##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138822_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13853944 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22657872732848 33.0 31.0 34.0 30.0 34.0 2 32.44919894291474 34.0 31.0 34.0 31.0 34.0 3 32.55033960004458 34.0 31.0 34.0 31.0 34.0 4 36.078608806272065 37.0 35.0 37.0 35.0 37.0 5 35.8887806244922 37.0 35.0 37.0 35.0 37.0 6 35.92317278025666 37.0 35.0 37.0 35.0 37.0 7 35.90994412854563 37.0 35.0 37.0 35.0 37.0 8 35.86389868473555 37.0 35.0 37.0 35.0 37.0 9 37.69019638017881 39.0 37.0 39.0 35.0 39.0 10-11 37.551299471110895 39.0 37.0 39.0 35.0 39.0 12-13 37.57251404365428 39.0 37.0 39.0 35.0 39.0 14-15 38.86227499548143 40.0 38.0 41.0 36.0 41.0 16-17 38.82052955461636 40.0 38.0 41.0 35.5 41.0 18-19 38.84643531834689 40.0 38.0 41.0 35.0 41.0 20-21 38.842954481164796 40.0 38.0 41.0 35.0 41.0 22-23 38.805227316561286 40.0 38.0 41.0 35.0 41.0 24-25 38.804779495320936 40.0 38.0 41.0 35.0 41.0 26-27 38.66884394948917 40.0 38.0 41.0 35.0 41.0 28-29 38.57870462074023 40.0 38.0 41.0 34.5 41.0 30-31 38.47688288688516 40.0 38.0 41.0 34.0 41.0 32-33 38.39603756822481 40.0 38.0 41.0 34.0 41.0 34-35 38.327029641815045 40.0 38.0 41.0 34.0 41.0 36-37 38.29630415526715 40.0 38.0 41.0 34.0 41.0 38-39 38.22620152535121 40.0 38.0 41.0 34.0 41.0 40-41 38.19769175954329 40.0 38.0 41.0 34.0 41.0 42-43 38.16565542814337 40.0 38.0 41.0 34.0 41.0 44-45 38.096790927531586 40.0 38.0 41.0 33.0 41.0 46-47 38.012207232056724 40.0 37.0 41.0 33.0 41.0 48-49 37.97743284537691 40.0 37.0 41.0 33.0 41.0 50-51 37.899113776863835 40.0 37.0 41.0 33.0 41.0 52-53 37.71726047415926 39.5 37.0 41.0 33.0 41.0 54-55 37.55905166764508 39.0 36.0 40.5 32.5 41.0 56-57 37.405503119988055 39.0 36.0 40.0 32.0 41.0 58-59 37.23449811007836 39.0 35.5 40.0 32.0 41.0 60-61 37.09696662396405 39.0 35.0 40.0 32.0 41.0 62-63 36.886616557780776 38.5 35.0 40.0 31.5 41.0 64-65 36.656049424020324 38.0 35.0 40.0 31.0 41.0 66-67 36.42023768393159 37.5 35.0 40.0 31.0 41.0 68-69 36.14381573167472 37.0 35.0 39.5 31.0 41.0 70-71 35.83880373015123 36.5 34.0 39.0 31.0 41.0 72-73 35.52992795553468 36.0 34.0 39.0 30.5 40.0 74-75 35.134679503607344 35.5 34.0 38.5 30.0 40.0 76-77 33.124107058844054 34.0 31.0 36.0 27.5 39.0 78-79 34.312814115860036 35.0 33.5 37.0 29.5 39.0 80-81 34.3265285904751 35.0 34.0 36.5 30.0 39.0 82-83 34.07651890966046 35.0 34.0 36.0 30.0 38.0 84-85 33.785489355387895 35.0 33.0 36.0 29.0 37.0 86-87 33.61676423847979 35.0 33.0 35.0 29.0 37.0 88-89 33.4432477375188 35.0 33.0 35.0 29.0 36.0 90-91 33.28255151140154 35.0 33.0 35.0 29.0 36.0 92-93 33.21702699407463 35.0 33.0 35.0 29.0 36.0 94-95 33.16244493737965 35.0 33.0 35.0 29.0 35.5 96-97 33.209946692360404 35.0 33.0 35.0 29.0 35.0 98-99 33.27999507360886 34.5 33.0 35.0 29.5 35.0 100-101 32.02652155438313 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 7.0 19 18.0 20 75.0 21 356.0 22 1371.0 23 4613.0 24 11828.0 25 25026.0 26 45987.0 27 74985.0 28 112286.0 29 155897.0 30 210406.0 31 278645.0 32 370590.0 33 509960.0 34 748452.0 35 1161509.0 36 2024694.0 37 3364486.0 38 3451893.0 39 1284476.0 40 16383.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.036686448277834 20.203459751244843 13.3556913468107 24.404162453666622 2 15.16466592467888 21.50053375335838 40.39584295315278 22.938957368809966 3 18.7701855875843 25.876645668554744 30.10685621365295 25.246312530208005 4 12.84246827488297 17.67953264732607 38.48519225055675 30.992806827234215 5 13.321384349733195 37.754002519724054 35.68756605541631 13.237047075126437 6 30.544641856263794 37.64974220603552 18.659881377747034 13.145734559953654 7 26.817294771799276 32.17333634378773 23.322131228479055 17.687237655933934 8 24.5857786057169 36.7677319902549 21.347314526462643 17.29917487756555 9 25.73283824447392 16.365772808089886 21.098973692978692 36.80241525445751 10-11 24.501620029720847 26.523388248626517 28.989023858783575 19.985967862869064 12-13 25.033988685476082 24.005749293970098 29.152738854652576 21.807523165901237 14-15 22.12118638736755 25.4717060463772 26.3811043507802 26.026003215475047 16-17 22.06815979622842 28.583116836620675 27.108894044901582 22.239829322249317 18-19 22.119843543242588 28.003065008319744 28.428316686632314 21.448774761805357 20-21 22.818127216996068 27.28802945108097 28.198968256440292 21.69487507548267 22-23 22.562654287231343 27.180891863668833 28.050051238069866 22.206402611029954 24-25 22.32766127472517 27.260082419850807 28.1552248345987 22.25703147082532 26-27 22.30365722510314 27.43065647294441 28.07432736873566 22.191358933216794 28-29 22.251529846035336 27.54223104454952 28.022679127338513 22.18355998207663 30-31 22.485891662670113 27.410592581850622 27.943728504372313 22.15978725110695 32-33 22.267227995194073 27.52435177900376 27.942910553587357 22.265509672214815 34-35 22.388506919980887 27.521047686981458 27.942968113274958 22.147477279762697 36-37 22.406474946616726 27.50617694275594 27.858604548605147 22.22874356202219 38-39 22.289218426530553 27.607360236386548 27.909839407866272 22.19358192921662 40-41 22.47030138232845 27.480799705372178 27.819905227451947 22.228993684847424 42-43 22.374919293506846 27.557307655570078 27.681662154760595 22.38611089616248 44-45 22.472305383271543 27.599566247865177 27.555375475195078 22.372752893668206 46-47 22.490963754327467 27.60562068436498 27.431645203522585 22.471770357784965 48-49 22.434278849869237 27.67437404362889 27.40455226668211 22.486794839819762 50-51 22.415450360881238 27.748171179496676 27.389241101171997 22.44713735845009 52-53 22.588017748092845 27.622146255254098 27.274864989236974 22.514971007416086 54-55 22.551900527725792 27.528184343420897 27.323366538687203 22.596548590166105 56-57 22.532505281256604 27.63586345982964 27.294762493499025 22.536868765414727 58-59 22.514603685058475 27.677096144086523 27.246116717518255 22.562183453336747 60-61 22.602129602705332 27.608541781642966 27.3015249461114 22.487803669540302 62-63 22.57027772898622 27.65874564414861 27.232243873111333 22.53873275375384 64-65 22.559529609090063 27.619393465310267 27.193110162388145 22.627966763211525 66-67 22.608110420731396 27.637760770676934 27.11897198518573 22.635156823405943 68-69 22.54693825774932 27.624964590658195 27.16777317468105 22.660323976911435 70-71 22.551852016630374 27.47506161304451 27.211560138282604 22.761526232042513 72-73 22.586251076619 27.503815543708495 27.18155183641277 22.728381543259733 74-75 22.5024042616874 27.58792577150182 27.157237387513444 22.752432579297338 76-77 22.66261900837881 27.515568310018452 27.080255364201882 22.741557317400854 78-79 22.579976682117213 27.543064367293884 27.084559834834298 22.792399115754606 80-81 22.599769185696907 27.563361776555833 27.07653316877831 22.760335868968944 82-83 22.585788832855965 27.57154493087979 27.124233135655935 22.718433100608312 84-85 22.722065252516142 27.499003738357985 27.10322334226854 22.67570766685733 86-87 22.564009998340676 27.518627674095832 27.16920642310295 22.74815590446055 88-89 22.62462589480038 27.48437163405028 27.141350684677068 22.74965178647227 90-91 22.655214643715524 27.50087645722546 27.12292701391419 22.720981885144827 92-93 22.630499706848443 27.478006113966234 27.14502827209878 22.74646590708653 94-95 22.560217548300248 27.501729860436747 27.193515619796177 22.744536971466832 96-97 22.572701567604778 27.521828969408052 27.233819991165266 22.671649471821905 98-99 22.804299270541154 28.086579568902952 27.277553111835402 21.83156804872049 100-101 27.10123067809554 35.09735499402238 27.82175082743902 9.979663500443053 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1838.0 1 1696.5 2 2503.0 3 3668.0 4 4952.0 5 8150.5 6 10906.5 7 12658.0 8 13711.5 9 13272.0 10 11961.0 11 10729.5 12 11428.0 13 14839.5 14 22796.0 15 33723.5 16 42723.0 17 48649.0 18 51784.5 19 52212.0 20 51576.5 21 51823.5 22 54687.0 23 62492.5 24 75876.5 25 94602.5 26 118876.5 27 145426.0 28 175088.5 29 207477.5 30 237798.5 31 268741.5 32 301017.5 33 332719.5 34 365491.0 35 396786.0 36 429448.0 37 460312.0 38 486648.0 39 511614.0 40 535665.0 41 560167.0 42 579105.0 43 593347.5 44 607103.5 45 618730.0 46 625440.0 47 625159.0 48 620490.0 49 612483.0 50 602027.5 51 587412.5 52 563262.5 53 536127.5 54 508501.0 55 475954.0 56 440104.0 57 400091.5 58 356922.0 59 311137.5 60 264089.0 61 220332.5 62 180097.0 63 142751.0 64 109013.0 65 82770.0 66 63577.5 67 49526.0 68 38587.5 69 28716.0 70 20965.5 71 15344.5 72 11144.5 73 7915.5 74 5540.5 75 3854.0 76 2663.5 77 1809.0 78 1206.5 79 826.5 80 599.0 81 428.5 82 310.5 83 211.0 84 134.0 85 93.0 86 69.5 87 48.5 88 31.5 89 19.5 90 11.5 91 9.0 92 6.0 93 3.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012054329077698018 3 0.0 4 0.001818976603341258 5 3.3203541172102327E-4 6 3.6812621734287366E-4 7 0.0 8 0.0 9 0.0 10-11 2.2737207541765724E-4 12-13 4.980531175815349E-4 14-15 2.5263563935295246E-5 16-17 0.0 18-19 0.0010682878464067706 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.4177070169057745E-5 28-29 0.0 30-31 5.0692405759830454E-5 32-33 8.936652754913932E-4 34-35 7.368651596582522E-4 36-37 4.3673864572190454E-4 38-39 0.0016221239335275834 40-41 7.480900885993015E-6 42-43 1.5113573212944655E-5 44-45 1.1465216882348416E-5 46-47 1.5484787067725233E-5 48-49 1.5683434885534646E-5 50-51 1.190941886561515E-5 52-53 8.032409809692934E-6 54-55 0.002999206429485792 56-57 0.0027703240418805487 58-59 0.0014891920323971432 60-61 1.606530020296393E-4 62-63 8.566183986469884E-6 64-65 9.109906993489063E-5 66-67 3.5176580277089444E-5 68-69 9.812687832128818E-5 70-71 0.0 72-73 0.0 74-75 1.257006999294307E-4 76-77 4.722320249720073E-6 78-79 3.3539767407462704E-4 80-81 0.0 82-83 1.5319719834940395E-4 84-85 1.0034108443125294E-5 86-87 0.001319495376060258 88-89 0.0 90-91 9.489452684218217E-5 92-93 1.6113127907781775E-5 94-95 1.698086842242638E-4 96-97 1.6817385005384085E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 405.0 20-21 1112.0 22-23 2203.0 24-25 5098.0 26-27 8246.0 28-29 18208.0 30-31 42855.0 32-33 53119.0 34-35 72747.0 36-37 115106.0 38-39 134748.0 40-41 132774.0 42-43 144206.0 44-45 165106.0 46-47 165747.0 48-49 159557.0 50-51 147901.0 52-53 143751.0 54-55 154752.0 56-57 160021.0 58-59 160021.0 60-61 155644.0 62-63 147375.0 64-65 152131.0 66-67 160723.0 68-69 162582.0 70-71 160061.0 72-73 150559.0 74-75 152187.0 76-77 150140.0 78-79 158972.0 80-81 159923.0 82-83 152485.0 84-85 150427.0 86-87 158503.0 88-89 167437.0 90-91 174067.0 92-93 178262.0 94-95 195753.0 96-97 294305.0 98-99 1115179.0 100-101 7569546.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.41822811905699 #Duplication Level Percentage of deduplicated Percentage of total 1 89.54541690017554 75.5926543089508 2 7.118197526983515 12.018112452588035 3 1.8334636353343818 4.643332542469601 4 0.6872417017424403 2.32062907002489 5 0.3058633680218026 1.2910221787463807 6 0.17443739376777118 0.8835417419748887 7 0.09733363409472046 0.5751713048665454 8 0.05554375881501378 0.3751124561788572 9 0.04568988523481048 0.3471353239037189 >10 0.1334795299937917 1.7188322558097313 >50 0.002751924479330324 0.15547799723404365 >100 5.658734079837798E-4 0.07198731602762742 >500 1.4867948796239814E-5 0.0069910512248089135 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.330896674622043E-5 0.0 7.218161124370071E-6 0.0 3 0.0 5.05271278705905E-5 0.0 7.218161124370071E-6 0.0 4 7.218161124370071E-6 1.01054255741181E-4 0.0 1.4436322248740142E-5 0.0 5 7.218161124370071E-6 1.01054255741181E-4 0.0 2.1654483373110215E-5 0.0 6 7.218161124370071E-6 1.01054255741181E-4 0.0 2.1654483373110215E-5 7.218161124370071E-6 7 7.218161124370071E-6 1.01054255741181E-4 0.0 5.05271278705905E-5 7.218161124370071E-6 8 7.218161124370071E-6 1.3714506136303136E-4 0.0 5.05271278705905E-5 7.218161124370071E-6 9 7.218161124370071E-6 2.3098115597984227E-4 0.0 1.1549057798992114E-4 2.1654483373110215E-5 10-11 2.8872644497480284E-5 2.3098115597984227E-4 0.0 1.4075414192521639E-4 2.1654483373110215E-5 12-13 5.05271278705905E-5 2.3098115597984227E-4 0.0 1.8045402810925177E-4 2.8872644497480284E-5 14-15 7.579069180588575E-5 2.851173644126178E-4 0.0 1.8767218923362183E-4 3.609080562185036E-5 16-17 9.744517517899597E-5 2.887264449748028E-4 0.0 2.2376299485547222E-4 5.05271278705905E-5 18-19 1.1549057798992114E-4 2.995536866613579E-4 0.0 2.5985380047732255E-4 5.4136208432775533E-5 20-21 1.1549057798992114E-4 3.248172505966532E-4 0.0 3.212081700344682E-4 6.496345011933064E-5 22-23 1.2992690023866127E-4 3.6451713678068863E-4 0.0 3.8256253959161377E-4 6.496345011933064E-5 24-25 1.840631086714368E-4 4.3308966746220427E-4 0.0 4.6196231195968454E-4 6.496345011933064E-5 26-27 2.0932667260673205E-4 4.763986342084247E-4 0.0 6.06325534447086E-4 6.496345011933064E-5 28-29 2.1293575316891708E-4 4.8000771477060974E-4 0.0 0.0012848326801378727 6.496345011933064E-5 30-31 2.1654483373110213E-4 5.702347288252356E-4 0.0 0.0036920894151152915 6.496345011933064E-5 32-33 2.2376299485547222E-4 5.810619705117906E-4 0.0 0.0081998310372844 6.496345011933064E-5 34-35 2.3459023654202733E-4 6.676799040042315E-4 0.0 0.0142053410927603 7.21816112437007E-5 36-37 2.4541747822858244E-4 7.506887569344873E-4 0.0 0.022596453399840507 7.21816112437007E-5 38-39 2.4541747822858244E-4 8.228703681781881E-4 0.0 0.03569741584057219 7.21816112437007E-5 40-41 2.526356393529525E-4 9.527972684168494E-4 0.0 0.049058232081781186 7.21816112437007E-5 42-43 2.526356393529525E-4 9.816699129143298E-4 0.0 0.059997355265764024 7.579069180588575E-5 44-45 2.526356393529525E-4 0.0010971604909042506 0.0 0.07201920261840239 9.022701405462589E-5 46-47 2.526356393529525E-4 0.0011982147466454319 0.0 0.08523565563712399 1.01054255741181E-4 48-49 2.526356393529525E-4 0.0012054329077698018 0.0 0.09699764918928502 1.0827241686555107E-4 50-51 2.5985380047732255E-4 0.0013064871635109828 0.0 0.10811722640137711 1.0827241686555107E-4 52-53 2.7789920328824774E-4 0.001313705324635353 0.0 0.11883258659050448 1.1188149742773611E-4 54-55 2.8150828385043277E-4 0.001328141646884093 0.0 0.12939636539602006 1.1909965855210618E-4 56-57 2.8150828385043277E-4 0.0013425779691328332 0.0 0.13977969017342642 1.2270873911429122E-4 58-59 2.8150828385043277E-4 0.0013461870496950183 0.0 0.14925713572972432 1.2270873911429122E-4 60-61 2.8150828385043277E-4 0.001403932338689979 0.0 0.1589547352003155 1.2270873911429122E-4 62-63 2.8150828385043277E-4 0.0014544594665605692 0.0 0.16789081867228567 1.2270873911429122E-4 64-65 2.8150828385043277E-4 0.0015879954473614157 0.0 0.17667171168008186 1.2270873911429122E-4 66-67 2.887264449748028E-4 0.001595213608485786 0.0 0.18542734112394277 1.2631781967647625E-4 68-69 3.03162767223543E-4 0.001638522575232006 0.0 0.1942731975818583 1.3714506136303136E-4 70-71 3.03162767223543E-4 0.0016565679780429312 0.0 0.20236114712171493 1.443632224874014E-4 72-73 3.03162767223543E-4 0.0016782224614160417 0.0 0.20810680337671353 1.515813836117715E-4 74-75 3.03162767223543E-4 0.001721531428162262 0.0 0.21278056270474316 1.515813836117715E-4 76-77 3.03162767223543E-4 0.0017864948782815927 0.0 0.21700318696249965 1.515813836117715E-4 78-79 3.03162767223543E-4 0.001826194764465628 0.0 0.22090099396965945 1.515813836117715E-4 80-81 3.03162767223543E-4 0.001826194764465628 0.0 0.22289320643998561 1.5879954473614155E-4 82-83 3.03162767223543E-4 0.001829803845027813 0.0 0.22351035921611925 1.6601770586051164E-4 84-85 3.03162767223543E-4 0.0018370220061521832 0.0 0.22415638463675036 1.6601770586051164E-4 86-87 3.03162767223543E-4 0.0018550674089631083 0.0 0.2245136836124067 1.6601770586051164E-4 88-89 3.03162767223543E-4 0.001941685342455549 0.0 0.22464361051264536 1.6601770586051164E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12475 0.0 41.726795 1 GTATCAA 21055 0.0 32.425777 1 TCAACGC 24155 0.0 27.34815 4 ATCAACG 24540 0.0 26.86893 3 CAACGCA 24945 0.0 26.432121 5 AACGCAG 25790 0.0 25.581963 6 TATCAAC 26490 0.0 25.355486 2 GTACATG 37150 0.0 21.960415 1 TACATGG 37575 0.0 21.36324 2 ACGCAGA 31155 0.0 21.216324 7 CGCAGAG 31455 0.0 20.987936 8 ACATGGG 37590 0.0 20.787636 3 CATGGGG 28195 0.0 19.144497 4 GCAGAGT 39465 0.0 16.707373 9 AGAGTAC 34080 0.0 16.096695 10-11 GAGTACT 20200 0.0 15.97633 12-13 GAGTACA 26810 0.0 15.566372 1 CAGAGTA 37895 0.0 15.502873 10-11 ATGGGGG 17960 0.0 15.32331 5 TATACTG 7340 0.0 14.395054 5 >>END_MODULE