669301807106862 21.93173072310764 26-27 22.116788190471688 27.306619224575346 28.63069332849172 21.945899256461246 28-29 22.025428909745358 27.31488158876536 28.722610613055295 21.937078888433987 30-31 22.242171385779038 27.208031488655443 28.640012704555645 21.90978442100987 32-33 22.171818370636963 27.290317611985632 28.551369675257178 21.98649434212023 34-35 22.22409291708538 27.367485523886177 28.561309308227536 21.84711225080091 36-37 22.20015497303859 27.311781056170865 28.50630832702055 21.98175564376999 38-39 22.091009280742462 27.369873839907193 28.591234048723894 21.94788283062645 40-41 22.307359612212974 27.26330776735604 28.471450030699124 21.957882589731863 42-43 22.28180574355115 27.33574716017859 28.27172242845817 22.110724667812086 44-45 22.299272238080693 27.4347635925226 28.08805804998421 22.177906119412498 46-47 22.359610702957845 27.498799256746054 27.830892868004693 22.310697172291412 48-49 22.3173370262546 27.606985822618263 27.768493762808028 22.30718338831911 50-51 22.33853846599388 27.693174673986586 27.64972304008389 22.318563819935648 52-53 22.45992679492769 27.606221408411653 27.544387630062488 22.38946416659817 54-55 22.44621507143866 27.55549943817425 27.58531666535348 22.41296882503361 56-57 22.43917532651026 27.67315501525817 27.52885134106639 22.358818317165184 58-59 22.42663147630493 27.710889403050714 27.52685161159065 22.3356275090537 60-61 22.492263102074226 27.6752699873618 27.5206874038423 22.311779506721678 62-63 22.495770166662354 27.733953237148786 27.431580456829035 22.338696139359822 64-65 22.473684318232227 27.68280325744764 27.436297152291328 22.4072152720288 66-67 22.510156635556253 27.67464676234325 27.36342104898057 22.451775553119926 68-69 22.460464042249008 27.684647505738763 27.399871833774654 22.455016618237575 70-71 22.468412471527785 27.58769296984293 27.422849284036943 22.521045274592336 72-73 22.479600285260346 27.595087593671998 27.37441296397372 22.550899157093937 74-75 22.413356541171723 27.69281850266969 27.362915431606165 22.530909524552417 76-77 22.528488572475382 27.61474022128536 27.31140362571956 22.5453675805197 78-79 22.475373967907135 27.64186204412261 27.27288109459095 22.6098828933793 80-81 22.471285523450724 27.700310035465 27.29434566474366 22.534058776340615 82-83 22.468772948661222 27.673412263722376 27.35029511371991 22.507519673896493 84-85 22.54779297581314 27.687021634155162 27.291301665638496 22.4738837243932 86-87 22.452880879645637 27.65042395638418 27.379091527062965 22.51760363690722 88-89 22.46161054461183 27.64657242285022 27.341431861290665 22.550385171247285 90-91 22.500932274579075 27.672231977083793 27.34585042503395 22.480985323303184 92-93 22.496955859564718 27.64665557707629 27.375710676239816 22.480677887119178 94-95 22.376228184608223 27.71579476915354 27.372281907125668 22.535695139112565 96-97 22.38187136087502 27.75986412078339 27.37833561462181 22.479928903719774 98-99 22.621834414723672 28.256858357811687 27.43450114905614 21.686806078408498 100-101 20.389552224373926 32.04696769781321 25.51272370541165 22.05075637240122 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2505.0 1 1999.0 2 2026.0 3 2700.0 4 3430.0 5 4810.0 6 6069.5 7 7675.0 8 9283.5 9 9656.5 10 8913.0 11 8313.5 12 9267.5 13 12418.0 14 19905.5 15 29839.0 16 37468.5 17 40954.0 18 40292.5 19 36888.5 20 32411.5 21 28395.0 22 26397.5 23 27832.5 24 32684.5 25 40865.5 26 51604.5 27 63586.5 28 77487.0 29 92938.5 30 107830.0 31 123313.5 32 139339.5 33 155118.5 34 170026.5 35 182743.5 36 196494.0 37 209049.0 38 220177.5 39 230880.0 40 240099.0 41 249254.5 42 256170.5 43 262692.5 44 268846.5 45 273271.0 46 277713.0 47 281484.5 48 282440.0 49 279823.0 50 275614.5 51 270032.0 52 260814.5 53 249723.0 54 238381.5 55 223673.5 56 206971.0 57 188510.5 58 167303.5 59 144555.5 60 121162.0 61 98683.5 62 78205.0 63 60338.0 64 44581.0 65 32658.0 66 24423.5 67 18367.0 68 13734.0 69 9788.0 70 6829.5 71 4828.5 72 3308.5 73 2175.5 74 1442.5 75 941.0 76 578.5 77 358.0 78 246.0 79 153.0 80 99.5 81 68.5 82 55.5 83 42.5 84 28.0 85 17.5 86 12.5 87 11.5 88 10.0 89 7.0 90 4.0 91 3.0 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.028917804148015636 3 0.0 4 0.0 5 0.0 6 0.0 7 1.4315744627730513E-5 8 6.155770189924121E-4 9 5.726297851092205E-4 10-11 0.0 12-13 0.0 14-15 0.0019183097801158888 16-17 2.147361694159577E-5 18-19 0.0 20-21 2.147403195421851E-4 22-23 0.001832547926676035 24-25 7.445731712817555E-4 26-27 0.01445113300678165 28-29 0.31192849049564114 30-31 0.3124915305933252 32-33 0.33013251184124914 34-35 0.21304471111288267 36-37 0.07130459995853494 38-39 0.06301131479165979 40-41 0.02497981083781601 42-43 0.009479203761523728 44-45 0.012541091046920996 46-47 0.008904054248340385 48-49 0.0058883143147764145 50-51 0.006537277279745534 52-53 0.0023408711404224207 54-55 8.305777582706304E-4 56-57 0.003044256278222633 58-59 0.0036736745868312347 60-61 0.002361644164237436 62-63 0.0016966740809499625 64-65 5.430833961224317E-4 66-67 0.007863861963221067 68-69 0.01133287192544935 70-71 0.011410519678358533 72-73 0.01006871533406976 74-75 0.010151717955710252 76-77 0.008541644962824096 78-79 0.0019823022707396924 80-81 0.0016560823765484683 82-83 0.0014172343969874321 84-85 0.0 86-87 0.0026444789161620334 88-89 0.0 90-91 0.007948350966929602 92-93 0.01671847680670356 94-95 0.0013734580576879314 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 75.0 20-21 307.0 22-23 642.0 24-25 1659.0 26-27 2456.0 28-29 4284.0 30-31 9796.0 32-33 12630.0 34-35 18498.0 36-37 26813.0 38-39 32058.0 40-41 35481.0 42-43 42380.0 44-45 51970.0 46-47 51904.0 48-49 45332.0 50-51 39548.0 52-53 37823.0 54-55 40605.0 56-57 41903.0 58-59 42589.0 60-61 41472.0 62-63 41764.0 64-65 44349.0 66-67 46642.0 68-69 47056.0 70-71 46293.0 72-73 45579.0 74-75 45703.0 76-77 46974.0 78-79 49987.0 80-81 50992.0 82-83 50815.0 84-85 52035.0 86-87 55331.0 88-89 60237.0 90-91 64244.0 92-93 68082.0 94-95 81771.0 96-97 139809.0 98-99 648366.0 100-101 4719062.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.96925967681601 #Duplication Level Percentage of deduplicated Percentage of total 1 90.42493522426919 78.64189672778734 2 6.985416581946849 12.15033017332144 3 1.580719765992627 4.1242208341466595 4 0.4917166791896401 1.7105694223946175 5 0.21654173702776264 0.9416237279218148 6 0.1084521220754597 0.5659200460369443 7 0.05984240741003595 0.3643114908810465 8 0.03460809032597177 0.24078719955825142 9 0.02251904646707288 0.1762618319882233 >10 0.07357344358945546 0.966947145119914 >50 0.0014140827526975682 0.08281599836810853 >100 2.6081895320277345E-4 0.03431540247564698 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.4315744627730513E-5 0.0 4 0.0 2.8631489255461026E-5 0.0 2.8631489255461026E-5 2.8631489255461026E-5 5 0.0 2.8631489255461026E-5 0.0 2.8631489255461026E-5 2.8631489255461026E-5 6 0.0 2.8631489255461026E-5 0.0 2.8631489255461026E-5 2.8631489255461026E-5 7 0.0 2.8631489255461026E-5 0.0 4.294723388319154E-5 2.8631489255461026E-5 8 0.0 4.294723388319154E-5 0.0 4.294723388319154E-5 4.294723388319154E-5 9 0.0 5.726297851092205E-5 0.0 7.157872313865257E-5 4.294723388319154E-5 10-11 0.0 5.726297851092205E-5 0.0 8.589446776638308E-5 4.294723388319154E-5 12-13 0.0 5.726297851092205E-5 0.0 1.002102123941136E-4 4.294723388319154E-5 14-15 0.0 1.2884170164957463E-4 0.0 1.3599957396343986E-4 4.294723388319154E-5 16-17 0.0 1.2884170164957463E-4 0.0 1.5747319090503564E-4 4.294723388319154E-5 18-19 0.0 1.3599957396343988E-4 0.0 1.861046801604967E-4 5.01051061970568E-5 20-21 0.0 1.4315744627730513E-4 0.0 2.0757829710209245E-4 6.442085082478732E-5 22-23 0.0 1.7178893553276614E-4 0.0 2.50525530985284E-4 1.002102123941136E-4 24-25 0.0 2.004204247882272E-4 0.0 2.9347276486847555E-4 1.2884170164957463E-4 26-27 1.4315744627730513E-5 2.147361694159577E-4 0.0 4.008408495764544E-4 1.2884170164957463E-4 28-29 1.4315744627730513E-5 2.147361694159577E-4 0.0 0.0011738910594739022 1.2884170164957463E-4 30-31 1.4315744627730513E-5 2.6484127561301454E-4 0.0 0.0026484127561301448 1.2884170164957463E-4 32-33 1.4315744627730513E-5 2.7199914792687977E-4 0.0 0.005654719127953553 1.5747319090503564E-4 34-35 1.4315744627730513E-5 3.149463818100713E-4 0.0 0.011824805062505404 1.7178893553276617E-4 36-37 1.4315744627730513E-5 3.650514880071281E-4 0.0 0.019111519078020237 1.7178893553276617E-4 38-39 1.4315744627730513E-5 4.008408495764544E-4 0.0 0.031251270522335714 1.8610468016049667E-4 40-41 1.4315744627730513E-5 4.151565942041849E-4 0.0 0.04200239473776132 1.8610468016049667E-4 42-43 1.4315744627730513E-5 4.437880834596459E-4 0.0 0.05359814788622304 1.9326255247436192E-4 44-45 1.4315744627730513E-5 5.153668065982985E-4 0.0 0.06325411763762727 2.004204247882272E-4 46-47 2.1473616941595767E-5 5.869455297369511E-4 0.0 0.07318924440927224 2.004204247882272E-4 48-49 2.8631489255461026E-5 5.869455297369511E-4 0.0 0.08128479799625385 2.004204247882272E-4 50-51 2.8631489255461026E-5 6.298927636201425E-4 0.0 0.08786288265269604 2.004204247882272E-4 52-53 2.8631489255461026E-5 6.298927636201425E-4 0.0 0.09368223284386848 2.2189404172982298E-4 54-55 2.8631489255461026E-5 6.298927636201425E-4 0.0 0.09912937367471994 2.4336765867141873E-4 56-57 2.8631489255461026E-5 6.442085082478731E-4 0.0 0.10379630642336009 2.4336765867141873E-4 58-59 2.8631489255461026E-5 6.585242528756037E-4 0.0 0.10847755491662797 2.4336765867141873E-4 60-61 2.8631489255461026E-5 6.585242528756037E-4 0.0 0.11306575106981559 2.4336765867141873E-4 62-63 2.8631489255461026E-5 6.585242528756037E-4 0.0 0.11743921105358726 2.4336765867141873E-4 64-65 2.8631489255461026E-5 7.730502098974477E-4 0.0 0.1215549876340598 2.4336765867141873E-4 66-67 2.8631489255461026E-5 7.873659545251782E-4 0.0 0.1261718152765029 2.50525530985284E-4 68-69 2.8631489255461026E-5 8.088395714667741E-4 0.0 0.13062401185572708 2.7199914792687977E-4 70-71 2.8631489255461026E-5 8.231553160945045E-4 0.0 0.13466820971306093 2.8631489255461027E-4 72-73 2.8631489255461026E-5 8.303131884083698E-4 0.0 0.13777472629727847 3.149463818100713E-4 74-75 2.8631489255461026E-5 8.446289330361002E-4 0.0 0.1406092437335691 3.149463818100713E-4 76-77 2.8631489255461026E-5 8.732604222915614E-4 0.0 0.14313597266036354 3.4357787106553233E-4 78-79 2.8631489255461026E-5 9.018919115470224E-4 0.0 0.14517596626981516 3.5073574337939756E-4 80-81 2.8631489255461026E-5 9.018919115470224E-4 0.0 0.14612080541524536 3.5789361569326284E-4 82-83 2.8631489255461026E-5 9.018919115470224E-4 0.0 0.14645722541399703 3.8652510494872384E-4 84-85 2.8631489255461026E-5 9.305234008024834E-4 0.0 0.14661469860490206 4.008408495764544E-4 86-87 2.8631489255461026E-5 9.448391454302139E-4 0.0 0.1466862773280407 4.151565942041849E-4 88-89 2.8631489255461026E-5 0.001030733613196597 0.0 0.1467506981788655 4.294723388319154E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9175 0.0 49.916107 1 GTATCAA 16710 0.0 39.370552 1 ATCAACG 20690 0.0 31.239359 3 TCAACGC 20805 0.0 31.087704 4 CAACGCA 21305 0.0 30.358116 5 TATCAAC 21775 0.0 30.032784 2 AACGCAG 21945 0.0 29.592323 6 ACGCAGA 25180 0.0 25.703611 7 CGCAGAG 25855 0.0 25.066393 8 GTGGTAT 4595 0.0 22.561237 1 TGGTATC 4470 0.0 21.822771 2 GTACATG 22610 0.0 21.242317 1 GCAGAGT 30515 0.0 21.210253 9 TACATGG 22420 0.0 20.857136 2 GAGTACT 16620 0.0 20.076641 12-13 ACATGGG 23165 0.0 19.519848 3 AGAGTAC 27385 0.0 19.26691 10-11 CAGAGTA 29500 0.0 18.58973 10-11 GTACTTT 18680 0.0 17.839594 14-15 AGTACTT 18220 0.0 17.569532 12-13 >>END_MODULE