##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138819_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16773346 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.960932839518126 33.0 31.0 34.0 30.0 34.0 2 32.202407319326745 33.0 31.0 34.0 30.0 34.0 3 32.295847590576145 34.0 31.0 34.0 30.0 34.0 4 35.91940397580781 37.0 35.0 37.0 35.0 37.0 5 35.611461839516096 37.0 35.0 37.0 33.0 37.0 6 35.623225741602184 37.0 35.0 37.0 33.0 37.0 7 35.605432988742976 37.0 35.0 37.0 33.0 37.0 8 35.54749565173222 37.0 35.0 37.0 33.0 37.0 9 37.33547552169973 39.0 37.0 39.0 34.0 39.0 10-11 37.14971821960866 39.0 37.0 39.0 33.5 39.0 12-13 37.173535262433624 39.0 37.0 39.0 33.5 39.0 14-15 38.37522391179434 40.0 38.0 41.0 34.0 41.0 16-17 38.30990537010326 40.0 38.0 41.0 34.0 41.0 18-19 38.332415875759075 40.0 38.0 41.0 34.0 41.0 20-21 38.32694616153681 40.0 38.0 41.0 34.0 41.0 22-23 38.28001750583252 40.0 38.0 41.0 34.0 41.0 24-25 38.26673545317318 40.0 38.0 41.0 34.0 41.0 26-27 38.10865096236326 40.0 38.0 41.0 34.0 41.0 28-29 37.99998316199412 40.0 37.5 41.0 33.5 41.0 30-31 37.87598407243955 40.0 37.0 41.0 33.0 41.0 32-33 37.771533224112446 39.0 37.0 40.5 33.0 41.0 34-35 37.68253195590105 39.0 37.0 40.0 33.0 41.0 36-37 37.63982647364203 39.0 37.0 40.0 33.0 41.0 38-39 37.55421914388005 39.0 37.0 40.0 33.0 41.0 40-41 37.51501069743136 39.0 37.0 40.0 33.0 41.0 42-43 37.471652866055166 39.0 37.0 40.0 32.0 41.0 44-45 37.38856877155119 39.0 36.0 40.0 32.0 41.0 46-47 37.29254450845126 39.0 36.0 40.0 32.0 41.0 48-49 37.245733699618896 39.0 36.0 40.0 31.5 41.0 50-51 37.152385221479726 39.0 36.0 40.0 31.0 41.0 52-53 36.95263758983694 39.0 35.5 40.0 31.0 41.0 54-55 36.78614008313357 39.0 35.0 40.0 31.0 41.0 56-57 36.63349123167799 38.0 35.0 40.0 31.0 41.0 58-59 36.45676082368552 38.0 35.0 40.0 30.0 41.0 60-61 36.3236209976032 38.0 35.0 40.0 30.0 41.0 62-63 36.11529642474568 38.0 34.0 40.0 30.0 41.0 64-65 35.89250670043542 37.5 34.0 40.0 29.0 41.0 66-67 35.67177034447759 37.0 34.0 39.5 29.0 41.0 68-69 35.40437661602245 36.5 34.0 39.0 29.0 40.5 70-71 35.113247246932445 36.0 34.0 39.0 29.0 40.0 72-73 34.81554281093619 36.0 33.5 39.0 29.0 40.0 74-75 34.42265746373388 35.0 33.0 38.0 28.5 40.0 76-77 32.41317666953183 33.5 30.5 35.5 26.0 38.5 78-79 33.65557091212594 35.0 32.0 37.0 28.0 39.0 80-81 33.71478846479779 35.0 33.0 36.0 29.0 39.0 82-83 33.46876649162495 35.0 32.5 36.0 28.5 37.5 84-85 33.180997595061015 35.0 32.0 35.5 28.0 37.0 86-87 33.006362211700086 34.0 32.0 35.0 28.0 37.0 88-89 32.83380654783113 34.0 32.0 35.0 27.0 36.0 90-91 32.66247041724496 34.0 32.0 35.0 27.0 36.0 92-93 32.59507513718931 34.0 32.0 35.0 27.0 36.0 94-95 32.55275530458181 34.0 32.0 35.0 27.0 35.0 96-97 32.64029161957287 34.0 32.0 35.0 28.5 35.0 98-99 32.77275187320562 34.0 32.0 35.0 29.0 35.0 100-101 31.55132148035414 33.0 29.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 44.0 20 188.0 21 766.0 22 3103.0 23 9428.0 24 23934.0 25 49966.0 26 90273.0 27 143605.0 28 212686.0 29 292859.0 30 390376.0 31 508968.0 32 664945.0 33 898969.0 34 1268003.0 35 1886270.0 36 2894649.0 37 3869303.0 38 2933740.0 39 627749.0 40 3518.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93097787406281 20.433883615111736 13.399371836722382 24.23576667410307 2 15.035940032497045 21.457874094285305 40.932759593299274 22.57342627991838 3 18.569914434484332 25.960419584738787 30.43328385403842 25.03638212673846 4 12.681247661063274 17.67248572164273 38.73823541283004 30.908031204463953 5 12.892656013267754 38.08351737085026 36.090844610729874 12.932982005152116 6 30.57101681131232 38.2834696284074 18.256622180658784 12.888891379621493 7 26.532118278607026 32.42864601970293 23.47903036162254 17.560205340067508 8 24.25421856795895 37.625587643634134 21.188151725958555 16.932042062448364 9 25.606751330354722 16.135856256706322 21.178135835271032 37.07925657766793 10-11 24.246626626658255 26.771122914852835 29.246723059642417 19.735527398846493 12-13 24.712360026908293 24.276705521049756 29.400951281498894 21.609983170543057 14-15 21.762027140024035 25.746941777357414 26.6979565883264 25.79307449429215 16-17 21.660499342230228 28.8723967179834 27.435700664613965 22.031403275172405 18-19 21.750519586041037 28.25287421902613 28.81194435757476 21.18466183735807 20-21 22.404912295240916 27.55198319641117 28.676659249314696 21.366445259033217 22-23 22.07649709858906 27.483109637068132 28.590534050659222 21.849859213683587 24-25 21.911843725089863 27.53032575105439 28.690395075917667 21.86743544793808 26-27 21.93684680797443 27.70701497687934 28.560051663503728 21.796086551642503 28-29 21.877549860514467 27.822561543437107 28.56076906307996 21.739119532968463 30-31 22.11456545504714 27.66885472409028 28.50034025369289 21.71623956716969 32-33 21.877192305378824 27.82989750710842 28.47937454847735 21.813535639035415 34-35 22.00361812297657 27.83038419059593 28.44928644041735 21.716711246010156 36-37 22.036154416579784 27.752455207530275 28.43818165922584 21.7732087166641 38-39 21.87128819308419 27.895687556784154 28.505709448686627 21.727314801445026 40-41 22.07321231157077 27.816585115040365 28.348049294417883 21.762153278970985 42-43 21.974978501578995 27.86345038721595 28.265649249870666 21.89592186133439 44-45 22.065353415715354 27.95398013199803 28.09606787605948 21.884598576227138 46-47 22.09295338474044 27.934978305845213 27.915369624418833 22.05669868499551 48-49 22.075399710089602 28.01141785226204 27.93749846274043 21.975683974907934 50-51 22.04368510319356 28.1297652488591 27.860372984303655 21.966176663643683 52-53 22.192802005031517 28.035532148160353 27.770885915935068 22.000779930873062 54-55 22.157572116548643 27.950996643851507 27.810336569031573 22.081094670568284 56-57 22.13919364705643 28.06287684281582 27.80383071370457 21.994098796423177 58-59 22.124581755357227 28.11933797976673 27.771325232233725 21.984755032642322 60-61 22.175018666688786 28.072270006079997 27.795099727712252 21.957611599518962 62-63 22.141757658371038 28.12189586002452 27.753824169963774 21.982522311640665 64-65 22.09800888860513 28.09597489157238 27.780135863855275 22.025880355967214 66-67 22.185053382431136 28.117166469348494 27.618678800915543 22.07910134730483 68-69 22.111728791118104 28.128918800225488 27.70306278388901 22.0562896247674 70-71 22.102385976564417 27.952546002969953 27.74839049266352 22.19667752780211 72-73 22.162419451187308 27.989160682803384 27.72768592586749 22.120733940141815 74-75 21.992291641943527 28.118700297101224 27.717548402179972 22.17145965877528 76-77 22.096729650877435 28.07513783945629 27.65513211777299 22.173000391893286 78-79 22.082866987073977 28.099053195558742 27.64261375584652 22.17546606152076 80-81 22.07277878942936 28.1218619471894 27.648980820010998 22.15637844337024 82-83 22.088602004351614 28.07192773973576 27.71958264778159 22.119887608131044 84-85 22.198636620377517 28.0385036269664 27.674671182834583 22.088188569821504 86-87 22.03661479227737 28.092966850832518 27.75109832578807 22.119320031102045 88-89 22.097516974900582 28.064501155452966 27.740713041798987 22.097268827847472 90-91 22.05897447203743 28.134289595940842 27.746489998011125 22.060245934010606 92-93 22.058694505834673 28.148699976963666 27.745717881713233 22.046887635488428 94-95 21.92638558550042 28.211241429640673 27.7813040040086 22.08106898085031 96-97 21.91377378498151 28.22232626747958 27.846286935411698 22.01761301212721 98-99 22.10798056032275 28.840333472079298 27.91095734510857 21.14072862248938 100-101 22.898459301068165 31.483440905971655 25.091907677307805 20.526192115652375 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4317.0 1 3392.0 2 3888.5 3 5719.0 4 7701.5 5 12501.0 6 16860.5 7 20233.5 8 22477.5 9 21865.0 10 19087.5 11 16130.5 12 16659.5 13 21620.5 14 34054.5 15 50952.5 16 63892.5 17 70879.5 18 73346.0 19 72503.0 20 70282.5 21 69125.5 22 72088.5 23 82382.0 24 100848.0 25 126650.5 26 157117.0 27 188493.0 28 220029.0 29 252002.5 30 282230.5 31 314797.0 32 350177.0 33 384784.0 34 420027.0 35 453537.5 36 490794.0 37 524114.0 38 547722.5 39 570483.0 40 595839.5 41 620663.5 42 637802.0 43 652435.0 44 666988.0 45 677320.0 46 680724.5 47 682430.5 48 680636.0 49 669169.5 50 655422.5 51 635552.0 52 605871.5 53 574738.0 54 542310.0 55 503636.5 56 462436.5 57 418388.0 58 370954.5 59 324066.0 60 275219.5 61 226485.0 62 181360.5 63 141367.0 64 106624.5 65 79269.5 66 59801.5 67 46368.5 68 35788.5 69 26366.0 70 19460.0 71 14397.0 72 10453.5 73 7382.0 74 5219.0 75 3706.5 76 2607.5 77 1777.0 78 1214.5 79 858.0 80 632.0 81 462.5 82 332.5 83 229.0 84 156.0 85 115.5 86 94.5 87 77.0 88 57.5 89 38.5 90 22.5 91 14.5 92 11.0 93 7.0 94 4.5 95 3.5 96 3.0 97 3.0 98 1.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.631154809541281E-4 3 0.0 4 0.0013891086489243112 5 2.6828278627293565E-4 6 3.3982486261238513E-4 7 0.0 8 0.0 9 0.0 10-11 2.3549266795068794E-4 12-13 4.620425763589447E-4 14-15 2.9809198474770627E-6 16-17 0.0 18-19 8.197529580561922E-4 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.878102411078915E-5 28-29 0.0 30-31 3.885025944502106E-5 32-33 7.934190649080268E-4 34-35 7.112078220376777E-4 36-37 3.4018871803554444E-4 38-39 0.001545215733888571 40-41 3.038813457604192E-6 42-43 1.2218481601960235E-5 44-45 6.1473915818357366E-6 46-47 1.2383125354099339E-5 48-49 0.0 50-51 6.275224441246172E-6 52-53 1.2625346411887597E-5 54-55 0.002759272027198738 56-57 0.0025598114649321648 58-59 0.0011293346542580567 60-61 1.2635597374271028E-4 62-63 6.524300343817579E-6 64-65 7.225328164552514E-5 66-67 3.308208701257142E-5 68-69 1.4003137636373056E-4 70-71 0.0 72-73 0.0 74-75 9.564727689128312E-5 76-77 6.88861414034091E-6 78-79 2.986273904514934E-4 80-81 0.0 82-83 9.197477952495663E-5 84-85 1.7858556872163773E-5 86-87 0.0012663774900282694 88-89 0.0 90-91 5.9137731221598875E-5 92-93 1.8747011960631123E-5 94-95 1.3341658528254964E-4 96-97 1.9477642354491687E-5 98-99 1.2248293486096227E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 451.0 20-21 1477.0 22-23 3000.0 24-25 5787.0 26-27 9019.0 28-29 15646.0 30-31 29838.0 32-33 35573.0 34-35 48271.0 36-37 69038.0 38-39 81128.0 40-41 83017.0 42-43 96102.0 44-45 114967.0 46-47 113968.0 48-49 105726.0 50-51 96600.0 52-53 92330.0 54-55 99758.0 56-57 104874.0 58-59 107111.0 60-61 106790.0 62-63 102532.0 64-65 107814.0 66-67 115958.0 68-69 120787.0 70-71 120510.0 72-73 118127.0 74-75 122861.0 76-77 114051.0 78-79 126587.0 80-81 135502.0 82-83 135228.0 84-85 137996.0 86-87 151874.0 88-89 169769.0 90-91 187838.0 92-93 209412.0 94-95 256932.0 96-97 423690.0 98-99 1609050.0 100-101 1.0886357E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.89237199759076 #Duplication Level Percentage of deduplicated Percentage of total 1 87.85169350547018 71.94383565168292 2 8.04898287146149 13.183005990239213 3 2.1949531582608093 5.392497616607426 4 0.8583886953879464 2.811819454449453 5 0.4170996294574622 1.7078639007793883 6 0.20750481008141192 1.0195836659085844 7 0.1234730864521607 0.707805274920172 8 0.07978281582237438 0.5226883225872921 9 0.05425755524641705 0.39989519081274766 >10 0.15941942002705012 1.9641644118929311 >50 0.003585351402616829 0.19339349620239382 >100 8.050532378653239E-4 0.10056661303577245 >500 2.7024438664446497E-5 0.019729737811837657 >1k 2.7023253598518746E-5 0.03315067306995645 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1923679389908251E-5 0.0 0.0 0.0 3 0.0 1.1923679389908251E-5 0.0 0.0 0.0 4 0.0 2.3847358779816502E-5 0.0 0.0 0.0 5 0.0 2.3847358779816502E-5 0.0 0.0 0.0 6 4.173287786467888E-5 2.3847358779816502E-5 0.0 0.0 0.0 7 4.173287786467888E-5 2.3847358779816502E-5 0.0 1.7885519084862376E-5 0.0 8 4.173287786467888E-5 2.9809198474770627E-5 0.0 1.7885519084862376E-5 0.0 9 4.173287786467888E-5 8.942759542431188E-5 0.0 3.577103816972475E-5 0.0 10-11 4.471379771215594E-5 8.942759542431188E-5 0.0 3.577103816972475E-5 0.0 12-13 5.365655725458713E-5 9.538943511926601E-5 0.0 4.173287786467888E-5 0.0 14-15 6.856115649197244E-5 1.43084152678899E-4 0.0 4.7694717559633004E-5 0.0 16-17 8.644667557683482E-5 1.5500783206880725E-4 0.0 4.7694717559633004E-5 5.9618396949541255E-6 18-19 8.942759542431188E-5 1.758742710011467E-4 0.0 5.365655725458713E-5 5.9618396949541255E-6 20-21 8.942759542431188E-5 1.9674070993348615E-4 0.0 5.9618396949541255E-5 5.9618396949541255E-6 22-23 8.942759542431188E-5 2.2953082825573383E-4 0.0 6.259931679701832E-5 5.9618396949541255E-6 24-25 8.942759542431188E-5 2.503972671880733E-4 0.0 1.0433219466169719E-4 5.9618396949541255E-6 26-27 8.942759542431188E-5 2.563591068830274E-4 0.0 1.6693151145871549E-4 5.9618396949541255E-6 28-29 8.942759542431188E-5 2.563591068830274E-4 0.0 5.007945343761466E-4 5.9618396949541255E-6 30-31 8.942759542431188E-5 2.7424462596788976E-4 0.0 0.0015262309619082561 5.9618396949541255E-6 32-33 8.942759542431188E-5 2.7424462596788976E-4 0.0 0.0032193934352752274 5.9618396949541255E-6 34-35 8.942759542431188E-5 3.487676221548163E-4 0.0 0.005258342610949538 1.1923679389908251E-5 36-37 8.942759542431188E-5 4.2329061834174293E-4 0.0 0.008397251210342885 1.4904599237385314E-5 38-39 9.240851527178894E-5 4.2329061834174293E-4 0.0 0.01344692943196903 1.7885519084862376E-5 40-41 9.538943511926601E-5 4.5906165651146767E-4 0.0 0.018830470676512605 1.7885519084862376E-5 42-43 1.0135127481422013E-4 4.709853359013759E-4 0.0 0.02345089644010205 1.7885519084862376E-5 44-45 1.0135127481422013E-4 5.455083320883025E-4 0.0 0.028437975344931178 1.7885519084862376E-5 46-47 1.0135127481422013E-4 6.081076488853208E-4 0.0 0.03394373430322131 1.7885519084862376E-5 48-49 1.0135127481422013E-4 6.081076488853208E-4 0.0 0.03950016889891855 1.7885519084862376E-5 50-51 1.1327495420412838E-4 6.617642061399079E-4 0.0 0.04516391660912498 1.7885519084862376E-5 52-53 1.1923679389908251E-4 6.67726045834862E-4 0.0 0.05039245002159974 1.7885519084862376E-5 54-55 1.1923679389908251E-4 6.826306450722474E-4 0.0 0.055767048506600886 2.3847358779816502E-5 56-57 1.1923679389908251E-4 7.034970840045868E-4 0.0 0.061535128411469006 2.9809198474770627E-5 58-59 1.1923679389908251E-4 7.034970840045868E-4 0.0 0.06680837562165592 3.279011832224769E-5 60-61 1.281795534415137E-4 7.064780038520638E-4 0.0 0.07203988995397817 3.577103816972475E-5 62-63 1.43084152678899E-4 7.15420763394495E-4 0.0 0.0770388925381972 3.577103816972475E-5 64-65 1.43084152678899E-4 7.988865191238528E-4 0.0 0.08179345969492313 3.577103816972475E-5 66-67 1.460650725263761E-4 8.10810198513761E-4 0.0 0.08684015699670179 3.577103816972475E-5 68-69 1.4904599237385314E-4 8.316766374461005E-4 0.0 0.09189877797787036 3.577103816972475E-5 70-71 1.5500783206880728E-4 8.406193969885317E-4 0.0 0.09647150902390017 3.577103816972475E-5 72-73 1.7885519084862375E-4 8.495621565309629E-4 0.0 0.09982802477215935 5.365655725458713E-5 74-75 1.7885519084862375E-4 8.853331947006876E-4 0.0 0.10271653610436463 5.365655725458713E-5 76-77 1.7885519084862375E-4 9.360088321077977E-4 0.0 0.10491943587165017 5.365655725458713E-5 78-79 1.8481703054357788E-4 9.598561908876142E-4 0.0 0.10719983955497013 5.365655725458713E-5 80-81 1.8481703054357788E-4 9.628371107350913E-4 0.0 0.10831768449777403 5.365655725458713E-5 82-83 1.8481703054357788E-4 9.717798702775224E-4 0.0 0.1088154981123027 5.365655725458713E-5 84-85 1.8481703054357788E-4 9.896653893623848E-4 0.0 0.10928350252835659 5.365655725458713E-5 86-87 1.8481703054357788E-4 0.0010135127481422012 0.0 0.10950110967722242 5.365655725458713E-5 88-89 1.8481703054357788E-4 0.001049283786311926 0.0 0.109554766234477 7.15420763394495E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15880 0.0 47.27141 1 GTATCAA 27285 0.0 34.44615 1 TCAACGC 31035 0.0 29.20241 4 ATCAACG 31185 0.0 29.075836 3 CAACGCA 32000 0.0 28.32169 5 AACGCAG 33200 0.0 27.363585 6 TATCAAC 34165 0.0 26.897078 2 ACGCAGA 39035 0.0 23.262213 7 GTACATG 40690 0.0 23.248127 1 TACATGG 40095 0.0 23.12561 2 CGCAGAG 39530 0.0 22.937836 8 ACATGGG 40600 0.0 21.978926 3 CATGGGG 29865 0.0 19.6471 4 GCAGAGT 49280 0.0 18.311148 9 AGAGTAC 42620 0.0 18.032425 10-11 GAGTACT 29500 0.0 17.821375 12-13 CAGAGTA 47640 0.0 17.189163 10-11 ATGGGGG 19220 0.0 15.649856 5 GAGTACA 28590 0.0 15.567811 1 AGTACTT 33405 0.0 15.196514 12-13 >>END_MODULE