##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138828_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25916825 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.213757896655935 33.0 31.0 34.0 30.0 34.0 2 32.43871585350443 34.0 31.0 34.0 31.0 34.0 3 32.53442028489215 34.0 31.0 34.0 31.0 34.0 4 36.072743941435725 37.0 35.0 37.0 35.0 37.0 5 35.87614933542206 37.0 35.0 37.0 35.0 37.0 6 35.90906432404432 37.0 35.0 37.0 35.0 37.0 7 35.89267500938097 37.0 35.0 37.0 35.0 37.0 8 35.847988324187085 37.0 35.0 37.0 35.0 37.0 9 37.66430425023127 39.0 37.0 39.0 35.0 39.0 10-11 37.52339036513925 39.0 37.0 39.0 35.0 39.0 12-13 37.54362696819537 39.0 37.0 39.0 35.0 39.0 14-15 38.821972888268526 40.0 38.0 41.0 35.5 41.0 16-17 38.78205819964444 40.0 38.0 41.0 35.0 41.0 18-19 38.81183086662814 40.0 38.0 41.0 35.0 41.0 20-21 38.81100839339169 40.0 38.0 41.0 35.0 41.0 22-23 38.7729569698271 40.0 38.0 41.0 35.0 41.0 24-25 38.76965883158549 40.0 38.0 41.0 35.0 41.0 26-27 38.6309401798326 40.0 38.0 41.0 35.0 41.0 28-29 38.53692589299537 40.0 38.0 41.0 34.0 41.0 30-31 38.430420234123616 40.0 38.0 41.0 34.0 41.0 32-33 38.341308637550654 40.0 38.0 41.0 34.0 41.0 34-35 38.27130306900938 40.0 38.0 41.0 34.0 41.0 36-37 38.23622612909911 40.0 38.0 41.0 34.0 41.0 38-39 38.164969530212936 40.0 38.0 41.0 34.0 41.0 40-41 38.13541435901383 40.0 38.0 41.0 34.0 41.0 42-43 38.10115455431221 40.0 38.0 41.0 33.0 41.0 44-45 38.030893877025704 40.0 37.5 41.0 33.0 41.0 46-47 37.94827766240296 40.0 37.0 41.0 33.0 41.0 48-49 37.91252809979093 40.0 37.0 41.0 33.0 41.0 50-51 37.83612790738186 40.0 37.0 41.0 33.0 41.0 52-53 37.655118237268454 39.0 37.0 41.0 33.0 41.0 54-55 37.50529559407842 39.0 36.0 40.5 32.5 41.0 56-57 37.355623145456946 39.0 36.0 40.0 32.0 41.0 58-59 37.18842184851849 39.0 35.5 40.0 32.0 41.0 60-61 37.05899342718884 39.0 35.0 40.0 31.5 41.0 62-63 36.8574828609558 38.5 35.0 40.0 31.0 41.0 64-65 36.6384443343529 38.0 35.0 40.0 31.0 41.0 66-67 36.416912698666096 38.0 35.0 40.0 31.0 41.0 68-69 36.14944346387341 37.0 34.5 40.0 31.0 41.0 70-71 35.854230022270244 37.0 34.0 39.0 31.0 41.0 72-73 35.55110582671678 36.0 34.0 39.0 30.0 40.5 74-75 35.160411211979586 36.0 34.0 39.0 30.0 40.0 76-77 33.13606013622949 34.5 31.0 36.5 27.0 39.0 78-79 34.33184049650073 35.0 33.5 37.0 29.5 39.0 80-81 34.34667645087503 35.0 34.0 37.0 30.0 39.0 82-83 34.0844691845629 35.0 33.5 36.0 29.5 38.5 84-85 33.777963099328005 35.0 33.0 36.0 29.0 37.0 86-87 33.59933705415749 35.0 33.0 35.5 29.0 37.0 88-89 33.41729237011238 35.0 33.0 35.0 29.0 36.5 90-91 33.25135226970678 35.0 33.0 35.0 29.0 36.0 92-93 33.18186139749304 35.0 33.0 35.0 29.0 36.0 94-95 33.12587215829136 35.0 33.0 35.0 29.0 36.0 96-97 33.175291608561395 34.0 33.0 35.0 29.0 35.0 98-99 33.250716553411976 34.0 33.0 35.0 29.0 35.0 100-101 32.01766659107224 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 7.0 19 45.0 20 145.0 21 668.0 22 2874.0 23 9320.0 24 24154.0 25 51736.0 26 93781.0 27 151985.0 28 224467.0 29 311596.0 30 414465.0 31 543945.0 32 719490.0 33 983709.0 34 1435901.0 35 2211206.0 36 3817839.0 37 6290925.0 38 6397645.0 39 2205302.0 40 25617.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.750272265217674 20.58506394977008 13.616243502049343 24.0484202829629 2 14.87765753416359 21.58792876506378 40.89967519986165 22.63473850091098 3 18.378481932103952 26.307844421529257 30.527327325009914 24.786346321356877 4 12.485415077658212 18.00440486937979 39.234800281629504 30.275379771332496 5 12.866524658076234 38.15884342252588 36.05807782475127 12.916554094646617 6 29.868224116236885 38.44782887347285 18.803375271494513 12.880571738795751 7 26.2936412928667 32.65687830202967 23.596933652173828 17.452546752929806 8 24.264623463715175 37.079904656531035 21.449417511597197 17.206054368156593 9 25.45231524309016 16.55160306094593 21.44705611123276 36.549025584731154 10-11 24.09931482357041 26.854810201840273 29.284759429088258 19.761115545501056 12-13 24.752132298023994 24.341838911310404 29.45443263153291 21.45159615913269 14-15 21.783724100123077 25.859424430973828 26.874593266103382 25.482258202799713 16-17 21.555580207066257 28.970477672322904 27.56980069896679 21.904141421644045 18-19 21.52796830644007 28.458188227422248 28.963558182310358 21.05028528382733 20-21 22.340890851705606 27.63693619843656 28.741281074013546 21.280891875844294 22-23 22.016327299857576 27.53960734300655 28.64381872374001 21.80024663339587 24-25 21.81996824440408 27.632231028378758 28.739725436653924 21.808075290563238 26-27 21.855737451900296 27.800330874888036 28.6050699259307 21.738861747280968 28-29 21.77986764987992 27.93562516381616 28.615846090330386 21.668661095973533 30-31 22.029401599239172 27.856184954298396 28.480463815708422 21.63394963075401 32-33 21.766463454204075 27.955878914600774 28.474295031085795 21.80336260010936 34-35 21.890089298326558 27.965806265701847 28.482548859722677 21.66155557624891 36-37 21.940968595567114 27.89231550396626 28.431768058550805 21.734947841915826 38-39 21.81878275464293 27.967616225707292 28.499903131694186 21.713697887955593 40-41 22.009565624009465 27.831414497303996 28.42836025257423 21.730659626112303 42-43 21.888836861793912 27.995640486867046 28.238651776577516 21.876870874761526 44-45 22.025367865148887 28.07575323805543 28.025685136376875 21.873193760418804 46-47 21.97797296978969 28.028691093686714 27.905451927789443 22.087884008734157 48-49 21.988167755567968 28.099394392388277 27.912683071124427 21.999754780919325 50-51 21.93062751136287 28.211086431928074 27.84982073532918 22.008465321379877 52-53 22.089503866833915 28.080352427397102 27.707285717804986 22.122857987964 54-55 22.053224531593703 28.012953276144813 27.772776474950277 22.161045717311204 56-57 22.079872167571775 28.06717568981399 27.761846114522097 22.091106028092135 58-59 22.02296353102216 28.08088664787047 27.775862818162295 22.120287002945073 60-61 22.13005190860418 28.04467715376575 27.78317147764817 22.042099459981902 62-63 22.038115434033234 28.117100918751476 27.754612762894194 22.0901708843211 64-65 21.97912269843879 28.12567763679288 27.723889848395377 22.171309816372954 66-67 22.02317076752639 28.215883000122847 27.5561941739945 22.204752058356263 68-69 22.008954755260017 28.191952920205033 27.614872784560124 22.184219539974826 70-71 22.021133182383252 27.959653922108764 27.634658799658872 22.38455409584911 72-73 22.03363326084908 27.99770572809831 27.621760675367142 22.346900335685472 74-75 21.97348843225659 28.079286522122977 27.600312290175705 22.346912755444734 76-77 22.091069762852364 28.01706370342547 27.51862111550102 22.373245418221146 78-79 22.03847656840351 28.01703419341239 27.4999003917206 22.444588846463503 80-81 22.04366364726827 28.063115728128533 27.49055720305915 22.40266342154404 82-83 22.089913477209226 28.032009472329783 27.561480470256576 22.316596580204415 84-85 22.256089062572805 27.999576201336996 27.452862628011005 22.291472108079194 86-87 22.058859913867664 28.03403974697764 27.57632329175338 22.330777047401313 88-89 22.142602150221123 27.994386949916578 27.561060073237254 22.301950826625045 90-91 22.133854297587128 28.00242006243318 27.61261210270461 22.25111353727508 92-93 22.04375722990974 27.934059520053257 27.682188279728848 22.339994970308155 94-95 21.929496326955782 28.026768039014016 27.764806433269023 22.27892920076118 96-97 21.916315293817 28.079222213307954 27.76770446529576 22.236758027579285 98-99 22.17995869168523 28.675418322252483 27.80353864784718 21.341084338215108 100-101 26.22535156658265 35.73839091488359 28.40872669013172 9.627530828402044 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3661.0 1 3436.5 2 5310.0 3 7946.5 4 11052.0 5 18441.5 6 24670.5 7 28353.5 8 30049.5 9 28761.0 10 25903.0 11 23081.0 12 24739.0 13 32708.0 14 51564.0 15 77312.0 16 98419.5 17 111777.0 18 117177.5 19 115832.0 20 111998.5 21 109502.0 22 112749.5 23 126699.5 24 152419.5 25 190448.0 26 241095.0 27 298007.5 28 361215.0 29 429389.0 30 491676.5 31 552740.0 32 615668.0 33 673900.5 34 728644.0 35 781250.5 36 838236.5 37 890083.5 38 929059.0 39 961345.5 40 998279.0 41 1036989.5 42 1063614.5 43 1090251.5 44 1118084.5 45 1140595.0 46 1152676.0 47 1147297.0 48 1125420.5 49 1092907.0 50 1058575.0 51 1017092.5 52 961255.5 53 908850.0 54 855518.5 55 789528.5 56 721964.5 57 651955.5 58 575647.5 59 496557.0 60 418772.0 61 343320.0 62 273544.5 63 213174.5 64 161697.0 65 122043.5 66 93151.0 67 71482.0 68 54475.0 69 40007.5 70 29063.5 71 21051.5 72 15385.5 73 11219.5 74 8096.0 75 5695.5 76 3851.5 77 2514.0 78 1675.5 79 1157.5 80 815.5 81 588.0 82 432.5 83 299.5 84 205.5 85 142.0 86 102.0 87 83.5 88 64.0 89 45.5 90 29.5 91 16.0 92 10.5 93 8.0 94 5.5 95 5.0 96 4.5 97 3.5 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010495112730822544 3 0.0 4 0.0019523996477191939 5 3.2025527818318794E-4 6 3.665572461132874E-4 7 0.0 8 0.0 9 0.0 10-11 2.6816556426182607E-4 12-13 4.8809991192979847E-4 14-15 1.1575491982524866E-5 16-17 0.0 18-19 0.0010282895377809588 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.4073330465644374E-5 28-29 0.0 30-31 5.419454032200577E-5 32-33 8.286423025776695E-4 34-35 6.718155780946762E-4 36-37 3.620119245162479E-4 38-39 0.0015490805477738018 40-41 3.972567041041385E-6 42-43 1.8027094723369223E-5 44-45 1.2134288226314505E-5 46-47 1.4313727418740306E-5 48-49 6.20179384406222E-5 50-51 2.5065840652523994E-5 52-53 6.327453968563311E-6 54-55 0.003070169359441526 56-57 0.002869144163331645 58-59 0.0014716121878877927 60-61 1.7802328091763835E-4 62-63 1.7777738666752713E-5 64-65 1.1457749470197034E-4 66-67 1.818676994327092E-5 68-69 1.4731980164125308E-4 70-71 0.0 72-73 0.0 74-75 1.3631050135624165E-4 76-77 2.422046200821926E-6 78-79 3.8763662903140255E-4 80-81 0.0 82-83 1.3873493165223594E-4 84-85 1.5343902895599065E-5 86-87 0.0015093600551958969 88-89 0.0 90-91 9.633997220110101E-5 92-93 1.3614365420949509E-5 94-95 1.8587263136194508E-4 96-97 8.510793061513544E-6 98-99 5.938344543938108E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1052.0 20-21 4714.0 22-23 6727.0 24-25 10342.0 26-27 16810.0 28-29 29396.0 30-31 64104.0 32-33 81818.0 34-35 110838.0 36-37 170041.0 38-39 198430.0 40-41 206203.0 42-43 228270.0 44-45 267098.0 46-47 269691.0 48-49 253801.0 50-51 237425.0 52-53 218618.0 54-55 233505.0 56-57 244998.0 58-59 247737.0 60-61 256048.0 62-63 240023.0 64-65 257648.0 66-67 271055.0 68-69 278042.0 70-71 276646.0 72-73 262424.0 74-75 266236.0 76-77 258508.0 78-79 275778.0 80-81 282649.0 82-83 271609.0 84-85 269867.0 86-87 283374.0 88-89 303137.0 90-91 318284.0 92-93 331714.0 94-95 372580.0 96-97 568737.0 98-99 2181939.0 100-101 1.4988909E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.80339324527144 #Duplication Level Percentage of deduplicated Percentage of total 1 87.92465838342017 71.04610747311652 2 7.671581007330369 12.397795538965427 3 2.1796404996032215 5.28367045268277 4 0.9555963117821444 3.0886169825865446 5 0.4669454621489781 1.8865388901059443 6 0.24277352500497576 1.1770154766310676 7 0.1559912821926751 0.8823237442494183 8 0.0973479394897634 0.6292835068966592 9 0.07755518511871273 0.5640049909221452 >10 0.22412625550043774 2.7027203628717573 >50 0.0028764006644732493 0.16097922662065356 >100 8.509755516845985E-4 0.1057019668785791 >500 1.8988668178828888E-5 0.01057097548503475 >1k 3.778352429689454E-5 0.06467041198746729 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1575491982524866E-5 2 0.0 5.787745991262433E-5 0.0 0.0 1.5433989310033156E-5 3 0.0 6.173595724013262E-5 0.0 0.0 1.5433989310033156E-5 4 0.0 1.0803792517023207E-4 0.0 0.0 1.9292486637541442E-5 5 0.0 1.1189642249774037E-4 0.0 0.0 1.9292486637541442E-5 6 7.716994655016578E-6 1.1575491982524866E-4 0.0 3.858497327508289E-6 2.700948129255802E-5 7 7.716994655016578E-6 1.1961341715275694E-4 0.0 1.5433989310033156E-5 2.700948129255802E-5 8 7.716994655016578E-6 1.4662289844531495E-4 0.0 2.700948129255802E-5 2.700948129255802E-5 9 7.716994655016578E-6 2.3922683430551388E-4 0.0 5.016046525760775E-5 3.086797862006631E-5 10-11 7.716994655016578E-6 2.469438289605305E-4 0.0 1.389059037902984E-4 3.086797862006631E-5 12-13 7.716994655016578E-6 2.469438289605305E-4 0.0 2.3343908831425145E-4 3.086797862006631E-5 14-15 7.716994655016578E-6 3.3954776482072937E-4 0.0 3.9163747874209124E-4 5.20897139213619E-5 16-17 2.3150983965049732E-5 3.684864947770415E-4 1.9292486637541445E-6 6.906710216239837E-4 6.55944545676409E-5 18-19 2.3150983965049732E-5 3.9742522473335375E-4 3.858497327508289E-6 9.549780885583014E-4 8.102844387767406E-5 20-21 2.3150983965049732E-5 4.225054573621576E-4 3.858497327508289E-6 0.0014083515245405253 8.29576925414282E-5 22-23 2.5080232628803875E-5 4.6301967930099464E-4 3.858497327508289E-6 0.0021048102921557713 1.0225017917896964E-4 24-25 2.700948129255802E-5 5.170386418861107E-4 3.858497327508289E-6 0.002699018880592048 1.2733041180777353E-4 26-27 2.700948129255802E-5 5.47906620506177E-4 3.858497327508289E-6 0.003194835787176863 1.350474064627901E-4 28-29 3.086797862006631E-5 5.61411361152456E-4 3.858497327508289E-6 0.0045665315871060595 1.350474064627901E-4 30-31 3.086797862006631E-5 6.270058157200969E-4 3.858497327508289E-6 0.007522140539977408 1.3697665512654424E-4 32-33 3.279722728382046E-5 6.385813077026217E-4 3.858497327508289E-6 0.013037862469650507 1.4276440111780667E-4 34-35 3.8584973275082884E-5 7.620532221828871E-4 3.858497327508289E-6 0.02004103511907805 1.5626914176408566E-4 36-37 3.8584973275082884E-5 8.700911473531191E-4 3.858497327508289E-6 0.029945797758791824 1.5819839042783982E-4 38-39 3.8584973275082884E-5 8.932421313181688E-4 3.858497327508289E-6 0.049107095487197994 1.6398613641910228E-4 40-41 3.8584973275082884E-5 9.74270575195843E-4 3.858497327508289E-6 0.09336020133639056 1.659153850828564E-4 42-43 3.8584973275082884E-5 0.0010205725431259422 3.858497327508289E-6 0.1101871081816542 1.6977388241036468E-4 44-45 4.051422193883703E-5 0.0011594784469162408 3.858497327508289E-6 0.13346349330984794 1.7942012572913542E-4 46-47 4.244347060259117E-5 0.001282950361396506 3.858497327508289E-6 0.15971477987755056 1.9485411503916857E-4 48-49 4.437271926634532E-5 0.0012925966047152766 3.858497327508289E-6 0.1826265370082948 2.083588556854476E-4 50-51 5.401896258511604E-5 0.001417997767859296 3.858497327508289E-6 0.2064778382382873 2.083588556854476E-4 52-53 5.787745991262433E-5 0.0014295732598418208 3.858497327508289E-6 0.2387252296529378 2.218635963317266E-4 54-55 5.787745991262433E-5 0.0014507949951431164 3.858497327508289E-6 0.3040727403916182 2.353683369780056E-4 56-57 5.787745991262433E-5 0.0014739459791081662 3.858497327508289E-6 0.3750536572284606 2.3922683430551388E-4 58-59 5.787745991262433E-5 0.0015067432063919867 3.858497327508289E-6 0.45023261915763213 2.4694382896053044E-4 60-61 6.559445456764092E-5 0.001551115925658332 3.858497327508289E-6 0.5000149516771442 2.5466082361554705E-4 62-63 8.488694120518234E-5 0.001562691417640857 3.858497327508289E-6 0.5206984266012523 2.5851932094305536E-4 64-65 8.488694120518234E-5 0.0016861633321211221 3.858497327508289E-6 0.5404616499127497 2.5851932094305536E-4 66-67 8.488694120518234E-5 0.0017131728134136802 3.858497327508289E-6 0.5487728531562026 2.6430706693431776E-4 68-69 8.488694120518234E-5 0.0017459700406975006 3.858497327508289E-6 0.5559612336773505 2.739533102530885E-4 70-71 9.067468719644477E-5 0.001778767267981321 3.858497327508289E-6 0.563145755701171 2.9517504555438406E-4 72-73 1.0610867650647793E-4 0.0018019182519463707 3.858497327508289E-6 0.5686749823714903 3.4340626214823767E-4 74-75 1.0803792517023207E-4 0.0018289277332389287 3.858497327508289E-6 0.5731083958007974 3.4340626214823767E-4 76-77 1.0996717383398623E-4 0.001911885425780357 3.858497327508289E-6 0.5769630346309782 3.453355108119918E-4 78-79 1.1189642249774037E-4 0.0019427534044004233 3.858497327508289E-6 0.5803392197925479 3.47264759475746E-4 80-81 1.1189642249774037E-4 0.0019446826530641775 3.858497327508289E-6 0.5819771519080752 3.60769500122025E-4 82-83 1.1189642249774037E-4 0.0019639751397017187 3.858497327508289E-6 0.5825482095125464 3.8970823007833714E-4 84-85 1.1189642249774037E-4 0.00200641861030431 3.858497327508289E-6 0.5831983663122315 3.8970823007833714E-4 86-87 1.1189642249774037E-4 0.0020488620809069012 3.858497327508289E-6 0.5834626733791659 3.8970823007833714E-4 88-89 1.1189642249774037E-4 0.0021337490221120838 3.858497327508289E-6 0.5835629943096811 3.8970823007833714E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 41920 0.0 29.09777 1 GTATCAA 63355 0.0 24.916134 1 TCAACGC 60225 0.0 24.759672 4 ATCAACG 60495 0.0 24.649122 3 CAACGCA 60980 0.0 24.42508 5 AACGCAG 62820 0.0 23.776094 6 GTACATG 68230 0.0 21.082767 1 TATCAAC 74110 0.0 21.006844 2 TACATGG 68130 0.0 20.579735 2 ACGCAGA 73065 0.0 20.384998 7 CGCAGAG 73815 0.0 20.143887 8 ACATGGG 68020 0.0 19.99802 3 CATGGGG 49585 0.0 17.869856 4 AGAGTAC 71860 0.0 16.796164 10-11 GAGTACT 46080 0.0 16.719677 12-13 GCAGAGT 88835 0.0 16.67211 9 CAGAGTA 77675 0.0 16.556181 10-11 GTACTTT 52010 0.0 14.866692 14-15 AGTACTT 50260 0.0 14.605325 12-13 GAGTACA 50110 0.0 14.5284395 1 >>END_MODULE