##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138827_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24282516 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.595344362174004 31.0 31.0 34.0 30.0 34.0 2 31.79841817050589 31.0 31.0 34.0 30.0 34.0 3 31.858145136195937 31.0 31.0 34.0 30.0 34.0 4 35.5902146219115 37.0 35.0 37.0 33.0 37.0 5 35.32376278471308 37.0 35.0 37.0 33.0 37.0 6 35.3473119507056 37.0 35.0 37.0 33.0 37.0 7 35.30566638975961 37.0 35.0 37.0 32.0 37.0 8 35.29064554101395 37.0 35.0 37.0 32.0 37.0 9 37.0387305005791 39.0 37.0 39.0 33.0 39.0 10-11 36.872559787461896 39.0 37.0 39.0 33.0 39.0 12-13 36.87601482482293 39.0 37.0 39.0 33.0 39.0 14-15 37.950802112104036 40.0 37.0 41.0 33.0 41.0 16-17 37.86951687790507 39.0 37.0 41.0 33.0 41.0 18-19 37.92553220185256 39.5 37.0 41.0 33.0 41.0 20-21 37.96491744741421 40.0 37.0 41.0 33.0 41.0 22-23 37.946096799471306 40.0 37.0 41.0 33.0 41.0 24-25 37.89745715127897 39.0 37.0 41.0 33.0 41.0 26-27 37.76421520569343 39.0 37.0 41.0 33.0 41.0 28-29 37.589040067107845 39.0 37.0 40.5 32.0 41.0 30-31 37.48453493127699 39.0 37.0 40.0 32.0 41.0 32-33 37.386150223070516 39.0 36.0 40.0 32.0 41.0 34-35 37.313389923478184 39.0 36.0 40.0 31.0 41.0 36-37 37.266879276860024 39.0 36.0 40.0 31.0 41.0 38-39 37.18078917543227 39.0 36.0 40.0 31.0 41.0 40-41 37.1605242955628 39.0 36.0 40.0 31.0 41.0 42-43 37.105372298385674 39.0 36.0 40.0 31.0 41.0 44-45 37.03250097608626 39.0 36.0 40.0 31.0 41.0 46-47 36.97177043481855 39.0 35.5 40.0 31.0 41.0 48-49 36.98155694885471 39.0 36.0 40.0 31.0 41.0 50-51 36.86843443898418 39.0 35.0 40.0 31.0 41.0 52-53 36.67259248013039 39.0 35.0 40.0 30.0 41.0 54-55 36.46919002511848 38.0 35.0 40.0 30.0 41.0 56-57 36.3435721022548 38.0 35.0 40.0 30.0 41.0 58-59 36.14876833783653 38.0 34.0 40.0 29.5 41.0 60-61 35.967420606087536 38.0 34.0 40.0 29.0 41.0 62-63 35.82168895133175 37.5 34.0 40.0 29.0 41.0 64-65 35.56397567025747 37.0 34.0 40.0 29.0 41.0 66-67 35.424451785731705 37.0 34.0 39.0 29.0 41.0 68-69 35.157619349249245 36.0 34.0 39.0 29.0 40.5 70-71 34.8413150135679 36.0 33.0 39.0 28.0 40.0 72-73 34.55112424790185 35.0 33.0 38.5 28.0 40.0 74-75 34.206155808711145 35.0 33.0 37.5 28.0 39.5 76-77 32.086928411270456 33.5 30.0 35.5 25.5 38.5 78-79 33.37669311805645 34.5 32.0 36.0 27.0 39.0 80-81 33.40350561102265 35.0 32.0 36.0 27.5 38.5 82-83 33.252341281454235 35.0 32.0 36.0 27.5 37.5 84-85 33.06234339486002 34.5 32.0 35.5 27.0 37.0 86-87 32.83099893595829 34.0 32.0 35.0 27.0 36.5 88-89 32.68431209412299 34.0 32.0 35.0 27.0 36.0 90-91 32.53135431213113 34.0 32.0 35.0 27.0 36.0 92-93 32.5107191762787 34.0 32.0 35.0 27.0 36.0 94-95 32.491087627950606 34.0 32.0 35.0 27.0 35.0 96-97 32.53866213928702 34.0 32.0 35.0 27.0 35.0 98-99 32.70875074272886 34.0 32.0 35.0 29.0 35.0 100-101 31.55050082778399 33.0 29.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 9.0 19 34.0 20 245.0 21 1353.0 22 5869.0 23 18802.0 24 46656.0 25 97302.0 26 172546.0 27 270569.0 28 387061.0 29 520836.0 30 673522.0 31 851762.0 32 1081473.0 33 1394347.0 34 1871503.0 35 2598149.0 36 3821417.0 37 5094606.0 38 4166638.0 39 1198710.0 40 9104.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.340374284114546 20.660532047008637 13.76731719233707 24.231776476539746 2 15.342104118730775 21.81444593358688 39.81810800499719 23.02534194268515 3 18.625847710093485 26.091906772604247 30.375403233179348 24.90684228412292 4 12.937596357938135 17.960055116215546 38.34854133071669 30.753807195129628 5 13.09105749548595 38.00674271178253 35.8200787686119 13.082121024119619 6 30.485469462884325 38.0995363083463 18.354733092732236 13.060261136037138 7 26.74673113555165 32.38209057010775 23.235999236487654 17.635179057852945 8 24.7680858753533 36.82509176244851 21.082165155604933 17.32465720659326 9 25.684933142842365 16.256017292442017 20.98825755947201 37.07079200524361 10-11 24.421478700673756 26.650871031467116 28.98869354041406 19.93895672744507 12-13 25.01283747930344 24.081255921208825 29.17285204128173 21.73305455820601 14-15 22.058883848774155 25.574930126680446 26.433729107807448 25.93245691673795 16-17 21.92126676496922 28.73908183029884 27.144354134150557 22.195297270581378 18-19 22.00036520231438 28.092372629412598 28.57558413323608 21.331678035036937 20-21 22.666073886395406 27.308552427282827 28.416720686823393 21.608652999498375 22-23 22.408767286919094 27.204852179464734 28.314887087971496 22.071493445644673 24-25 22.209152651356227 27.3335213252972 28.346541595426324 22.11078442792025 26-27 22.14834397114056 27.536646109008277 28.27882786122683 22.036182058624334 28-29 22.147291337237867 27.623444783229832 28.218516439021315 22.010747440510986 30-31 22.369923435589644 27.43127344251951 28.16596091680624 22.032842205084602 32-33 22.16520987338373 27.606170920755464 28.14344676654193 22.085172439318875 34-35 22.264811478709497 27.606403896213898 28.13414572616001 21.994638898916598 36-37 22.307146670909685 27.5664167418905 28.087928251188494 22.038508336011322 38-39 22.162225756523103 27.667996284847902 28.13445137297719 22.03532658565181 40-41 22.334031407218745 27.555005121064823 28.011270498146416 22.099692973570015 42-43 22.25215687963153 27.624667687601733 27.88054786010507 22.24262757266166 44-45 22.30388563093384 27.71037427231473 27.737799405339686 22.247940691411742 46-47 22.373129580266575 27.701332575383898 27.566445119607195 22.35909272474233 48-49 22.30772215447109 27.80662982437145 27.54580974744867 22.339838273708793 50-51 22.279073947044257 27.882157590194943 27.497880999996095 22.34088746276471 52-53 22.470354362112037 27.765895091775057 27.384261792389996 22.379488753722914 54-55 22.399870322014287 27.68765889856471 27.451774004191964 22.460696775229042 56-57 22.391705647554648 27.77513914958028 27.431559312556164 22.401595890308904 58-59 22.383659740449424 27.83154212070336 27.3729333832141 22.41186475563311 60-61 22.467115909227402 27.751357391044788 27.43861755748247 22.342909142245336 62-63 22.431726258641795 27.835730114032586 27.371509102248474 22.361034525077145 64-65 22.40647871576217 27.778434448363214 27.363274445235085 22.45181239063953 66-67 22.45318943875592 27.807913864947416 27.250207273310345 22.488689422986322 68-69 22.386750134598827 27.817153353255 27.314949423312335 22.481147088833833 70-71 22.383523104532788 27.63013471257785 27.396489204650535 22.58985297823883 72-73 22.43994598134328 27.70878280896094 27.315644813061702 22.53562639663408 74-75 22.293297924694933 27.802937547936235 27.33395199920346 22.56981252816537 76-77 22.414600638665906 27.72901779257957 27.28606334591009 22.57031822284444 78-79 22.380384535590494 27.764415269498848 27.23653935628531 22.618660838625345 80-81 22.399324066461197 27.775896241861425 27.257214441199135 22.56756525047824 82-83 22.380761463056608 27.768972827499123 27.327162849123678 22.523102860320595 84-85 22.463700548557703 27.749496740728574 27.277249076392835 22.509553634320888 86-87 22.33464613090846 27.769273698771553 27.3595974820707 22.536482688249286 88-89 22.36856267595767 27.74095066904981 27.320994202775182 22.569492452217343 90-91 22.43418302781895 27.771395533068695 27.325460968961384 22.46896047015097 92-93 22.385016130533568 27.73467763112357 27.347718545143962 22.532587693198902 94-95 22.23542997157326 27.788199797699786 27.410765995254128 22.565604235472826 96-97 22.24577306748226 27.808660400478818 27.434572185569657 22.51099434646926 98-99 22.415347005704135 28.407478199139796 27.523795557673754 21.653379237482316 100-101 26.575772866707194 35.49444126355266 28.049279891658657 9.880505978081494 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4801.0 1 4262.5 2 5606.0 3 8040.5 4 10543.0 5 16499.5 6 21847.0 7 25638.5 8 28478.5 9 28403.0 10 26159.0 11 23548.0 12 24459.5 13 31218.5 14 48230.5 15 71805.0 16 91159.0 17 103246.0 18 107955.0 19 106578.5 20 102882.0 21 100115.0 22 102164.0 23 113755.5 24 136418.5 25 169599.5 26 212781.0 27 261551.5 28 315321.5 29 373573.0 30 429532.5 31 485621.0 32 542108.5 33 592874.0 34 639707.0 35 685161.0 36 736503.5 37 786923.0 38 827821.0 39 863720.0 40 900776.0 41 937552.0 42 966847.0 43 993442.0 44 1019560.0 45 1038829.0 46 1050144.5 47 1056581.5 48 1053975.0 49 1040839.0 50 1023921.0 51 998818.0 52 959674.5 53 916146.5 54 869970.0 55 814415.0 56 752905.0 57 687647.0 58 615320.5 59 535890.5 60 453856.0 61 375054.5 62 303311.5 63 239056.5 64 181920.5 65 138215.5 66 106582.0 67 82850.0 68 64160.5 69 47771.5 70 35351.5 71 26338.5 72 19348.0 73 14113.5 74 10298.5 75 7390.0 76 5233.5 77 3642.0 78 2532.5 79 1776.5 80 1250.0 81 897.0 82 672.5 83 502.5 84 355.5 85 233.0 86 159.5 87 118.0 88 78.5 89 49.0 90 36.0 91 27.0 92 22.0 93 17.0 94 10.0 95 7.0 96 7.0 97 5.0 98 1.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.4592790961200236E-4 3 1.6472757600571538E-4 4 2.8827325801000192E-5 5 4.118189400142885E-6 6 0.0 7 4.118189400142885E-6 8 0.001037783728836007 9 0.0 10-11 2.862141633099305E-4 12-13 4.159371294144314E-4 14-15 0.0 16-17 2.0590947000714423E-6 18-19 3.5004609901214523E-4 20-21 0.0 22-23 0.0 24-25 1.1536606331726299E-4 26-27 0.0 28-29 4.290377006153473E-4 30-31 3.057435516877343E-4 32-33 8.65754672134149E-4 34-35 0.0010514786054235102 36-37 5.429058946132794E-5 38-39 0.0015184429406578197 40-41 3.4346677639511433E-4 42-43 1.17592835320834E-4 44-45 1.1227407622023622E-4 46-47 3.057186018370281E-5 48-49 4.416711520212451E-6 50-51 4.465165092669924E-6 52-53 1.1279245052156132E-5 54-55 3.1005892008621186E-4 56-57 5.212647414130168E-4 58-59 4.1556757215105195E-4 60-61 4.1361904277492146E-4 62-63 5.02377549598958E-5 64-65 4.8423043073507394E-5 66-67 1.1526751886641115E-4 68-69 7.210424324271976E-5 70-71 9.58265422575886E-5 72-73 0.0 74-75 1.0371597752931118E-5 76-77 6.785263071355641E-4 78-79 1.600601868985455E-5 80-81 1.3272914305081132E-4 82-83 8.254067005800601E-6 84-85 5.5884318343342915E-6 86-87 5.679377179052787E-6 88-89 1.73369732886652E-5 90-91 5.595012994123204E-5 92-93 3.3060827956139946E-5 94-95 2.1826708599360434E-4 96-97 4.110093469532557E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 956.0 20-21 2736.0 22-23 5345.0 24-25 11351.0 26-27 15837.0 28-29 29251.0 30-31 59418.0 32-33 73772.0 34-35 102063.0 36-37 159504.0 38-39 191673.0 40-41 193468.0 42-43 217442.0 44-45 256570.0 46-47 259288.0 48-49 248556.0 50-51 234835.0 52-53 228062.0 54-55 249758.0 56-57 260571.0 58-59 261842.0 60-61 257692.0 62-63 247927.0 64-65 259261.0 66-67 275558.0 68-69 281812.0 70-71 279975.0 72-73 267170.0 74-75 274979.0 76-77 262913.0 78-79 281970.0 80-81 288101.0 82-83 278788.0 84-85 283215.0 86-87 298584.0 88-89 319122.0 90-91 340006.0 92-93 360314.0 94-95 417309.0 96-97 617501.0 98-99 2059043.0 100-101 1.3268978E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.91623722910708 #Duplication Level Percentage of deduplicated Percentage of total 1 89.03664909143905 73.82583918150522 2 7.271678657907687 12.058804653058179 3 1.9125327075201635 4.75740047055505 4 0.7659325621133587 2.540329840867562 5 0.37370484816335425 1.5493099921990061 6 0.19653830207521664 0.9777729887684742 7 0.12733329709221303 0.7390598508203614 8 0.08131116141144198 0.5393612439172273 9 0.049156440143271585 0.36682803470321185 >10 0.18058481415126873 2.30669828749848 >50 0.003637609798807856 0.20121454637544875 >100 9.116536416559906E-4 0.11186029189458031 >500 1.9247276164241375E-5 0.012679452000555704 >1k 9.607266364087049E-6 0.012841165836721949 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.23637880028577E-6 2 0.0 2.4709136400857308E-5 0.0 0.0 8.23637880028577E-6 3 0.0 2.4709136400857308E-5 0.0 8.23637880028577E-6 8.23637880028577E-6 4 0.0 8.648197740300058E-5 0.0 1.647275760057154E-5 1.2354568200428654E-5 5 0.0 8.648197740300058E-5 0.0 1.647275760057154E-5 1.647275760057154E-5 6 4.530008340157173E-5 8.648197740300058E-5 0.0 2.8827325801000192E-5 3.706370460128596E-5 7 4.530008340157173E-5 9.060016680314346E-5 0.0 3.294551520114308E-5 4.530008340157173E-5 8 4.530008340157173E-5 1.1530930320400077E-4 0.0 6.177284100214327E-5 5.7654651602000385E-5 9 4.530008340157173E-5 2.182640382075729E-4 0.0 1.07072924403715E-4 8.648197740300058E-5 10-11 5.147736750178606E-5 2.182640382075729E-4 0.0 1.420775343049295E-4 8.648197740300058E-5 12-13 5.7654651602000385E-5 2.2238222760771577E-4 0.0 1.461957237050724E-4 9.060016680314346E-5 14-15 6.177284100214327E-5 3.150414891109307E-4 0.0 1.5649119720542962E-4 1.2560477670435797E-4 16-17 1.1942749260414365E-4 3.39750625511788E-4 0.0 1.8120033360628692E-4 1.5443210250535818E-4 18-19 1.1942749260414365E-4 3.58282477812431E-4 0.0 2.0179128060700136E-4 1.6678667070578685E-4 20-21 1.1942749260414365E-4 3.747552354130025E-4 0.0 2.3473679580814444E-4 1.750230495060726E-4 22-23 1.2972296610450087E-4 4.3035079231493146E-4 0.0 2.862141633099305E-4 2.038503753070728E-4 24-25 1.359002502047152E-4 4.880054439169319E-4 0.0 3.58282477812431E-4 2.3473679580814444E-4 26-27 1.359002502047152E-4 5.106554856177177E-4 0.0 4.2417350821471713E-4 2.3473679580814444E-4 28-29 1.359002502047152E-4 5.188918644180034E-4 0.0 8.071651224280054E-4 2.4091407990835874E-4 30-31 1.359002502047152E-4 5.930192736205754E-4 0.0 0.0019334899233670842 2.532686481087874E-4 32-33 1.400184396048581E-4 5.971374630207183E-4 0.0 0.0038752162255344543 2.8209597390978756E-4 34-35 1.4825481840514385E-4 6.939149139240761E-4 0.0 0.0064346709377232575 3.0062782621043056E-4 36-37 1.4825481840514385E-4 7.948105542275768E-4 0.0 0.010423137371761641 3.068051103106449E-4 38-39 1.503139131052153E-4 8.215787853285055E-4 0.0 0.01678779908968247 3.1915967851107356E-4 40-41 1.5237300780528674E-4 8.874698157307916E-4 0.0 0.023675470861421445 3.335733414115737E-4 42-43 1.6472757600571538E-4 9.08060762731506E-4 0.0 0.029628313639327983 3.500460990121452E-4 44-45 1.6884576540585826E-4 0.0010398428235360783 0.0 0.03663747199837117 3.644597619126453E-4 46-47 1.7296395480600115E-4 0.0011489748426398649 0.0 0.04410786757023037 3.788734248131454E-4 48-49 1.7296395480600115E-4 0.0011530930320400078 0.0 0.051273517126478985 3.994643718138598E-4 50-51 1.853185230064298E-4 0.0012436931988431513 0.0 0.058552416891231536 3.994643718138598E-4 52-53 1.894367124065727E-4 0.0012560477670435798 0.0 0.06544420685237065 4.2829169761486E-4 54-55 1.894367124065727E-4 0.001266343240543937 0.0 0.07287342053022841 4.715326863163603E-4 56-57 1.935549018067156E-4 0.0013013478504451516 0.0 0.08003907008647704 4.8388725451678895E-4 58-59 1.935549018067156E-4 0.001303406945145223 0.0 0.08726855157842786 4.859463492168604E-4 60-61 2.244413223077872E-4 0.0013301751762461516 0.0 0.09404503223636299 4.941827280171462E-4 62-63 2.429731746084302E-4 0.0013548843126470092 0.0 0.10062383980309125 5.106554856177177E-4 64-65 2.4503226930850167E-4 0.001503139131052153 0.0 0.107188233706919 5.106554856177177E-4 66-67 2.553277428088589E-4 0.001507257320452296 0.0 0.11377733674714763 5.127145803177891E-4 68-69 2.553277428088589E-4 0.001531966456853153 0.0 0.12082767700019223 5.147736750178606E-4 70-71 2.656232163092161E-4 0.0015525574038538674 0.0 0.12709967945660985 5.16832769717932E-4 72-73 2.923914474101448E-4 0.0015649119720542962 0.0 0.13239773011989367 5.477191902190036E-4 74-75 2.923914474101448E-4 0.0015978574872554394 0.0 0.13672594717944386 5.497782849190751E-4 76-77 3.0474601561057343E-4 0.001657571233557511 0.0 0.14040349031377142 5.559555690192895E-4 78-79 3.0886420501071636E-4 0.0016822803699583684 0.0 0.14408721073219924 5.600737584194323E-4 80-81 3.0886420501071636E-4 0.0016863985593585113 0.0 0.1457921411438584 5.744874213199323E-4 82-83 3.1298239441085923E-4 0.0016946349381587972 0.0 0.14650252881538306 6.09492031221147E-4 84-85 3.171005838110021E-4 0.001709048601059297 0.0 0.14733852126361208 6.09492031221147E-4 86-87 3.1915967851107356E-4 0.0017234622639597974 0.0 0.14770709921492486 6.136102206212898E-4 88-89 3.3357334141157364E-4 0.0017749396314615832 0.0 0.14782240851812883 6.218465994215756E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24925 0.0 42.704792 1 GTATCAA 43275 0.0 33.047466 1 TCAACGC 49555 0.0 28.032183 4 ATCAACG 50155 0.0 27.614256 3 CAACGCA 51060 0.0 27.165594 5 AACGCAG 52600 0.0 26.386219 6 TATCAAC 53760 0.0 26.063087 2 ACGCAGA 62975 0.0 22.025991 7 CGCAGAG 64320 0.0 21.591164 8 GTACATG 66030 0.0 21.414152 1 TACATGG 65405 0.0 21.175734 2 ACATGGG 67665 0.0 19.911377 3 CATGGGG 49375 0.0 17.900642 4 GCAGAGT 78270 0.0 17.557596 9 GAGTACT 40460 0.0 17.156496 12-13 AGAGTAC 66430 0.0 16.964783 10-11 CAGAGTA 74420 0.0 16.134018 10-11 GAGTACA 48015 0.0 14.586307 1 GTGGTAT 15145 0.0 14.466553 1 GTACTTT 48330 0.0 14.376524 14-15 >>END_MODULE