##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138833_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7681056 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.448573998158587 32.0 28.0 33.0 18.0 34.0 2 30.547760620414692 32.0 30.0 33.0 25.0 33.0 3 31.772377652239484 33.0 31.0 33.0 29.0 34.0 4 32.312120625080716 33.0 33.0 33.0 31.0 34.0 5 32.831571726595925 33.0 33.0 34.0 32.0 34.0 6 37.03489975857486 38.0 37.0 38.0 36.0 38.0 7 37.13285855486537 38.0 38.0 38.0 36.0 38.0 8 37.30704345860777 38.0 38.0 38.0 36.0 38.0 9 37.34547411189295 38.0 38.0 38.0 37.0 38.0 10-11 37.40758907368986 38.0 38.0 38.0 37.0 38.0 12-13 37.440819270162855 38.0 38.0 38.0 37.0 38.0 14-15 37.435001580511845 38.0 38.0 38.0 37.0 38.0 16-17 37.391801075268816 38.0 38.0 38.0 37.0 38.0 18-19 37.425710800702404 38.0 38.0 38.0 37.0 38.0 20-21 37.45695853578885 38.0 38.0 38.0 37.0 38.0 22-23 37.46629776870989 38.0 38.0 38.0 37.0 38.0 24-25 37.466223724146026 38.0 38.0 38.0 37.0 38.0 26-27 37.436051679512744 38.0 38.0 38.0 37.0 38.0 28-29 37.40541856463584 38.0 38.0 38.0 37.0 38.0 30-31 37.31336714818174 38.0 38.0 38.0 37.0 38.0 32-33 37.37497876503447 38.0 38.0 38.0 37.0 38.0 34-35 37.3824545811421 38.0 38.0 38.0 37.0 38.0 36-37 37.364532394295566 38.0 38.0 38.0 37.0 38.0 38-39 37.34438214137645 38.0 38.0 38.0 37.0 38.0 40-41 37.334350885342296 38.0 38.0 38.0 37.0 38.0 42-43 37.31707346279062 38.0 38.0 38.0 37.0 38.0 44-45 37.282829932248276 38.0 38.0 38.0 37.0 38.0 46-47 37.25632299687706 38.0 38.0 38.0 37.0 38.0 48-49 37.227032449347675 38.0 38.0 38.0 37.0 38.0 50-51 37.18577103572201 38.0 38.0 38.0 37.0 38.0 52-53 37.167487423978805 38.0 38.0 38.0 37.0 38.0 54-55 37.15787478329083 38.0 38.0 38.0 37.0 38.0 56-57 37.15245276566709 38.0 38.0 38.0 37.0 38.0 58-59 37.1463359596397 38.0 38.0 38.0 36.5 38.0 60-61 37.147277772946 38.0 38.0 38.0 36.0 38.0 62-63 37.160136605639025 38.0 38.0 38.0 36.5 38.0 64-65 37.16459872335578 38.0 38.0 38.0 36.5 38.0 66-67 37.150075273904605 38.0 38.0 38.0 36.0 38.0 68-69 37.152778188007154 38.0 38.0 38.0 36.0 38.0 70-71 37.13663929790522 38.0 38.0 38.0 36.0 38.0 72-73 37.131047205941094 38.0 38.0 38.0 36.0 38.0 74-75 37.12284928376329 38.0 38.0 38.0 36.0 38.0 76-77 37.12604109541972 38.0 38.0 38.0 36.0 38.0 78-79 37.11209564965257 38.0 38.0 38.0 36.0 38.0 80-81 37.11027690064324 38.0 38.0 38.0 36.0 38.0 82-83 37.06302708663624 38.0 38.0 38.0 36.0 38.0 84-85 37.05432418835305 38.0 38.0 38.0 36.0 38.0 86-87 37.04854833298071 38.0 38.0 38.0 36.0 38.0 88-89 37.053997037770074 38.0 38.0 38.0 36.0 38.0 90-91 37.04418446926363 38.0 38.0 38.0 36.0 38.0 92-93 37.028769720476014 38.0 38.0 38.0 36.0 38.0 94-95 37.004218343019815 38.0 38.0 38.0 36.0 38.0 96-97 36.976080043344275 38.0 38.0 38.0 36.0 38.0 98-99 36.9830661594975 38.0 38.0 38.0 36.0 38.0 100 35.53483617958287 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 32.0 20 70.0 21 239.0 22 568.0 23 1388.0 24 3067.0 25 6277.0 26 11067.0 27 17935.0 28 28140.0 29 40861.0 30 56664.0 31 74724.0 32 97198.0 33 128520.0 34 189407.0 35 342108.0 36 1006247.0 37 5676531.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.81412764078273 20.947497323284715 14.883409260393362 23.354965775539196 2 14.410834110527187 20.845582572490606 42.170019851807375 22.573563465174836 3 17.732001953898006 26.463887257168807 30.53418696595885 25.269923822974338 4 12.27794206984043 18.548709855241 39.564465315048004 29.608882759870564 5 13.235166412940838 37.678956127716376 35.9059131766834 13.179964282659384 6 29.283955226989622 38.370414172217984 19.18249261559869 13.163137985193702 7 26.26155830656618 32.938986514354276 23.209790424649945 17.5896647544296 8 24.118181145925767 36.81810157353364 21.376995558943978 17.686721721596612 9 25.08665819819428 17.522343005939693 21.697155814467287 35.69384298139874 10-11 23.80947204304848 27.137105391481814 29.11604319976222 19.937379365707486 12-13 24.799000553765183 24.58264351367947 29.216057406708597 21.402298525846746 14-15 21.9198506038753 26.019924864497803 26.9756788649894 25.084545666637503 16-17 21.450149562768452 29.23280991571992 27.59852942095462 21.718511100557006 18-19 21.391798211079312 28.293967652364465 29.453411093474646 20.860823043081574 20-21 22.244361330028546 27.363995834905396 29.419814768379755 20.9718280666863 22-23 21.941751971702477 27.335121197728533 29.26197082755259 21.461156003016402 24-25 21.699868330466117 27.451115447652004 29.34782728993501 21.50118893194687 26-27 21.720856340758623 27.593258648329783 29.240528556118218 21.445356454793377 28-29 21.615928810484096 27.636546104967287 29.281077845949255 21.46644723859937 30-31 21.93117767139319 27.497355827336843 29.16601467963068 21.40545182163929 32-33 21.772353961752156 27.542507303584717 29.173073992581717 21.512064742081407 34-35 21.789751863715967 27.580001694762764 29.175131762574196 21.45511467894707 36-37 21.75645047374242 27.56180471903942 29.129087367559443 21.55265743965872 38-39 21.63116084866345 27.60698818755078 29.24851834149052 21.513332622295255 40-41 21.882062443007747 27.509808553646064 29.130895085577997 21.477233917768196 42-43 21.816826280314334 27.54410786249533 28.996988715089874 21.64207714210046 44-45 21.913320255918244 27.619741195461035 28.85853675484123 21.608401793779496 46-47 21.911399685181735 27.59657321615927 28.625471768464607 21.866555330194384 48-49 21.8647258254308 27.675129876901238 28.672704118592087 21.78744017907587 50-51 21.835511173945502 27.861166311300206 28.52049175557295 21.782830759181344 52-53 21.97963849834404 27.73713246063237 28.48886246829209 21.794366572731498 54-55 21.96168390664492 27.70978598151798 28.48277939096167 21.845750720875426 56-57 22.030918880929086 27.825027509384952 28.362696630426456 21.781356979259506 58-59 21.92868043468833 27.90487578200316 28.464431233946357 21.70201254936215 60-61 21.982273363134723 27.959511063409842 28.38074854716659 21.677467026288845 62-63 21.91540994667913 28.031163533186525 28.328317957346826 21.72510856278752 64-65 21.89957830616419 27.964550598123992 28.351430941515105 21.78444015419671 66-67 21.99731004750662 27.92517360161651 28.220286902121767 21.85722944875511 68-69 21.991238694490377 27.89263053340746 28.264518967164527 21.851611804937637 70-71 21.949743363103174 27.7192071877999 28.341666632922756 21.989382816174167 72-73 22.037030077542685 27.69094271012227 28.272410890877104 21.999616321457943 74-75 21.963355899168064 27.81242612593693 28.254411552886406 21.9698064220086 76-77 22.073823134179985 27.76640146248994 28.128578716359655 22.031196686970418 78-79 22.02314330480807 27.80592423741069 28.11668284001826 22.054249617762984 80-81 22.022537609677283 27.811528214419322 28.14868438117083 22.017249794732557 82-83 22.076653260582408 27.75539915960691 28.19044672655474 21.977500853255943 84-85 22.21506162639899 27.723627719738708 28.11221028489156 21.949100368970736 86-87 22.056119587791258 27.759310246086432 28.173120160795236 22.011450005327074 88-89 22.147057573398392 27.766953532024107 28.106866191134312 21.979122703443192 90-91 22.15513313943459 27.78498454395133 28.102924493152788 21.95695782346129 92-93 22.181642707435273 27.804651370327 28.05376840314539 21.959937519092342 94-95 22.082282600157402 27.9037250976139 28.04492193443362 21.969070367795073 96-97 22.210273852026894 27.967116450349945 28.0919214500024 21.730688247620762 98-99 23.286956852678315 29.894803899265597 28.330559841843268 18.487679406212816 100 22.1118364722161 30.874991419704696 22.347099137635162 24.666072970444045 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1080.0 1 1017.5 2 1495.0 3 2285.5 4 2909.5 5 3822.5 6 4733.0 7 6207.0 8 8389.0 9 9963.0 10 10283.5 11 10426.5 12 11564.0 13 13867.0 14 18158.5 15 23057.0 16 26564.5 17 28372.0 18 27895.5 19 25688.0 20 23635.0 21 22719.0 22 24011.0 23 28541.0 24 36265.5 25 47230.5 26 61700.0 27 78136.5 28 94372.5 29 112456.0 30 131224.0 31 148940.5 32 167681.0 33 186128.5 34 204338.0 35 221248.0 36 237664.0 37 253776.0 38 265341.0 39 273954.0 40 283888.0 41 293691.5 42 301206.5 43 310097.5 44 315858.0 45 318705.0 46 319878.0 47 316600.0 48 311456.0 49 304154.0 50 295327.0 51 282771.0 52 267895.5 53 252104.5 54 235408.0 55 217095.0 56 197740.5 57 176924.0 58 154767.0 59 133212.5 60 110049.5 61 87738.0 62 68347.0 63 52072.5 64 39004.0 65 28539.5 66 20783.0 67 15703.5 68 11954.5 69 8530.0 70 5925.5 71 4257.5 72 3014.0 73 2112.5 74 1438.5 75 924.5 76 564.5 77 307.0 78 178.0 79 120.0 80 80.5 81 54.0 82 32.0 83 17.5 84 14.5 85 12.0 86 10.0 87 8.0 88 5.5 89 4.0 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008423320960034663 3 0.0 4 0.0037755225323184726 5 0.002512675340474018 6 0.0 7 0.0 8 0.0 9 2.2132373465315187E-4 10-11 5.402902934179884E-4 12-13 3.254760803722822E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.137242603555689E-4 24-25 0.0016210226191897567 26-27 0.0 28-29 0.002038373122962807 30-31 0.003212854127559563 32-33 6.982938527560614E-4 34-35 1.961530592783045E-5 36-37 0.001212961006319658 38-39 0.0021659857417569597 40-41 0.0017062663756931377 42-43 0.0 44-45 0.0 46-47 0.001620529976509712 48-49 4.939868937833441E-4 50-51 0.0018991544882534233 52-53 0.0028196180813621326 54-55 0.0021192156507653707 56-57 0.001986047840916876 58-59 0.0021857429002511168 60-61 9.663404707380551E-4 62-63 7.324919114228522E-4 64-65 0.0035492349733821545 66-67 0.002573948616855556 68-69 1.2923745378953292E-4 70-71 0.0031742370533246514 72-73 0.010115330055791617 74-75 0.012012655578181793 76-77 0.0050163603428682296 78-79 0.004523134608040306 80-81 3.440433530525022E-4 82-83 1.0543310337369363E-4 84-85 5.3066380128429733E-5 86-87 0.0016637291925097996 88-89 0.004304063320149834 90-91 6.426429193332154E-4 92-93 0.0011388969019040015 94-95 0.0026261906216531305 96-97 0.002332823721489192 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 195.0 22-23 391.0 24-25 524.0 26-27 1482.0 28-29 3718.0 30-31 10087.0 32-33 13397.0 34-35 18688.0 36-37 29109.0 38-39 34683.0 40-41 34201.0 42-43 39419.0 44-45 47139.0 46-47 47756.0 48-49 44636.0 50-51 40018.0 52-53 38663.0 54-55 41070.0 56-57 42284.0 58-59 42656.0 60-61 41771.0 62-63 40782.0 64-65 43727.0 66-67 48127.0 68-69 49148.0 70-71 50180.0 72-73 44367.0 74-75 43784.0 76-77 45288.0 78-79 46636.0 80-81 46728.0 82-83 44035.0 84-85 43505.0 86-87 45715.0 88-89 47254.0 90-91 48056.0 92-93 48988.0 94-95 61002.0 96-97 232699.0 98-99 543166.0 100-101 5535940.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.81327897526374 #Duplication Level Percentage of deduplicated Percentage of total 1 88.37012498933031 74.06589938809665 2 8.053747005954543 13.500218892125263 3 2.065888096025626 5.194465659716166 4 0.7352168916914421 2.464837538026444 5 0.3188851124569726 1.3363403445707296 6 0.17124750188196255 0.8611688789429957 7 0.09593295105031092 0.5628318632510021 8 0.05235024345509374 0.3510116447299797 9 0.03901134331383376 0.2942701740325925 >10 0.09581638814652815 1.1899557586996443 >50 0.0013665262781778933 0.07506191951806519 >100 3.3859955291958737E-4 0.0502008746823379 >500 4.956725978900405E-5 0.027585178646093705 >1k 2.4783602531875254E-5 0.026151884962072866 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.603808642978257E-5 0.0 0.0 0.0 3 0.0 2.603808642978257E-5 0.0 0.0 0.0 4 0.0 3.905712964467386E-5 0.0 0.0 0.0 5 0.0 3.905712964467386E-5 0.0 0.0 0.0 6 1.0415234571913029E-4 3.905712964467386E-5 0.0 0.0 0.0 7 1.0415234571913029E-4 5.207617285956514E-5 0.0 0.0 0.0 8 1.0415234571913029E-4 6.509521607445642E-5 0.0 0.0 0.0 9 1.0415234571913029E-4 1.9528564822336928E-4 0.0 0.0 0.0 10-11 1.0415234571913029E-4 1.9528564822336928E-4 0.0 1.3019043214891286E-5 0.0 12-13 1.0415234571913029E-4 1.9528564822336928E-4 0.0 2.603808642978257E-5 0.0 14-15 1.1066186732657592E-4 2.7990942912016264E-4 0.0 2.603808642978257E-5 1.3019043214891286E-5 16-17 1.6924756179358672E-4 2.994379939424996E-4 0.0 2.603808642978257E-5 2.603808642978257E-5 18-19 1.6924756179358672E-4 3.450046451946191E-4 0.0 3.905712964467386E-5 3.905712964467386E-5 20-21 1.7575708340103236E-4 3.775522532318473E-4 0.0 5.207617285956514E-5 3.905712964467386E-5 22-23 1.82266605008478E-4 4.035903396616299E-4 0.0 5.858569446701078E-5 4.55666512521195E-5 24-25 1.8877612661592362E-4 4.3613794769885804E-4 0.0 6.509521607445642E-5 5.207617285956514E-5 26-27 1.9528564822336928E-4 4.6868555573608626E-4 0.0 9.1133302504239E-5 5.207617285956514E-5 28-29 1.9528564822336928E-4 4.7519507734353195E-4 0.0 3.450046451946191E-4 5.207617285956514E-5 30-31 2.0179516983081494E-4 5.402902934179884E-4 0.0 0.0010675615436210855 5.207617285956514E-5 32-33 2.148142130457062E-4 5.598188582403253E-4 0.0 0.002388994429932551 6.509521607445642E-5 34-35 2.278332562605975E-4 6.444426391371186E-4 0.0 0.004087979569475863 6.509521607445642E-5 36-37 2.3434277786804313E-4 7.420854632488032E-4 0.0 0.006457445434586078 7.160473768190207E-5 38-39 2.3434277786804313E-4 7.616140280711402E-4 0.0 0.010050701361896073 8.462378089679336E-5 40-41 2.5387134269038006E-4 8.332187657530423E-4 0.0 0.014158209496194275 9.1133302504239E-5 42-43 2.73399907512717E-4 8.462378089679336E-4 0.0 0.01814203671995101 9.1133302504239E-5 44-45 2.929284723350539E-4 9.373711114721725E-4 0.0 0.02285493036374165 9.1133302504239E-5 46-47 3.1245703715739086E-4 0.0010350139355838571 0.0 0.02805603812809072 9.764282411168464E-5 48-49 3.254760803722822E-4 0.0010675615436210855 0.0 0.03334827919494403 1.1717138893402157E-4 50-51 3.710427316244016E-4 0.0012433186270221178 0.0 0.038315044181425055 1.1717138893402157E-4 52-53 3.9057129644673856E-4 0.0012628471918444547 0.0 0.043548699553811354 1.236809105414672E-4 54-55 3.9057129644673856E-4 0.0012888852782742372 0.0 0.04835272650010623 1.3019043214891284E-4 56-57 3.9057129644673856E-4 0.0013279424079189112 0.0 0.05208919190278004 1.3019043214891284E-4 58-59 3.9057129644673856E-4 0.0013279424079189112 0.0 0.055793109697416604 1.3019043214891284E-4 60-61 4.035903396616299E-4 0.0013604900159561394 0.0 0.05969882266188399 1.3019043214891284E-4 62-63 4.1660938287652115E-4 0.0013930376239933676 0.0 0.0632660405027642 1.3019043214891284E-4 64-65 4.1660938287652115E-4 0.001549266142572063 0.0 0.06689184403811142 1.3019043214891284E-4 66-67 4.231189044839668E-4 0.001588323272216737 0.0 0.07055019518149588 1.366999537563585E-4 68-69 4.296284260914124E-4 0.0016859660963284215 0.0 0.07375938933396659 1.4320947536380414E-4 70-71 4.7519507734353195E-4 0.0017250232259730953 0.0 0.07661055979802778 1.4320947536380414E-4 72-73 5.402902934179884E-4 0.001731532747580541 0.0 0.07906464944403477 1.5622851857869543E-4 74-75 5.46799815025434E-4 0.001751061312402878 0.0 0.0811932630096695 1.5622851857869543E-4 76-77 5.46799815025434E-4 0.0017901184420475518 0.0 0.08309404331904363 1.5622851857869543E-4 78-79 5.46799815025434E-4 0.0018096470068698887 0.0 0.08432434290285086 1.5622851857869543E-4 80-81 5.46799815025434E-4 0.0018096470068698887 0.0 0.08480604750180185 1.5622851857869543E-4 82-83 5.533093366328797E-4 0.00182266605008478 0.0 0.0851705807118188 1.5622851857869543E-4 84-85 5.728379014552165E-4 0.0018356850932996713 0.0 0.0853007711439677 1.5622851857869543E-4 86-87 5.858569446701078E-4 0.0018617231797294538 0.0 0.08532029970879004 1.5622851857869543E-4 88 5.988759878849992E-4 0.0019268183958039103 0.0 0.08532680923039748 1.5622851857869543E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10005 0.0 51.177727 1 GTATCAA 17690 0.0 37.948166 1 ATCAACG 20980 0.0 31.450882 3 TCAACGC 21030 0.0 31.41783 4 CAACGCA 21515 0.0 30.666618 5 TATCAAC 22120 0.0 30.149887 2 AACGCAG 22125 0.0 29.840559 6 ACGCAGA 25310 0.0 26.085434 7 CGCAGAG 25610 0.0 25.762737 8 GTGGTAT 4895 0.0 22.856762 1 GCAGAGT 30495 0.0 21.66457 9 TGGTATC 4840 0.0 21.39409 2 GAGTACT 18160 0.0 20.0015 12-13 CAGAGTA 29630 0.0 19.631918 10-11 GTACATG 21325 0.0 19.628475 1 TACATGG 20805 0.0 19.127878 2 AGAGTAC 27430 0.0 19.00747 10-11 ACATGGG 21090 0.0 18.139711 3 GTACTTT 20235 0.0 17.885756 14-15 CTTATAC 4295 0.0 17.162214 1 >>END_MODULE