##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138820_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10619856 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43291001309245 34.0 31.0 34.0 31.0 34.0 2 32.64208488326019 34.0 31.0 34.0 31.0 34.0 3 32.73989609651957 34.0 31.0 34.0 31.0 34.0 4 36.20855885428202 37.0 37.0 37.0 35.0 37.0 5 36.05783967315564 37.0 35.0 37.0 35.0 37.0 6 36.09442811653943 37.0 35.0 37.0 35.0 37.0 7 36.07879852608171 37.0 35.0 37.0 35.0 37.0 8 36.03639587956748 37.0 35.0 37.0 35.0 37.0 9 37.880438680147826 39.0 38.0 39.0 35.0 39.0 10-11 37.758447525088854 39.0 37.5 39.0 35.0 39.0 12-13 37.78029678556847 39.0 37.5 39.0 35.0 39.0 14-15 39.13768364655792 40.0 38.5 41.0 36.0 41.0 16-17 39.10832430307906 40.0 38.0 41.0 36.0 41.0 18-19 39.133873331239144 40.0 38.5 41.0 36.0 41.0 20-21 39.129032166665056 40.0 39.0 41.0 36.0 41.0 22-23 39.093150346748175 40.0 39.0 41.0 36.0 41.0 24-25 39.099087840792535 40.0 39.0 41.0 36.0 41.0 26-27 38.97800744924977 40.0 38.5 41.0 36.0 41.0 28-29 38.89128766645603 40.0 38.0 41.0 35.0 41.0 30-31 38.794407902198486 40.0 38.0 41.0 35.0 41.0 32-33 38.714332669095015 40.0 38.0 41.0 35.0 41.0 34-35 38.65050778257033 40.0 38.0 41.0 35.0 41.0 36-37 38.618891363693294 40.0 38.0 41.0 35.0 41.0 38-39 38.55230913336355 40.0 38.0 41.0 35.0 41.0 40-41 38.522479605654894 40.0 38.0 41.0 34.5 41.0 42-43 38.49322709343765 40.0 38.0 41.0 34.0 41.0 44-45 38.426713428482884 40.0 38.0 41.0 34.0 41.0 46-47 38.34599566861566 40.0 38.0 41.0 34.0 41.0 48-49 38.30926258075873 40.0 38.0 41.0 34.0 41.0 50-51 38.23962790091622 40.0 38.0 41.0 34.0 41.0 52-53 38.06874801684886 40.0 37.0 41.0 33.0 41.0 54-55 37.92889309585149 40.0 37.0 41.0 33.0 41.0 56-57 37.78511902157666 39.5 37.0 41.0 33.0 41.0 58-59 37.62645643967218 39.0 36.0 41.0 33.0 41.0 60-61 37.49548894540392 39.0 36.0 41.0 33.0 41.0 62-63 37.296756940187244 39.0 35.5 40.0 32.0 41.0 64-65 37.073233365078124 39.0 35.0 40.0 32.0 41.0 66-67 36.842089498818794 38.0 35.0 40.0 32.0 41.0 68-69 36.56963605045595 37.5 35.0 40.0 31.5 41.0 70-71 36.266113251309626 37.0 35.0 39.5 31.0 41.0 72-73 35.95169948988563 36.5 35.0 39.0 31.0 41.0 74-75 35.55698225819761 36.0 34.0 39.0 31.0 40.0 76-77 33.56385413093829 34.5 32.0 36.5 28.0 39.0 78-79 34.71019702567477 35.0 34.0 37.0 30.0 39.0 80-81 34.694811611169456 35.0 34.0 37.0 30.5 39.0 82-83 34.425351497121355 35.0 34.0 36.5 30.0 39.0 84-85 34.11429614043192 35.0 34.0 36.0 30.0 37.0 86-87 33.92647681743189 35.0 34.0 36.0 30.0 37.0 88-89 33.73597706588975 35.0 34.0 35.0 30.0 37.0 90-91 33.56369886646597 35.0 33.0 35.0 30.0 36.0 92-93 33.482730386079155 35.0 33.0 35.0 30.0 36.0 94-95 33.41531432891583 35.0 33.0 35.0 30.0 36.0 96-97 33.44538178982169 35.0 33.0 35.0 30.0 36.0 98-99 33.49410280030678 35.0 33.0 35.0 30.0 35.0 100-101 32.22952535686299 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 9.0 20 41.0 21 180.0 22 778.0 23 2787.0 24 7354.0 25 16471.0 26 31115.0 27 51466.0 28 77412.0 29 108806.0 30 146473.0 31 192200.0 32 253706.0 33 346256.0 34 506283.0 35 791465.0 36 1429871.0 37 2647161.0 38 3004917.0 39 990934.0 40 14169.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.961341095397145 20.227637738214153 13.305820719226325 24.505200447162373 2 14.646640134873715 21.183163912543016 41.5174159148572 22.65278003772607 3 18.33477779736373 25.85864629426237 30.33759591467153 25.468979993702362 4 12.311829379603715 17.58584708524871 39.162051201599766 30.940272333547814 5 12.863592658894216 38.04186079665968 36.21326996500975 12.88127657943635 6 30.372165827087848 38.24968038502388 18.564326345228995 12.813827442659278 7 26.502590995584118 32.38070271385977 23.593615581981524 17.52309070857458 8 24.03906418316783 37.70303476807972 21.334724312646046 16.923176736106402 9 25.493857920484043 16.25749916006394 21.359639904721874 36.88900301473014 10-11 24.058063308405732 26.79842938987113 29.427922614898815 19.715584686824318 12-13 24.608830891769664 24.32507788871155 29.519912310962184 21.546178908556605 14-15 21.632099573492273 25.787170624606958 26.857011082402305 25.72371871949846 16-17 21.598075341134567 28.879402884558885 27.60923500280983 21.91328677149671 18-19 21.62865683008952 28.348927390105473 28.930014460791032 21.092401319013977 20-21 22.23810647076355 27.60694324186511 28.851531634859718 21.30341865251162 22-23 21.942187727413582 27.58194328578701 28.70814183407877 21.767727152720642 24-25 21.74019333932659 27.64693407825681 28.80955835677349 21.80331422564311 26-27 21.797197732773505 27.779366150992622 28.68388149168643 21.739554624547438 28-29 21.74503392029526 27.895211800044073 28.67229235676821 21.68746192289246 30-31 21.94727361873558 27.758944755086024 28.633999200600634 21.65978242557776 32-33 21.751948540101985 27.88115619289424 28.601528572678127 21.765366694325653 34-35 21.865987639975327 27.92206610539421 28.61421819867862 21.59772805595184 36-37 21.852247820324042 27.869438571346457 28.548524060932557 21.729789547396944 38-39 21.735278528678283 27.975338172724694 28.62554540597923 21.66383789261779 40-41 21.93511280966743 27.872743235251697 28.513786482430753 21.67835747265012 42-43 21.821417797276744 27.966923653894643 28.369564173162072 21.84209437566654 44-45 21.924061482772835 28.01443184321137 28.250509430327043 21.810997243688753 46-47 21.94654077371163 28.034380137077804 28.070908836989812 21.948170252220763 48-49 21.935741138475997 28.075819685056754 28.074553218028658 21.91388595843859 50-51 21.88849242571474 28.208943467142383 28.02149730539632 21.881066801746556 52-53 22.049173546337066 28.10197444486172 27.91087627810871 21.937975730692504 54-55 21.988082067445596 28.03548884762647 27.996228251996904 21.98020083293103 56-57 21.984389135298958 28.131054060519954 27.98593976298992 21.89861704119117 58-59 21.98925655481385 28.16960625339516 27.9237409691379 21.917396222653096 60-61 22.01444537305606 28.144762015961195 27.958561730822808 21.882230880159938 62-63 21.9956495924193 28.190863834758545 27.921336118399797 21.892150454422357 64-65 21.964628443394332 28.175392141183174 27.918686871255264 21.941292544167222 66-67 22.018779791666244 28.19586155247929 27.817834860797564 21.967523795056902 68-69 21.976212287770082 28.19246509769991 27.875914678154263 21.955407936375746 70-71 21.955171207510066 28.048982730757636 27.916672104453035 22.079173957279266 72-73 21.99223645000408 28.066576054853755 27.87829799326516 22.062889501877006 74-75 21.89710913984025 28.158901713339684 27.879827637370656 22.06416150944941 76-77 22.028552001011537 28.11574918477509 27.78342937674977 22.072269437463607 78-79 21.96319252578781 28.103559089028163 27.824510926096146 22.108737459087873 80-81 21.950689474020578 28.175059695633465 27.816105631839054 22.0581451985069 82-83 22.00113761365012 28.133944273173235 27.87076682235339 21.994151290823265 84-85 22.099417603876947 28.115719399435168 27.801489277539442 21.983373719148442 86-87 21.95239153523414 28.11793350493402 27.89980222514958 22.029872734682268 88-89 21.993026793438595 28.09099142642191 27.877959000342884 22.038022779796616 90-91 21.98741485969071 28.1572563946034 27.87350348345098 21.981825262254905 92-93 22.01267237121197 28.12118708500414 27.89752917266959 21.968611371114303 94-95 21.881971498929875 28.17545989782323 27.937789279306962 22.004779323939935 96-97 21.918190380807662 28.20643000685092 27.967095625131005 21.908283987210414 98-99 22.172980263997143 28.74511660730345 28.025452492184165 21.056450636515237 100-101 22.87589696117271 31.418361795437434 25.1927569013007 20.512984342089155 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2010.0 1 1708.0 2 2203.0 3 3258.0 4 4472.5 5 7292.5 6 9703.0 7 11443.5 8 12651.5 9 12495.5 10 11148.0 11 9519.5 12 9910.0 13 13022.5 14 20404.5 15 30128.0 16 37586.0 17 41736.0 18 43351.0 19 43259.0 20 42474.5 21 42408.5 22 45166.0 23 52329.5 24 64329.0 25 80604.0 26 99464.0 27 118806.0 28 139076.0 29 160056.5 30 180746.0 31 203887.5 32 228305.0 33 251346.0 34 273804.0 35 295235.0 36 317885.5 37 338175.0 38 356609.0 39 373436.0 40 388001.0 41 402134.5 42 411768.0 43 419855.5 44 427038.0 45 433989.0 46 438124.0 47 438575.5 48 436687.0 49 428837.5 50 418243.5 51 402597.0 52 380396.0 53 358546.5 54 336386.0 55 310477.5 56 282701.5 57 253942.5 58 223588.5 59 192986.0 60 161367.0 61 131049.0 62 104457.5 63 80674.0 64 60551.0 65 45422.0 66 34442.0 67 26271.0 68 19845.5 69 14470.0 70 10481.0 71 7715.0 72 5699.5 73 4032.0 74 2808.0 75 1925.5 76 1272.5 77 843.0 78 578.0 79 407.0 80 280.5 81 200.0 82 142.5 83 89.0 84 57.0 85 42.5 86 33.0 87 27.5 88 24.0 89 16.5 90 9.5 91 4.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.5 100 1.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001355950589160531 3 0.0 4 0.0028719786784302914 5 3.672366178976438E-4 6 4.4256720618434E-4 7 0.0 8 0.0 9 0.0 10-11 3.2015500021845874E-4 12-13 5.320222797747916E-4 14-15 1.4124485303755531E-5 16-17 0.0 18-19 9.887139712628872E-4 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.7109415716520784E-5 28-29 0.0 30-31 5.190902273667105E-5 32-33 9.834209413248514E-4 34-35 7.629703658992622E-4 36-37 3.6608504469375417E-4 38-39 0.0016622712012660773 40-41 9.603355489234782E-6 42-43 2.413795633771975E-5 44-45 3.4005731909011354E-5 46-47 3.42532902609626E-5 48-49 9.85577356636193E-6 50-51 2.4801677109247467E-5 52-53 1.4970086025599347E-5 54-55 0.0031072182034194862 56-57 0.0028596616979792043 58-59 0.0013987340693726322 60-61 1.4850935780508085E-4 62-63 2.0621461776032676E-5 64-65 9.859498513732492E-5 66-67 4.702862193283247E-5 68-69 1.3687054552177473E-4 70-71 0.0 72-73 0.0 74-75 1.2925564796017894E-4 76-77 1.6280075472259213E-5 78-79 3.77327165291938E-4 80-81 0.0 82-83 1.3905878009072084E-4 84-85 2.2440195056907494E-5 86-87 0.0014883684290231617 88-89 0.0 90-91 6.929248218143821E-5 92-93 2.336523388715947E-5 94-95 2.1888720937324725E-4 96-97 1.8033480238070795E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 185.0 20-21 681.0 22-23 1366.0 24-25 3058.0 26-27 4899.0 28-29 9633.0 30-31 19433.0 32-33 22930.0 34-35 30567.0 36-37 45706.0 38-39 54900.0 40-41 54860.0 42-43 61602.0 44-45 73359.0 46-47 73161.0 48-49 67808.0 50-51 61352.0 52-53 58068.0 54-55 63649.0 56-57 65818.0 58-59 66303.0 60-61 65970.0 62-63 63091.0 64-65 65591.0 66-67 69758.0 68-69 73164.0 70-71 72142.0 72-73 69373.0 74-75 71088.0 76-77 68517.0 78-79 74845.0 80-81 78632.0 82-83 76918.0 84-85 76363.0 86-87 82302.0 88-89 90092.0 90-91 97602.0 92-93 104592.0 94-95 122562.0 96-97 210656.0 98-99 967899.0 100-101 7179361.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.89675833133917 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3737419505922 75.87540971546896 2 7.416129258221877 12.592106667784728 3 1.8411366319260873 4.689195950868143 4 0.6624754038441072 2.24968057042438 5 0.2921244836844542 1.240021084701317 6 0.14879788983656245 0.7579475096200723 7 0.07931273082074741 0.4713375618761284 8 0.04924085948723707 0.3344311478332316 9 0.0340087856002342 0.25985120870208694 >10 0.1005918952376755 1.3366333168894102 >50 0.0019987153412968574 0.11026212355672185 >100 3.8767346294560644E-4 0.052490224995943344 >500 5.372194455043621E-5 0.030632917278882364 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.8832647071674043E-5 0.0 0.0 0.0 5 0.0 1.8832647071674043E-5 0.0 0.0 0.0 6 0.0 1.8832647071674043E-5 0.0 0.0 1.8832647071674043E-5 7 0.0 1.8832647071674043E-5 0.0 9.416323535837021E-6 1.8832647071674043E-5 8 0.0 1.8832647071674043E-5 0.0 9.416323535837021E-6 1.8832647071674043E-5 9 0.0 7.533058828669617E-5 0.0 1.8832647071674043E-5 1.8832647071674043E-5 10-11 0.0 8.945507359045169E-5 0.0 2.8248970607511062E-5 2.3540808839592554E-5 12-13 0.0 9.41632353583702E-5 0.0 5.178977944710361E-5 2.8248970607511062E-5 14-15 0.0 1.2241220596588128E-4 0.0 5.6497941215022125E-5 3.295713237542958E-5 16-17 0.0 1.2241220596588128E-4 0.0 7.062242651877766E-5 3.7665294143348085E-5 18-19 0.0 1.2712036773379978E-4 0.0 1.0828772066212575E-4 4.70816176791851E-5 20-21 0.0 1.4595301480547384E-4 0.0 1.1299588243004425E-4 4.70816176791851E-5 22-23 0.0 2.1186727955633297E-4 0.0 1.459530148054738E-4 6.120610298294064E-5 24-25 0.0 2.3069992662800703E-4 0.0 1.789101471809034E-4 7.533058828669617E-5 26-27 0.0 2.4482441193176256E-4 0.0 2.448244119317625E-4 8.474691182253319E-5 28-29 0.0 2.4482441193176256E-4 0.0 5.508549268464657E-4 8.474691182253319E-5 30-31 0.0 2.919060296109476E-4 0.0 0.001577234192252701 8.474691182253319E-5 32-33 0.0 3.013223531467847E-4 0.0 0.0032156744874883426 1.2241220596588128E-4 34-35 9.416323535837021E-6 3.436958090580513E-4 0.0 0.005004775959297376 1.3182852950171828E-4 36-37 9.416323535837021E-6 3.907774267372364E-4 0.0 0.007914419931871017 1.3182852950171828E-4 38-39 9.416323535837021E-6 4.2373455911266593E-4 0.0 0.012344800155482335 1.3182852950171828E-4 40-41 9.416323535837021E-6 4.6610801502393253E-4 0.0 0.016826970158540757 1.3653669126963678E-4 42-43 9.416323535837021E-6 4.896488238635251E-4 0.0 0.02095602802900529 1.412448530375553E-4 44-45 9.416323535837021E-6 5.461467650785471E-4 0.0 0.02553236126742208 1.4595301480547384E-4 46-47 1.4124485303755531E-5 5.838120592218953E-4 0.0 0.030838459579866244 1.5536933834131084E-4 48-49 1.8832647071674043E-5 5.885202209898138E-4 0.0 0.0360927681128633 1.6949382364506637E-4 50-51 1.8832647071674043E-5 6.214773533652434E-4 0.0 0.04118699914575113 1.6949382364506637E-4 52-53 1.8832647071674043E-5 6.591426475085915E-4 0.0 0.046163526134440996 1.8832647071674043E-4 54-55 1.8832647071674043E-5 6.685589710444284E-4 0.0 0.050918769520038695 2.0715911778841447E-4 56-57 1.8832647071674043E-5 6.685589710444284E-4 0.0 0.05570697003801181 2.1186727955633297E-4 58-59 1.8832647071674043E-5 6.82683456348184E-4 0.0 0.05999139724681766 2.1657544132425147E-4 60-61 1.8832647071674043E-5 7.062242651877766E-4 0.0 0.06437940401451772 2.1657544132425147E-4 62-63 1.8832647071674043E-5 7.156405887236136E-4 0.0 0.06838604967901636 2.3540808839592553E-4 64-65 1.8832647071674043E-5 8.380527946894948E-4 0.0 0.07234090556406791 2.3540808839592553E-4 66-67 1.8832647071674043E-5 8.380527946894948E-4 0.0 0.07632401041972697 2.3540808839592553E-4 68-69 1.8832647071674043E-5 8.427609564574134E-4 0.0 0.08068847637858742 2.3540808839592553E-4 70-71 1.8832647071674043E-5 8.568854417611689E-4 0.0 0.08483165873435572 2.3540808839592553E-4 72-73 1.8832647071674043E-5 8.568854417611689E-4 0.0 0.08822624336902496 2.730733825392736E-4 74-75 1.8832647071674043E-5 8.710099270649245E-4 0.0 0.09080631601784431 2.824897060751106E-4 76-77 1.8832647071674043E-5 8.94550735904517E-4 0.0 0.09294852962224723 2.824897060751106E-4 78-79 1.8832647071674043E-5 9.22799706512028E-4 0.0 0.09495891469714843 2.824897060751106E-4 80-81 1.8832647071674043E-5 9.22799706512028E-4 0.0 0.09623482653625434 2.9661419137886615E-4 82-83 1.8832647071674043E-5 9.22799706512028E-4 0.0 0.09655968969824073 3.107386766826217E-4 84-85 1.8832647071674043E-5 9.22799706512028E-4 0.0 0.09686572021315543 3.107386766826217E-4 86-87 1.8832647071674043E-5 9.22799706512028E-4 0.0 0.09705404668387217 3.201550002184587E-4 88-89 1.8832647071674043E-5 0.0010263792654062352 0.0 0.09712937727215887 3.2957132375429574E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9625 0.0 45.767097 1 GTATCAA 16450 0.0 33.28732 1 TCAACGC 18535 0.0 28.504873 4 ATCAACG 18730 0.0 28.114779 3 CAACGCA 19210 0.0 27.525244 5 AACGCAG 19905 0.0 26.630037 6 TATCAAC 21075 0.0 25.44313 2 GTACATG 24750 0.0 24.03126 1 TACATGG 24475 0.0 23.283512 2 ACGCAGA 23295 0.0 22.71751 7 ACATGGG 24920 0.0 22.46397 3 CGCAGAG 23655 0.0 22.316355 8 CATGGGG 17755 0.0 19.567345 4 AGAGTAC 26240 0.0 17.786345 10-11 GCAGAGT 30115 0.0 17.471207 9 GAGTACT 17985 0.0 17.19093 12-13 CAGAGTA 28920 0.0 16.523415 10-11 ATGGGGG 11760 0.0 15.681163 5 GAGTACA 17410 0.0 15.537654 1 GTGGTAT 6150 0.0 14.851311 1 >>END_MODULE