##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138829_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7831117 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50893927392478 34.0 31.0 34.0 31.0 34.0 2 32.70273780866765 34.0 31.0 34.0 31.0 34.0 3 32.80796749684624 34.0 31.0 34.0 31.0 34.0 4 36.25487092071285 37.0 37.0 37.0 35.0 37.0 5 36.10960313835178 37.0 35.0 37.0 35.0 37.0 6 36.15318287289029 37.0 36.0 37.0 35.0 37.0 7 36.14346510210485 37.0 36.0 37.0 35.0 37.0 8 36.109036041729425 37.0 36.0 37.0 35.0 37.0 9 37.978159948318996 39.0 38.0 39.0 35.0 39.0 10-11 37.865370610603826 39.0 38.0 39.0 35.0 39.0 12-13 37.888574069318594 39.0 38.0 39.0 35.0 39.0 14-15 39.266497103797576 40.0 39.0 41.0 36.0 41.0 16-17 39.243602157904164 40.0 39.0 41.0 36.0 41.0 18-19 39.273531732446344 40.0 39.0 41.0 36.0 41.0 20-21 39.272500387966986 40.0 39.0 41.0 36.0 41.0 22-23 39.237919137562166 40.0 39.0 41.0 36.0 41.0 24-25 39.24332456079115 40.0 39.0 41.0 36.0 41.0 26-27 39.12399673137678 40.0 39.0 41.0 36.0 41.0 28-29 39.0419338110258 40.0 39.0 41.0 36.0 41.0 30-31 38.95604665668512 40.0 38.5 41.0 35.0 41.0 32-33 38.88080082424331 40.0 38.0 41.0 35.0 41.0 34-35 38.82377622273469 40.0 38.0 41.0 35.0 41.0 36-37 38.79158504790818 40.0 38.0 41.0 35.0 41.0 38-39 38.73140696631937 40.0 38.0 41.0 35.0 41.0 40-41 38.70555672088033 40.0 38.0 41.0 35.0 41.0 42-43 38.677711122168475 40.0 38.0 41.0 35.0 41.0 44-45 38.61424937706418 40.0 38.0 41.0 35.0 41.0 46-47 38.53564148629425 40.0 38.0 41.0 34.0 41.0 48-49 38.500473594286554 40.0 38.0 41.0 34.0 41.0 50-51 38.42880555395173 40.0 38.0 41.0 34.0 41.0 52-53 38.25994530399505 40.0 37.5 41.0 34.0 41.0 54-55 38.11548684892691 40.0 37.0 41.0 33.5 41.0 56-57 37.96676842282157 40.0 37.0 41.0 33.0 41.0 58-59 37.799232473919744 39.0 36.5 41.0 33.0 41.0 60-61 37.66265535203841 39.0 36.0 41.0 33.0 41.0 62-63 37.45396446870157 39.0 35.5 40.5 33.0 41.0 64-65 37.21845602154198 39.0 35.0 40.0 33.0 41.0 66-67 36.97420053805214 38.0 35.0 40.0 32.0 41.0 68-69 36.69168394796341 37.5 35.0 40.0 32.0 41.0 70-71 36.38421355899045 37.0 35.0 39.5 32.0 41.0 72-73 36.066067998297655 36.5 35.0 39.0 32.0 41.0 74-75 35.67021606513168 36.0 34.5 39.0 31.0 40.0 76-77 33.710258917309304 34.5 32.0 36.5 29.0 39.0 78-79 34.822514811304984 35.0 34.0 37.0 30.5 39.0 80-81 34.79402106762082 35.0 34.0 37.0 31.0 39.0 82-83 34.53367042926894 35.0 34.0 36.0 31.0 38.5 84-85 34.234194211859496 35.0 34.0 36.0 31.0 37.0 86-87 34.065528661443366 35.0 34.0 36.0 31.0 37.0 88-89 33.8869133563759 35.0 34.0 35.0 30.5 36.5 90-91 33.73179056175391 35.0 34.0 35.0 30.0 36.0 92-93 33.66149553079383 35.0 34.0 35.0 30.0 36.0 94-95 33.60011972047053 35.0 34.0 35.0 30.0 36.0 96-97 33.62423009019672 35.0 34.0 35.0 30.5 35.5 98-99 33.66164833735667 35.0 34.0 35.0 31.0 35.0 100-101 32.40381399562699 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 5.0 20 26.0 21 119.0 22 503.0 23 1566.0 24 4306.0 25 9512.0 26 18144.0 27 30416.0 28 45743.0 29 64769.0 30 87832.0 31 117402.0 32 156312.0 33 217735.0 34 325436.0 35 514644.0 36 961381.0 37 1879786.0 38 2345111.0 39 1031059.0 40 19306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.34129052087972 19.921117255686514 13.260471015820604 24.477121207613166 2 14.881522615530743 21.224217355093497 40.937506145489955 22.956753883885803 3 18.5693049918677 25.939632877404335 29.990945097615068 25.5001170331129 4 12.54351378368535 17.590027240969437 38.83818772210227 31.028271253242938 5 13.262357253250473 37.85362418943266 35.65426213391267 13.229756423404204 6 30.285131189155233 37.73300215793521 18.844562900957555 13.137303751951993 7 26.83536716409677 32.197526866218446 23.31695465666009 17.650151313024693 8 24.615058107291716 36.71394514984261 21.32741727648814 17.34357946637753 9 25.82789913622795 16.41850070685957 21.09598158219319 36.657618574719294 10-11 24.460955990012113 26.56222904460505 28.973190946951675 20.00362401843116 12-13 25.093880771053634 24.074078448856937 29.086792856639825 21.745247923449604 14-15 22.175518928305934 25.429965884170652 26.501894908841532 25.892620278681882 16-17 22.01028920906175 28.540513441441366 27.130114388534864 22.31908296096202 18-19 22.031109313703393 28.00775530067497 28.491401706876147 21.46973367874549 20-21 22.81678163918315 27.186963196343868 28.30518449332886 21.691070671144125 22-23 22.562897218366718 27.140917917016388 28.127447294253592 22.1687375703633 24-25 22.294469606907562 27.230107700224675 28.23443817882684 22.240984514040925 26-27 22.28944138048953 27.390779357164963 28.135904397450457 22.18387486489505 28-29 22.178693036610508 27.49852843631381 28.141674977713947 22.18110354936174 30-31 22.510600256114945 27.308368210645 28.060528131717426 22.120503401522626 32-33 22.212731139788115 27.50524042470331 28.06133618091508 22.220692254593498 34-35 22.372887915978186 27.513176385362947 28.055455479928128 22.05848021873074 36-37 22.359383920101582 27.481966208631736 27.971680292399775 22.186969578866908 38-39 22.225027248095515 27.555777106782426 28.061918826202053 22.15727681892001 40-41 22.43656064327038 27.422584177030217 27.952436790643283 22.188418389056125 42-43 22.294387908552057 27.517023551595905 27.8297439972549 22.358844542597133 44-45 22.407088162088996 27.57187972695429 27.695326580614584 22.325705530342134 46-47 22.43784969929626 27.580577323579273 27.51426053467262 22.467312442451846 48-49 22.353592505219886 27.635950434085593 27.53114468159564 22.479312379098882 50-51 22.317627714225825 27.71777405225828 27.478986215461234 22.485612018054656 52-53 22.54795140757028 27.6141811634667 27.354226992109805 22.483640436853214 54-55 22.479930971313728 27.537746216827724 27.420671069136805 22.561651742721747 56-57 22.48084118361388 27.64754554861797 27.39106894046047 22.48054432730768 58-59 22.448067955006973 27.68585103153794 27.361592552170645 22.504488461284442 60-61 22.551083526072183 27.633295594569596 27.384448353732406 22.43117252562582 62-63 22.48688544910247 27.662826643028048 27.368751197268537 22.481536710600945 64-65 22.496436822292264 27.677589438173538 27.28705163299676 22.538922106537438 66-67 22.564437017915353 27.633807352863904 27.182778809444365 22.618976819776382 68-69 22.45913080729458 27.67210612318453 27.261909846924283 22.606853222596605 70-71 22.45101689020455 27.530898338784045 27.33598250149311 22.682102269518303 72-73 22.53686653719752 27.510428006820657 27.278348637773085 22.674356818208736 74-75 22.390429103801807 27.64348860602386 27.263080279098467 22.703002011075867 76-77 22.53857048865145 27.58135490496584 27.20631205981118 22.673762546571535 78-79 22.474667633530782 27.52932400730803 27.195331776039012 22.80067658312218 80-81 22.50635952944541 27.601066093909893 27.18564766689085 22.70692670975384 82-83 22.530483936011525 27.58765852518942 27.25548119109765 22.626376347701406 84-85 22.674333297366207 27.513558088854396 27.182270548169296 22.6298380656101 86-87 22.46279371980583 27.573677772259426 27.31106897486471 22.652459533070033 88-89 22.547251352537074 27.524081616430294 27.247616790860324 22.6810502401723 90-91 22.591492294132948 27.543689146403782 27.23477928118156 22.63003927828171 92-93 22.58574711019653 27.54726898244644 27.252656803395308 22.614327103961728 94-95 22.435290533976588 27.56101408100733 27.35672009975107 22.64697528526501 96-97 22.489294441350786 27.58472447887723 27.31839944386609 22.60758163590589 98-99 22.773015085089966 28.11820223133519 27.403087775159168 21.70569490841568 100-101 26.99834267819178 35.1005194972128 28.012984462059563 9.888153362535855 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1149.0 1 1070.5 2 1504.5 3 2153.0 4 2939.5 5 4935.5 6 6636.5 7 7631.5 8 8171.0 9 7952.0 10 7348.0 11 6609.5 12 6927.5 13 9052.0 14 13990.0 15 20397.5 16 25716.0 17 29137.5 18 30331.5 19 29808.0 20 28747.5 21 28092.5 22 29041.0 23 33020.0 24 40460.5 25 50849.5 26 64049.0 27 78965.5 28 95563.0 29 114428.5 30 132939.5 31 151297.0 32 170339.0 33 189028.0 34 206574.5 35 223173.0 36 242190.5 37 259798.5 38 274975.0 39 288488.0 40 300490.0 41 311045.0 42 317761.5 43 325054.0 44 332607.5 45 339789.0 46 345466.0 47 348800.0 48 349987.0 49 346203.0 50 340188.5 51 331624.5 52 318331.5 53 303422.5 54 288151.0 55 269742.0 56 248567.0 57 225888.0 58 201627.5 59 175524.0 60 148011.5 61 122476.5 62 99269.0 63 78519.5 64 60292.0 65 45586.0 66 34883.5 67 27038.0 68 20859.5 69 15128.5 70 10632.5 71 7503.5 72 5205.0 73 3539.5 74 2381.0 75 1620.0 76 1107.5 77 749.5 78 502.0 79 332.0 80 215.0 81 143.5 82 106.0 83 77.0 84 55.0 85 41.0 86 32.0 87 21.0 88 12.5 89 8.0 90 5.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0021835965418470953 3 0.0 4 0.00338393616134199 5 3.5754797176443666E-4 6 2.553914084031691E-4 7 0.0 8 0.0 9 0.0 10-11 3.95856683024912E-4 12-13 5.171676020164173E-4 14-15 1.9154355630237678E-5 16-17 0.0 18-19 0.0010981830561336268 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.11155848606883E-5 28-29 0.0 30-31 7.045269636239278E-5 32-33 0.00101520853057882 34-35 7.998818755088361E-4 36-37 3.6333137761568584E-4 38-39 0.0017541103780500575 40-41 1.3218389741049102E-5 42-43 6.6732197684793135E-6 44-45 1.2143625901841318E-4 46-47 6.83114795801959E-6 48-49 0.0 50-51 1.609645781349356E-4 52-53 2.122940924215255E-5 54-55 0.003463049087361352 56-57 0.002990194839792528 58-59 0.0016052868031790836 60-61 1.261750702850807E-4 62-63 1.5024544095233975E-5 64-65 1.3680394816194394E-4 66-67 3.846789454134421E-5 68-69 1.6368539697878847E-4 70-71 0.0 72-73 0.0 74-75 1.539685806852088E-4 76-77 1.641576537274868E-5 78-79 4.2411004042267633E-4 80-81 0.0 82-83 1.9667568495941514E-4 84-85 3.466709492084592E-5 86-87 0.0015986766470937113 88-89 0.0 90-91 1.7196324005172293E-4 92-93 1.83971602879266E-5 94-95 1.496862576040619E-4 96-97 2.8615553755319275E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 238.0 20-21 575.0 22-23 1176.0 24-25 2833.0 26-27 4517.0 28-29 9580.0 30-31 24002.0 32-33 28578.0 34-35 38908.0 36-37 62585.0 38-39 74989.0 40-41 71963.0 42-43 78213.0 44-45 90324.0 46-47 91172.0 48-49 86681.0 50-51 80193.0 52-53 76594.0 54-55 81007.0 56-57 84653.0 58-59 84580.0 60-61 82470.0 62-63 77294.0 64-65 78330.0 66-67 83770.0 68-69 84916.0 70-71 83211.0 72-73 78284.0 74-75 78665.0 76-77 78151.0 78-79 81936.0 80-81 83636.0 82-83 78692.0 84-85 76629.0 86-87 80254.0 88-89 85339.0 90-91 88331.0 92-93 90201.0 94-95 96639.0 96-97 147195.0 98-99 627405.0 100-101 4496408.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.93318132437732 #Duplication Level Percentage of deduplicated Percentage of total 1 90.81969314177589 78.9524485171831 2 6.591634500351034 11.460635144860754 3 1.5085418803557409 3.9342703446114826 4 0.5113933794644567 1.7782821354027885 5 0.23057218923016504 1.0022186967352287 6 0.11741341156926498 0.6124272838718792 7 0.06820881343962755 0.4150726402667436 8 0.03839045867507477 0.2669923764101031 9 0.025807026109480376 0.2019138192196558 >10 0.0857333436680573 1.1844254167288764 >50 0.0022036675247560557 0.1310325044996411 >100 3.8576038838927297E-4 0.0499282694890918 >500 2.2427447972694934E-5 0.010352850720655166 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.5539140840316905E-5 0.0 4 0.0 5.107828168063381E-5 0.0 2.5539140840316905E-5 0.0 5 0.0 6.384785210079226E-5 0.0 2.5539140840316905E-5 0.0 6 0.0 6.384785210079226E-5 0.0 3.8308711260475355E-5 1.2769570420158452E-5 7 0.0 6.384785210079226E-5 0.0 5.107828168063381E-5 2.5539140840316905E-5 8 0.0 6.384785210079226E-5 0.0 6.384785210079226E-5 2.5539140840316905E-5 9 0.0 1.915435563023768E-4 0.0 1.1492613378142607E-4 2.5539140840316905E-5 10-11 0.0 1.915435563023768E-4 0.0 1.5323484504190145E-4 2.5539140840316905E-5 12-13 0.0 1.915435563023768E-4 0.0 1.8515877109229756E-4 3.192392605039613E-5 14-15 0.0 2.2985226756285214E-4 0.0 2.1069791193261447E-4 4.469349647055458E-5 16-17 0.0 2.617761936132483E-4 0.0 2.3623705277293135E-4 5.107828168063381E-5 18-19 0.0 2.873153344535652E-4 0.0 2.8731533445356517E-4 5.107828168063381E-5 20-21 0.0 2.9370011966364443E-4 0.0 3.7670232739467433E-4 5.107828168063381E-5 22-23 0.0 3.0646969008380284E-4 0.0 4.597045351257043E-4 5.107828168063381E-5 24-25 0.0 3.2562404571404057E-4 0.0 5.299371724365757E-4 5.107828168063381E-5 26-27 0.0 3.320088309241198E-4 0.0 6.384785210079226E-4 5.107828168063381E-5 28-29 0.0 3.4477840134427824E-4 0.0 0.0011109526265537853 5.107828168063381E-5 30-31 0.0 3.830871126047536E-4 0.0 0.0030583121156279496 5.7463066890713036E-5 32-33 0.0 3.95856683024912E-4 0.0 0.006965800664196435 6.384785210079226E-5 34-35 0.0 4.660893203357835E-4 0.0 0.012169400610411005 7.661742252095071E-5 36-37 0.0 5.10782816806338E-4 0.0 0.01947359489074164 7.661742252095071E-5 38-39 0.0 5.235523872264966E-4 0.0 0.030895975631573376 7.661742252095071E-5 40-41 0.0 5.874002393272887E-4 0.0 0.042452436861816774 7.661742252095071E-5 42-43 0.0 6.257089505877641E-4 0.0 0.052355238722649654 7.661742252095071E-5 44-45 0.0 6.959415878986356E-4 0.0 0.06271136033339816 8.300220773102993E-5 46-47 0.0 7.470198695792695E-4 0.0 0.07417204978549037 8.938699294110916E-5 48-49 0.0 7.597894399994279E-4 0.0 0.08496872157573435 1.0215656336126762E-4 50-51 0.0 8.619460033606956E-4 0.0 0.09575900858076823 1.0215656336126762E-4 52-53 0.0 8.683307885707748E-4 0.0 0.1054511125296685 1.0215656336126762E-4 54-55 0.0 8.747155737808541E-4 0.0 0.11491336421100593 1.0854134857134684E-4 56-57 0.0 8.811003589909332E-4 0.0 0.12431176804024253 1.1492613378142607E-4 58-59 0.0 8.938699294110916E-4 0.0 0.1336016305209078 1.2131091899150529E-4 60-61 0.0 8.938699294110916E-4 0.0 0.14232324711787603 1.276957042015845E-4 62-63 0.0 9.130242850413294E-4 0.0 0.15090439844022252 1.276957042015845E-4 64-65 0.0 0.001021565633612676 0.0 0.15915992571685494 1.276957042015845E-4 66-67 0.0 0.0010598743448731514 0.0 0.16752399434205872 1.3408048941166375E-4 68-69 0.0 0.0010662591300832306 0.0 0.1754028192912965 1.468500598318222E-4 70-71 0.0 0.0010790287005033893 0.0 0.18273893749767756 1.5961963025198065E-4 72-73 0.0 0.0010854134857134685 0.0 0.1884022419790178 1.7877398588221833E-4 74-75 0.0 0.0011492613378142607 0.0 0.19306313518237564 1.915435563023768E-4 76-77 0.0 0.0012258787603352116 0.0 0.19745586740691015 1.915435563023768E-4 78-79 0.0 0.0012386483307553699 0.0 0.20105050148018477 1.915435563023768E-4 80-81 0.0 0.0012386483307553699 0.0 0.20272331520522552 1.915435563023768E-4 82-83 0.0 0.0012386483307553699 0.0 0.20335540894102336 1.915435563023768E-4 84-85 0.0 0.0012578026863856076 0.0 0.2039938874620313 1.915435563023768E-4 86-87 0.0 0.0012769570420158452 0.0 0.2042365093000143 1.915435563023768E-4 88-89 0.0 0.001359959249746875 0.0 0.20431312672253524 1.915435563023768E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7905 0.0 40.551403 1 GTATCAA 13405 0.0 32.892464 1 TCAACGC 15265 0.0 28.098995 4 ATCAACG 15515 0.0 27.672707 3 CAACGCA 15575 0.0 27.618685 5 AACGCAG 16240 0.0 26.461943 6 TATCAAC 16765 0.0 25.880816 2 GTACATG 22415 0.0 23.619856 1 TACATGG 22975 0.0 22.450033 2 ACGCAGA 19175 0.0 22.325293 7 CGCAGAG 19470 0.0 22.008274 8 ACATGGG 22975 0.0 21.729904 3 CATGGGG 16635 0.0 19.867025 4 GCAGAGT 24235 0.0 17.59575 9 GAGTACT 11910 0.0 17.225554 12-13 AGAGTAC 20655 0.0 16.390202 10-11 ATGGGGG 10830 0.0 16.1551 5 CAGAGTA 23090 0.0 15.996255 10-11 GAGTACA 16430 0.0 15.482591 1 GTACTTT 13615 0.0 14.993078 14-15 >>END_MODULE