##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138830_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15644069 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.258570324638686 31.0 31.0 34.0 28.0 34.0 2 31.587738906035252 31.0 31.0 34.0 29.0 34.0 3 31.69020809100241 33.0 31.0 34.0 29.0 34.0 4 35.298776999769046 37.0 35.0 37.0 33.0 37.0 5 35.26437546395378 37.0 35.0 37.0 32.0 37.0 6 35.42067322766219 37.0 35.0 37.0 33.0 37.0 7 35.34603637966568 37.0 35.0 37.0 32.0 37.0 8 35.38910260495527 37.0 35.0 37.0 33.0 37.0 9 36.993403889998184 39.0 37.0 39.0 33.0 39.0 10-11 36.99873840367235 39.0 37.0 39.0 33.0 39.0 12-13 36.94337710348887 39.0 37.0 39.0 33.0 39.0 14-15 38.29767664665759 40.0 38.0 41.0 33.0 41.0 16-17 38.289325973952174 40.0 38.0 41.0 33.0 41.0 18-19 38.29974567358403 40.0 38.0 41.0 33.0 41.0 20-21 38.35959338032678 40.0 38.0 41.0 33.0 41.0 22-23 38.331514489752294 40.0 38.0 41.0 33.0 41.0 24-25 38.360548713272486 40.0 38.0 41.0 33.0 41.0 26-27 38.34919241345135 40.0 38.0 41.0 33.0 41.0 28-29 38.28966439027023 40.0 38.0 41.0 33.0 41.0 30-31 38.22416062041415 40.0 38.0 41.0 33.0 41.0 32-33 38.1941083592923 40.0 38.0 41.0 33.0 41.0 34-35 38.125909075346506 40.0 38.0 41.0 32.5 41.0 36-37 38.038294215251895 40.0 38.0 41.0 32.0 41.0 38-39 37.95286915654492 40.0 38.0 41.0 32.0 41.0 40-41 37.91428426488476 40.0 37.0 41.0 32.0 41.0 42-43 37.75135033759372 40.0 37.0 41.0 31.5 41.0 44-45 37.53764625398313 40.0 37.0 41.0 31.0 41.0 46-47 37.389324534497234 40.0 36.5 41.0 31.0 41.0 48-49 37.26162037623568 39.0 36.0 41.0 31.0 41.0 50-51 37.133979955450826 39.0 36.0 40.0 30.5 41.0 52-53 36.995716208616464 39.0 36.0 40.0 30.0 41.0 54-55 36.831819599951224 39.0 35.0 40.0 30.0 41.0 56-57 36.81922460635215 39.0 35.0 40.0 30.0 41.0 58-59 36.89676072228313 39.0 35.0 40.0 30.0 41.0 60-61 37.199841367744035 39.0 35.5 41.0 31.0 41.0 62-63 37.173105466132526 39.0 35.0 41.0 31.0 41.0 64-65 36.968665361869235 39.0 35.0 41.0 31.0 41.0 66-67 36.76043350488313 38.0 35.0 40.0 31.0 41.0 68-69 36.48280959087354 38.0 35.0 40.0 31.0 41.0 70-71 36.23447304763593 37.0 35.0 40.0 31.0 41.0 72-73 35.93462786690358 37.0 34.5 39.0 30.0 41.0 74-75 35.62493606660996 36.0 34.0 39.0 30.0 41.0 76-77 35.31477454765168 36.0 34.0 39.0 30.0 40.0 78-79 34.9986393782394 35.0 34.0 37.5 30.0 39.5 80-81 34.68766319787291 35.0 34.0 37.0 30.0 39.0 82-83 34.42411231832305 35.0 34.0 37.0 30.0 39.0 84-85 34.18203464975316 35.0 34.0 36.0 30.0 37.5 86-87 33.97294734828009 35.0 34.0 36.0 30.0 37.0 88-89 33.815896415900966 35.0 34.0 35.5 30.0 37.0 90-91 33.67998741865402 35.0 34.0 35.0 29.5 36.0 92-93 33.600358065105766 35.0 34.0 35.0 29.5 36.0 94-95 33.56947139438974 35.0 34.0 35.0 30.0 36.0 96-97 33.56942968547118 35.0 34.0 35.0 30.0 36.0 98-99 33.60648223963002 35.0 34.0 35.0 30.0 36.0 100 32.88616610511872 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 4.0 14 7.0 15 23.0 16 55.0 17 427.0 18 2394.0 19 8368.0 20 21016.0 21 41013.0 22 64610.0 23 89870.0 24 117641.0 25 146197.0 26 167204.0 27 175704.0 28 194548.0 29 233355.0 30 274910.0 31 324442.0 32 408361.0 33 532040.0 34 723249.0 35 1023427.0 36 1616149.0 37 2907130.0 38 4152782.0 39 2332214.0 40 86926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.40450090062886 20.86622732231621 14.807682067881444 23.92158970917349 2 13.762426071042505 21.134055648008374 42.33570403369396 22.767814247255167 3 17.82494213945314 26.115475067713096 30.527709797749104 25.531872995084658 4 12.027570370674411 18.389504754097512 40.04373338795851 29.539191487269566 5 13.16320977256758 38.15115752992347 35.94536538289053 12.740267314618418 6 29.204116107111766 38.347187071722324 19.640200239523836 12.808496581642077 7 26.113160517456684 32.78889186740254 23.708562334540385 17.389385280600386 8 23.61477586052379 37.27682672212468 21.798457227681332 17.309940189670197 9 24.662066495040225 18.121920315539693 22.00297314238368 35.2130400470364 10-11 23.400857047366767 27.476714084346206 29.537199088254557 19.585229780032478 12-13 24.116815388556546 24.869475946111415 29.442766350205492 21.570942315126548 14-15 21.449115075360307 26.591688824194048 26.78620055019022 25.172995550255422 16-17 21.446796354525347 29.593233469052045 27.48621779783474 21.473752378587864 18-19 21.418771729883286 29.289950624732047 28.4628766931259 20.828400952258768 20-21 22.264540401727476 28.38987596901555 28.21630786747938 21.129275761777595 22-23 21.948545740808353 28.27810387925444 28.04759006789872 21.725760312038485 24-25 21.796723673308165 28.367725521574084 28.091018889374386 21.744531915743366 26-27 21.80567227985192 28.49450316057247 28.001397752855816 21.69842680671979 28-29 21.69485693449775 28.64791352644972 28.002003533305775 21.65522600574676 30-31 21.97542461672696 28.376138197228684 27.979483113867786 21.668954072176565 32-33 21.774612514635717 28.438648348015743 28.01201384509582 21.77472529225272 34-35 21.934426296257122 28.457103333181127 27.98626149010792 21.622208880453826 36-37 21.883967512265603 28.353022353358032 28.051616481273822 21.711393653102544 38-39 21.7102643134157 28.451738500560992 28.187449856931522 21.65054732909179 40-41 21.934673771911267 28.331189622526015 28.11075310507106 21.62338350049166 42-43 21.812438665055065 28.367044455057393 28.01338944833845 21.80712743154909 44-45 21.876333873678558 28.396003434341427 27.962079699263075 21.765582992716944 46-47 21.848181513845873 28.356505192933056 27.950479474755607 21.84483381846546 48-49 21.7487290209225 28.308126368580606 28.150831386567788 21.792313223929106 50-51 21.683609909046528 28.42658847782816 28.150475794914424 21.739325818210883 52-53 21.831005589637527 28.350835474737607 28.03419700882982 21.783961926795044 54-55 21.827372224506522 28.244418545541784 28.077595241140678 21.850613988811016 56-57 21.85166189301453 28.306624909527063 28.05033259986942 21.79138059758899 58-59 21.824332695472553 28.321520296640802 28.121936209183772 21.732210798702873 60-61 21.842679247321918 28.31357310599514 28.11698369149744 21.726763955185504 62-63 21.77880913061392 28.387916064359274 28.08406412353481 21.749210681492 64-65 21.787041701561467 28.373846956299765 28.041766092341895 21.79734524979687 66-67 21.80868709354761 28.321934579184223 28.005550526766864 21.863827800501305 68-69 21.81990518026724 28.320944753241147 28.06695425900676 21.792195807484852 70-71 21.804122883311265 28.11915710406313 28.147409564773422 21.92931044785218 72-73 21.800982896955016 28.199600429062126 28.136379703001403 21.86303697098145 74-75 21.695454570682344 28.310145831339728 28.10155832722789 21.89284127075003 76-77 21.78802142968209 28.27811923952479 27.992315456517613 21.94154387427551 78-79 21.763300244652687 28.292387879983334 28.019639635063697 21.924672240300282 80-81 21.748375197486496 28.289249951427607 28.06305043196355 21.89932441912234 82-83 21.794823886835097 28.29293733139989 28.13205628598366 21.780182495781357 84-85 21.88742807039774 28.275586289320277 28.122485836995807 21.714499803286177 86-87 21.687466944692165 28.309853856418332 28.17002970670438 21.832649492185116 88-89 21.77174213714006 28.30973102253379 28.10443535703051 21.814091483295638 90-91 21.772492186878612 28.34303951599709 28.103456526195377 21.781011770928917 92-93 21.72260309931591 28.352947155577713 28.166987055180126 21.757462689926253 94-95 21.64076293122995 28.416175733959452 28.18765351003937 21.755407824771222 96-97 21.670025521313736 28.572152286172553 28.26520412522483 21.49261806728888 98-99 22.721997254533537 30.510367770095257 28.48565857194696 18.281976403424245 100 21.739728210341543 31.541904590418635 22.21602239831786 24.502344800921954 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3234.0 1 2518.5 2 2121.0 3 2410.0 4 2438.0 5 2762.0 6 3361.5 7 3966.0 8 4336.0 9 4696.5 10 5256.0 11 5728.0 12 6195.0 13 6985.0 14 8131.0 15 9662.5 16 11641.5 17 14159.0 18 17561.0 19 22518.5 20 29545.0 21 38773.0 22 51289.5 23 68050.0 24 89135.0 25 115310.5 26 147772.5 27 184660.5 28 223606.5 29 264349.5 30 304321.0 31 343181.5 32 384523.5 33 425015.5 34 462443.0 35 496497.5 36 531485.5 37 563547.5 38 585404.0 39 602896.0 40 621532.0 41 638919.0 42 650745.0 43 660117.5 44 666393.0 45 671584.5 46 674494.0 47 675611.5 48 669777.5 49 646389.0 50 617665.5 51 586485.5 52 549751.5 53 514573.5 54 477858.5 55 437180.5 56 396576.5 57 355339.0 58 313647.5 59 271647.5 60 227351.5 61 185161.5 62 148026.5 63 115438.0 64 87576.0 65 66039.5 66 49962.0 67 38768.0 68 30740.5 69 23594.5 70 18044.5 71 13873.5 72 10756.5 73 8305.0 74 6333.0 75 4703.0 76 3481.0 77 2644.5 78 2050.0 79 1618.5 80 1245.5 81 911.0 82 684.5 83 461.5 84 314.0 85 240.0 86 193.0 87 150.0 88 97.5 89 65.0 90 49.0 91 41.5 92 39.0 93 25.0 94 12.0 95 10.5 96 9.5 97 8.0 98 9.5 99 20.0 100 58.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011863921080890145 3 0.022027517265488922 4 0.018729142654637997 5 0.011199132399633369 6 0.014075621885840571 7 0.015417983646070596 8 0.0018089922768814175 9 9.588298287357337E-5 10-11 6.072588915326313E-5 12-13 0.0031737267331152785 14-15 1.598049714559556E-4 16-17 4.506500195057948E-4 18-19 1.278439771647645E-5 20-21 6.075855197404855E-5 22-23 6.40031643164438E-6 24-25 9.608201868577478E-6 26-27 0.0025037102035904294 28-29 0.0038355182146192304 30-31 0.0027197363746029857 32-33 0.004198373299505765 34-35 0.006142695891896824 36-37 0.0011545871927545373 38-39 0.0013428888786180344 40-41 6.68471539824192E-4 42-43 6.260134828807058E-5 44-45 8.618996148170621E-5 46-47 0.004195290681077908 48-49 7.426969949168944E-4 50-51 3.58692085482821E-4 52-53 0.004255144457725447 54-55 2.0243007353323885E-4 56-57 1.6249233088057498E-4 58-59 5.574456835378067E-4 60-61 3.861852140073449E-5 62-63 3.537522179379684E-6 64-65 0.0 66-67 0.001855126619042882 68-69 0.0 70-71 3.951889261037325E-4 72-73 0.0017647146559773691 74-75 1.676206641562803E-4 76-77 2.25569218283107E-5 78-79 1.1388551408148828E-5 80-81 0.0031019415316612753 82-83 1.1229829773593466E-4 84-85 3.4806102049379377E-4 86-87 0.013465310231581209 88-89 6.231330723444316E-4 90-91 8.648838796395261E-4 92-93 3.273584148258007E-5 94-95 1.8255522969908052E-4 96-97 5.50192192713534E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 5690.0 20-21 11065.0 22-23 12361.0 24-25 13907.0 26-27 18121.0 28-29 21764.0 30-31 33998.0 32-33 41295.0 34-35 52358.0 36-37 72863.0 38-39 81701.0 40-41 82540.0 42-43 88781.0 44-45 100731.0 46-47 102994.0 48-49 102637.0 50-51 100135.0 52-53 100995.0 54-55 110020.0 56-57 111533.0 58-59 109474.0 60-61 108263.0 62-63 108482.0 64-65 114720.0 66-67 121251.0 68-69 121596.0 70-71 121688.0 72-73 119759.0 74-75 122376.0 76-77 127176.0 78-79 131298.0 80-81 128958.0 82-83 126451.0 84-85 129110.0 86-87 135527.0 88-89 142940.0 90-91 151506.0 92-93 161259.0 94-95 199632.0 96-97 534496.0 98-99 1027199.0 100-101 1.0335419E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.9737606893555 #Duplication Level Percentage of deduplicated Percentage of total 1 88.53931246190005 73.46439723813766 2 7.617064677023828 12.640330033334363 3 2.0943664524777432 5.213323824711082 4 0.7899260874069178 2.621725525551221 5 0.3810820876172531 1.5809906970476981 6 0.20084240701905443 0.9998789889763894 7 0.11097941519813966 0.6445865606666544 8 0.07412939688189298 0.4920635869539555 9 0.04802264855444534 0.35861577739430145 >10 0.1415319357685309 1.7347427229902628 >50 0.0022796891454581504 0.12611720111937783 >100 3.6913535905218944E-4 0.049368757675594316 >500 6.688400475951481E-5 0.035634644049469505 >1k 2.672164283200344E-5 0.03822444139203087 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.392198858238224E-6 0.0 2 0.0 1.917659657471467E-5 0.0 1.2784397716476448E-5 0.0 3 0.0 1.917659657471467E-5 0.0 2.5568795432952896E-5 0.0 4 0.0 4.474539200766757E-5 0.0 2.5568795432952896E-5 0.0 5 0.0 5.113759086590579E-5 0.0 3.196099429119112E-5 0.0 6 0.0 5.113759086590579E-5 0.0 3.196099429119112E-5 0.0 7 0.0 5.113759086590579E-5 0.0 3.196099429119112E-5 0.0 8 0.0 6.392198858238224E-5 0.0 3.196099429119112E-5 6.392198858238224E-6 9 0.0 1.7898156803067028E-4 0.0 5.113759086590579E-5 6.392198858238224E-6 10-11 0.0 1.7898156803067028E-4 0.0 7.031418744062046E-5 6.392198858238224E-6 12-13 0.0 1.853737668889085E-4 0.0 1.1825567887740714E-4 6.392198858238224E-6 14-15 0.0 2.4929575547129074E-4 0.0 2.620801531877672E-4 1.598049714559556E-5 16-17 3.196099429119112E-6 2.4929575547129074E-4 0.0 3.8672803092341257E-4 2.5568795432952896E-5 18-19 6.392198858238224E-6 2.5888405375864806E-4 0.0 5.145720080881771E-4 3.196099429119112E-5 20-21 6.392198858238224E-6 2.812567497624819E-4 0.0 7.031418744062047E-4 3.196099429119112E-5 22-23 6.392198858238224E-6 3.260021417701494E-4 0.0 0.0010067713201725203 5.113759086590579E-5 24-25 1.2784397716476448E-5 3.611592354904597E-4 0.0 0.0014158720470997667 7.031418744062047E-5 26-27 1.2784397716476448E-5 3.70747533777817E-4 0.0 0.001940032353475301 7.031418744062047E-5 28-29 1.2784397716476448E-5 3.70747533777817E-4 0.0 0.00464393247051007 7.031418744062047E-5 30-31 1.598049714559556E-5 4.186890252146037E-4 0.0 0.013311754122281102 7.031418744062047E-5 32-33 2.5568795432952896E-5 4.28277323501961E-4 0.0 0.033562240105179796 7.670638629885869E-5 34-35 2.5568795432952896E-5 4.921993120843432E-4 0.0 0.05314793740682172 7.670638629885869E-5 36-37 2.5568795432952896E-5 5.561213006667255E-4 0.0 0.07855692786831867 8.309858515709691E-5 38-39 2.5568795432952896E-5 5.657095989540829E-4 0.0 0.10247973209527521 8.309858515709691E-5 40-41 2.5568795432952896E-5 6.488081841111797E-4 0.0 0.1216083871785531 8.309858515709691E-5 42-43 2.5568795432952896E-5 6.679847806858944E-4 0.0 0.14172783308485792 8.629468458621603E-5 44-45 2.5568795432952896E-5 7.734560618468251E-4 0.0 0.1576795653355914 8.949078401533514E-5 46-47 2.5568795432952896E-5 8.629468458621603E-4 0.0 0.1705918070292326 9.268688344445426E-5 48-49 2.5568795432952896E-5 8.661429452912794E-4 0.0 0.1792340598855707 1.0866738059004981E-4 50-51 2.5568795432952896E-5 9.97183021885163E-4 0.0 0.18589792719528403 1.0866738059004981E-4 52-53 2.5568795432952896E-5 0.0010035752207434012 0.0 0.19163492567055285 1.2784397716476448E-4 54-55 2.5568795432952896E-5 0.0010099674196016395 0.0 0.1961446219650399 1.5021667316859828E-4 56-57 2.5568795432952896E-5 0.0010163596184598776 0.0 0.20012056965486408 1.5341277259771737E-4 58-59 2.5568795432952896E-5 0.0010259479167472351 0.0 0.2033326495811288 1.5660887202683648E-4 60-61 2.5568795432952896E-5 0.0010355362150345922 0.0 0.20657029830282647 1.598049714559556E-4 62-63 2.5568795432952896E-5 0.0010515167121801878 0.0 0.20956504346791105 1.7258936917243206E-4 64-65 2.5568795432952896E-5 0.0011569879933411185 0.0 0.21215068790606845 1.7258936917243206E-4 66-67 2.5568795432952896E-5 0.001166576291628476 0.0 0.2146532337590687 1.7898156803067028E-4 68-69 2.5568795432952896E-5 0.0012017333853487863 0.0 0.21693844485088887 1.853737668889085E-4 70-71 3.196099429119112E-5 0.001220909981923501 0.0 0.21879857471863617 1.9496206517626583E-4 72-73 3.835319314942934E-5 0.001230498280210858 0.0 0.22027836875431833 2.109425623218614E-4 74-75 4.474539200766757E-5 0.0012592631750729302 0.0 0.22162392661397748 2.109425623218614E-4 76-77 5.752978972414402E-5 0.0013008124676514785 0.0 0.22303979866107726 2.109425623218614E-4 78-79 5.752978972414402E-5 0.0013295773625135506 0.0 0.22407853097554095 2.109425623218614E-4 80-81 6.392198858238224E-5 0.0013295773625135506 0.0 0.22458031858591265 2.141386617509805E-4 82-83 6.392198858238224E-5 0.0013391656608009081 0.0 0.2249254973242575 2.1733476118009963E-4 84-85 6.392198858238224E-5 0.0013583422573756228 0.0 0.2250565374008514 2.2053086060921874E-4 86-87 6.392198858238224E-5 0.001425460345387124 0.0 0.22510447889228818 2.3011915889657608E-4 88 6.392198858238224E-5 0.001508558930544221 0.0 0.2251076749917173 2.365113577548143E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 23570 0.0 20.36167 1 GTACATG 38500 0.0 19.907042 1 GGTATCA 17855 0.0 19.840979 1 TCAACGC 22565 0.0 19.61345 4 TACATGG 37650 0.0 19.513506 2 ATCAACG 22750 0.0 19.51169 3 CAACGCA 23160 0.0 19.089579 5 AACGCAG 24050 0.0 18.452168 6 ACATGGG 38890 0.0 18.372702 3 TATCAAC 26990 0.0 17.082384 2 CATGGGG 28010 0.0 16.367193 4 CGCAGAG 27545 0.0 16.046783 8 ACGCAGA 27755 0.0 15.95759 7 AGAGTAC 24780 0.0 13.978883 10-11 TAGCCCT 10135 0.0 13.413591 4 TATACTG 9640 0.0 13.389542 5 GTATAGA 7980 0.0 13.167584 1 GTGTAGC 9635 0.0 13.086953 1 GAGTACA 27950 0.0 12.797559 1 GTATAGG 5170 0.0 12.775358 1 >>END_MODULE