##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138824_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8941643 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.474428692802874 34.0 31.0 34.0 31.0 34.0 2 32.68496785210503 34.0 31.0 34.0 31.0 34.0 3 32.79445667871106 34.0 31.0 34.0 31.0 34.0 4 36.244417161365085 37.0 37.0 37.0 35.0 37.0 5 36.092675361787535 37.0 35.0 37.0 35.0 37.0 6 36.13204508388447 37.0 36.0 37.0 35.0 37.0 7 36.12434258446686 37.0 35.0 37.0 35.0 37.0 8 36.08617476676266 37.0 35.0 37.0 35.0 37.0 9 37.960076688367 39.0 38.0 39.0 35.0 39.0 10-11 37.846526583537276 39.0 38.0 39.0 35.0 39.0 12-13 37.87217824509433 39.0 38.0 39.0 35.0 39.0 14-15 39.24264478015953 40.0 39.0 41.0 36.0 41.0 16-17 39.21777815329912 40.0 39.0 41.0 36.0 41.0 18-19 39.24924994209677 40.0 39.0 41.0 36.0 41.0 20-21 39.25061146102005 40.0 39.0 41.0 36.0 41.0 22-23 39.2152141161516 40.0 39.0 41.0 36.0 41.0 24-25 39.225099274459275 40.0 39.0 41.0 36.0 41.0 26-27 39.10529408181205 40.0 39.0 41.0 36.0 41.0 28-29 39.021974026209776 40.0 39.0 41.0 36.0 41.0 30-31 38.931158578681384 40.0 38.0 41.0 35.0 41.0 32-33 38.85429661007521 40.0 38.0 41.0 35.0 41.0 34-35 38.79386231929597 40.0 38.0 41.0 35.0 41.0 36-37 38.76223712929951 40.0 38.0 41.0 35.0 41.0 38-39 38.69834436753567 40.0 38.0 41.0 35.0 41.0 40-41 38.68630874356333 40.0 38.0 41.0 35.0 41.0 42-43 38.66715993337752 40.0 38.0 41.0 35.0 41.0 44-45 38.607157763663906 40.0 38.0 41.0 35.0 41.0 46-47 38.537833818344836 40.0 38.0 41.0 34.0 41.0 48-49 38.509606476529285 40.0 38.0 41.0 34.0 41.0 50-51 38.446060939502345 40.0 38.0 41.0 34.0 41.0 52-53 38.28635979852314 40.0 38.0 41.0 34.0 41.0 54-55 38.15632015582001 40.0 37.0 41.0 34.0 41.0 56-57 38.02195644341221 40.0 37.0 41.0 33.0 41.0 58-59 37.8710595088134 39.5 37.0 41.0 33.0 41.0 60-61 37.75258373932506 39.0 36.0 41.0 33.0 41.0 62-63 37.56515220369448 39.0 36.0 41.0 33.0 41.0 64-65 37.35515105241029 39.0 35.5 40.0 33.0 41.0 66-67 37.139224290382025 38.5 35.0 40.0 32.5 41.0 68-69 36.87397554218993 38.0 35.0 40.0 32.0 41.0 70-71 36.577947308671256 37.0 35.0 40.0 32.0 41.0 72-73 36.265094789173155 37.0 35.0 39.0 32.0 41.0 74-75 35.86852117794207 36.0 34.5 39.0 31.5 40.5 76-77 33.88524170604849 34.5 32.0 36.5 29.0 39.0 78-79 34.98811111756516 35.0 34.0 37.0 30.5 39.0 80-81 34.947937809148044 35.0 34.0 37.0 31.0 39.0 82-83 34.668983599845205 35.0 34.0 36.5 31.0 39.0 84-85 34.3479280874474 35.0 34.0 36.0 31.0 37.5 86-87 34.159812845122765 35.0 34.0 36.0 31.0 37.0 88-89 33.96148700548089 35.0 34.0 35.5 30.5 37.0 90-91 33.788417736229405 35.0 34.0 35.0 30.0 36.0 92-93 33.70772049833839 35.0 34.0 35.0 30.0 36.0 94-95 33.63469033966941 35.0 34.0 35.0 30.0 36.0 96-97 33.653154069295425 35.0 34.0 35.0 30.5 36.0 98-99 33.686252665736596 35.0 34.0 35.0 31.0 35.0 100-101 32.459957294265934 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 10.0 20 32.0 21 150.0 22 555.0 23 1932.0 24 4941.0 25 11012.0 26 20675.0 27 34758.0 28 52904.0 29 74984.0 30 101609.0 31 136508.0 32 182380.0 33 249957.0 34 370167.0 35 578816.0 36 1056354.0 37 2087031.0 38 2757881.0 39 1199123.0 40 19859.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.08027540352483 20.29350758020646 13.155333980567105 24.470883035701604 2 14.718939824856461 21.5235622435963 41.02490575930166 22.73259217224558 3 18.356011305752197 26.187088882882037 30.43106283710947 25.0258369742563 4 12.141198880619466 17.88967780567058 39.38509897919492 30.584024334515032 5 12.710431760880809 38.22824643778037 36.30033989381785 12.760981907520968 6 29.76809519549074 38.43598461125526 18.99439697593272 12.801523217321284 7 26.33677054653155 32.51274961436058 23.61922747307178 17.531252366036085 8 24.256436988146362 37.03716419901801 21.72625321766928 16.980145595166345 9 25.425875311729623 16.397981892142194 21.37717866839461 36.798964127733576 10-11 23.935411656967727 26.914672614735586 29.503114846106914 19.646800882189773 12-13 24.60097132634606 24.315831818688135 29.592998469623073 21.490198385342737 14-15 21.61642803505374 25.916963904222733 26.876530444661643 25.590077616061883 16-17 21.496362581239264 29.09464737073489 27.60510009178403 21.80388995624182 18-19 21.515739170355904 28.4366124646244 28.990017944326173 21.057630420693517 20-21 22.244137925326775 27.70522084463711 28.78919257099418 21.261448659041925 22-23 21.867118092023215 27.72464171747439 28.69793536653703 21.710304823965362 24-25 21.6943349291332 27.791814457333704 28.81781524803661 21.696035365496492 26-27 21.745896505781936 28.0254385391137 28.666639323747305 21.562025631357056 28-29 21.577741520788773 28.141024819141347 28.655823424419918 21.625410235649962 30-31 21.996531518567693 27.899919211553204 28.642675037850136 21.460874232028974 32-33 21.570836790820678 28.147284070382884 28.607702777768097 21.674176361028348 34-35 21.73301228649325 28.161855701265825 28.656932622121644 21.44819939011928 36-37 21.693611930175795 28.116981250974714 28.607581350350536 21.581825468498952 38-39 21.554417722787285 28.091583834096788 28.73730535737683 21.616693085739097 40-41 21.76542634451413 27.978020286530885 28.67555003249766 21.58100333645732 42-43 21.74336696124908 28.017795925058714 28.530864393903947 21.707972719788255 44-45 21.76881432226887 28.16195071643236 28.368787964911885 21.700446996386884 46-47 21.8407831859501 28.05962767446271 28.146247548215875 21.95334159137131 48-49 21.79130277961107 28.102912567341487 28.215747931791324 21.89003672125612 50-51 21.700376723690585 28.252234323371933 28.17883872034433 21.86855023259315 52-53 21.85469305403487 28.17875016883868 28.156334270094618 21.81022250703183 54-55 21.82004477163127 28.127177172160412 28.111844930274803 21.940933125933515 56-57 21.902838163533144 28.28079850847619 27.95934984281797 21.857013485172693 58-59 21.753770190003742 28.369519032678735 28.107630781969366 21.76907999534815 60-61 21.93320940718716 28.375133293278555 27.97840504613246 21.713252253401823 62-63 21.82253630092709 28.461413146478424 27.95109078022654 21.764959772367938 64-65 21.786200364028815 28.399140891473213 27.970039841391102 21.84461890310687 66-67 21.91279727483584 28.356968298112896 27.80749154040895 21.92274288664231 68-69 21.8996434108872 28.296224782387213 27.93172854413642 21.872403262589167 70-71 21.820573132920725 28.129696188653377 27.996193120323102 22.053537558102796 72-73 21.8959624357026 28.14986953228703 27.9936583027735 21.960509729236865 74-75 21.762552543004375 28.24390459128861 27.97755830680212 22.01598455890489 76-77 21.860319431023065 28.21475911596128 27.861581403160944 22.06334004985471 78-79 21.877367051852616 28.23911857662833 27.85681893093923 22.02669544057983 80-81 21.84817724469059 28.256617662325738 27.84304768898617 22.052157403997498 82-83 21.89497029770846 28.2136679740787 27.962653433275225 21.928708294937614 84-85 22.05607685130695 28.134915754013353 27.861129117589083 21.947878277090613 86-87 21.82571811839345 28.22076704619181 27.941613237056583 22.01190159835816 88-89 21.897136951114483 28.22073173905324 27.89057005822678 21.9915612516055 90-91 21.9433764773364 28.206285759194603 27.942737586894378 21.907600176574615 92-93 21.96449571899225 28.160907618627295 27.955919636000093 21.918677026380358 94-95 21.8312446854257 28.270584983074194 27.96322072093918 21.934949610560928 96-97 21.837967247557398 28.234498831847628 28.0687561128445 21.858777807750478 98-99 22.100499362651835 28.793989964330997 28.114157644971705 20.991353028045463 100-101 25.964479360316652 35.789031088975676 28.849457193137717 9.397032357569952 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1092.0 1 1048.0 2 1650.0 3 2511.0 4 3647.0 5 6091.5 6 8071.0 7 9255.5 8 9822.0 9 9394.5 10 8426.5 11 7523.5 12 8136.0 13 10809.0 14 16857.5 15 24925.0 16 31523.0 17 35951.0 18 37529.0 19 36875.0 20 35806.0 21 35525.0 22 37418.5 23 43055.5 24 53143.0 25 67349.5 26 85759.5 27 106262.0 28 128748.0 29 152749.0 30 175049.5 31 195965.0 32 217867.0 33 239397.0 34 259575.0 35 279838.5 36 301082.5 37 318630.0 38 331267.5 39 342466.5 40 355020.5 41 366344.5 42 373219.0 43 379729.5 44 386004.5 45 390044.0 46 393770.0 47 396680.0 48 392388.0 49 382804.5 50 371490.5 51 353948.0 52 331566.0 53 309410.0 54 287187.5 55 264037.5 56 241113.5 57 216141.0 58 189079.0 59 163463.0 60 138588.5 61 113888.0 62 90451.0 63 70395.5 64 53720.0 65 40723.5 66 30990.5 67 23863.0 68 18363.0 69 13472.5 70 9877.0 71 7279.5 72 5229.5 73 3775.5 74 2806.0 75 1982.5 76 1379.0 77 948.0 78 647.5 79 445.0 80 305.5 81 212.5 82 159.0 83 120.0 84 84.0 85 58.5 86 46.0 87 37.5 88 26.5 89 18.5 90 12.0 91 6.5 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019795019774330063 3 0.0 4 0.003008395660618524 5 3.0195792876096706E-4 6 4.80895960619318E-4 7 0.0 8 0.0 9 0.0 10-11 3.299169962388344E-4 12-13 6.15099484513081E-4 14-15 1.6775440486720393E-5 16-17 0.0 18-19 0.001095995445132399 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.476328586914271E-5 28-29 0.0 30-31 3.364081599836102E-5 32-33 0.0010904948868156246 34-35 7.838877346439635E-4 36-37 3.400164703978261E-4 38-39 0.001895400496697693 40-41 0.0 42-43 1.7415565998057933E-5 44-45 2.3449600360185863E-5 46-47 1.7786418551661424E-5 48-49 5.995502533729348E-6 50-51 3.0303708004136578E-5 52-53 0.0 54-55 0.0034833541148713665 56-57 0.003016502144219844 58-59 0.0015455253494027431 60-61 1.667165106285623E-4 62-63 6.4904210147890094E-6 64-65 9.85245359592881E-5 66-67 5.322063686075945E-5 68-69 1.6852327636752258E-4 70-71 0.0 72-73 0.0 74-75 1.7508467970533948E-4 76-77 0.0 78-79 3.521036179149746E-4 80-81 0.0 82-83 8.864804200853414E-5 84-85 2.9944936502136456E-5 86-87 0.001790777405306195 88-89 0.0 90-91 2.0331845433244647E-4 92-93 4.768638761069501E-5 94-95 2.4248949414266627E-4 96-97 8.241805337788743E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 205.0 20-21 627.0 22-23 1227.0 24-25 2805.0 26-27 4455.0 28-29 9756.0 30-31 21320.0 32-33 27072.0 34-35 37317.0 36-37 60462.0 38-39 72679.0 40-41 71812.0 42-43 80241.0 44-45 94142.0 46-47 94977.0 48-49 90976.0 50-51 85292.0 52-53 82908.0 54-55 90038.0 56-57 95776.0 58-59 95474.0 60-61 95791.0 62-63 91008.0 64-65 93854.0 66-67 99834.0 68-69 97229.0 70-71 94045.0 72-73 88871.0 74-75 90036.0 76-77 89814.0 78-79 94365.0 80-81 96116.0 82-83 90010.0 84-85 88878.0 86-87 93709.0 88-89 99131.0 90-91 102766.0 92-93 104094.0 94-95 111982.0 96-97 170863.0 98-99 715895.0 100-101 5213791.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.81219475196608 #Duplication Level Percentage of deduplicated Percentage of total 1 90.59831856385952 78.65038875366436 2 6.699494178822481 11.631955867832005 3 1.5858304019776064 4.130082531002058 4 0.5473579477078554 1.900693790218032 5 0.24965442375164437 1.0836524227708808 6 0.10707121481572619 0.5577052291747452 7 0.0708604369079745 0.43060850343451407 8 0.03960116991117486 0.2750291579787689 9 0.025971145367027885 0.20291509165806415 >10 0.0742834792743367 0.9851658628585441 >50 0.0011862422527943726 0.07030243898511979 >100 3.3281908685658766E-4 0.0500337176713893 >500 1.8989899146067762E-5 0.008473571790161552 >1k 1.8986365939688976E-5 0.022993060961357826 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.236725398229386E-5 0.0 5 0.0 0.0 0.0 3.3550880973440786E-5 0.0 6 0.0 0.0 0.0 3.3550880973440786E-5 0.0 7 0.0 1.118362699114693E-5 0.0 5.5918134955734646E-5 0.0 8 0.0 1.118362699114693E-5 0.0 6.710176194688157E-5 0.0 9 0.0 7.82853889380285E-5 0.0 6.710176194688157E-5 0.0 10-11 0.0 7.82853889380285E-5 0.0 8.387720243360197E-5 0.0 12-13 0.0 7.82853889380285E-5 0.0 9.506082942474891E-5 0.0 14-15 0.0 1.3420352389376317E-4 0.0 1.0065264292032237E-4 0.0 16-17 0.0 1.56570777876057E-4 0.0 1.0065264292032237E-4 0.0 18-19 0.0 1.7893803185835088E-4 0.0 1.1183626991146929E-4 0.0 20-21 0.0 1.901216588494978E-4 0.0 1.6775440486720394E-4 0.0 22-23 0.0 2.0689709933621817E-4 0.0 2.1248891283179164E-4 0.0 24-25 0.0 2.348561668140855E-4 0.0 2.7399886128309976E-4 0.0 26-27 0.0 2.4603979380523246E-4 0.0 3.6346787721227517E-4 0.0 28-29 0.0 2.4603979380523246E-4 0.0 6.98976686946683E-4 0.0 30-31 0.0 2.9077430176982017E-4 0.0 0.0019683183504418597 0.0 32-33 0.0 2.9077430176982017E-4 0.0 0.004199451935175672 0.0 34-35 0.0 3.8583513119456905E-4 0.0 0.007012134123449124 0.0 36-37 0.0 4.3616145265473023E-4 0.0 0.011675706578757394 0.0 38-39 0.0 4.585287066370241E-4 0.0 0.01906249220640994 0.0 40-41 0.0 5.42405909070626E-4 0.0 0.027813680326982414 0.0 42-43 0.0 5.759567900440669E-4 0.0 0.03515573144667038 0.0 44-45 0.0 6.766094329643893E-4 0.0 0.04377830785684465 0.0 46-47 0.0 7.493030084068442E-4 0.0 0.05335149256126642 0.0 48-49 0.0 7.493030084068442E-4 0.0 0.06271218835285641 0.0 50-51 0.0 8.164047703537259E-4 0.0 0.07184361979112788 0.0 52-53 0.0 8.275883973448728E-4 0.0 0.08022574822099249 0.0 54-55 0.0 8.275883973448728E-4 0.0 0.08896575271457383 0.0 56-57 0.0 8.387720243360196E-4 0.0 0.09726959575550041 0.0 58-59 0.0 8.387720243360196E-4 0.0 0.10510931827629441 0.0 60-61 0.0 8.499556513271666E-4 0.0 0.11299936711854858 0.0 62-63 0.0 8.499556513271666E-4 0.0 0.12050917264310373 0.0 64-65 0.0 9.058737862829013E-4 0.0 0.12815877350504823 0.0 66-67 0.0 9.058737862829013E-4 0.0 0.1354169474223026 0.0 68-69 0.0 9.28241040265195E-4 0.0 0.14242348973225616 0.0 70-71 0.0 9.39424667256342E-4 0.0 0.1492566858238469 0.0 72-73 0.0 9.562001077430625E-4 0.0 0.15480935662495138 0.0 74-75 0.0 9.897509887165032E-4 0.0 0.1592045220324721 0.0 76-77 0.0 0.0010288936831855174 0.0 0.16277769085614355 0.0 78-79 0.0 0.0010512609371678113 0.0 0.16640118600127515 0.0 80-81 0.0 0.0010512609371678113 0.0 0.16807313823645165 0.0 82-83 0.0 0.0010736281911501054 0.0 0.1685204833160975 0.0 84-85 0.0 0.001095995445132399 0.0 0.16895664476875222 0.0 86-87 0.0 0.0011071790721235459 0.0 0.16923064363003532 0.0 88-89 0.0 0.0011407299530969868 0.0 0.16935366352693795 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9125 0.0 38.890533 1 GTATCAA 15045 0.0 31.256397 1 TCAACGC 16080 0.0 28.07845 4 ATCAACG 16325 0.0 27.759113 3 CAACGCA 16575 0.0 27.264578 5 AACGCAG 17165 0.0 26.400229 6 TATCAAC 18075 0.0 25.578897 2 TACATGG 23275 0.0 22.530622 2 ACGCAGA 20190 0.0 22.44452 7 GTACATG 24105 0.0 22.221378 1 CGCAGAG 20485 0.0 22.080639 8 ACATGGG 23770 0.0 21.570427 3 CATGGGG 16685 0.0 19.746046 4 CTTATAC 6420 0.0 18.620186 1 GCAGAGT 26090 0.0 17.336983 9 GAGTACT 14270 0.0 16.563879 12-13 AGAGTAC 22560 0.0 16.200401 10-11 GAGTACA 16865 0.0 16.0039 1 CAGAGTA 24840 0.0 15.970965 10-11 ATGGGGG 10615 0.0 15.812758 5 >>END_MODULE