##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138817_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14907046 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.39811502560601 33.0 31.0 34.0 31.0 34.0 2 32.59212905091995 34.0 31.0 34.0 31.0 34.0 3 32.669497430946414 34.0 31.0 34.0 31.0 34.0 4 36.14203531672204 37.0 35.0 37.0 35.0 37.0 5 35.9567718513782 37.0 35.0 37.0 35.0 37.0 6 36.02574769005207 37.0 35.0 37.0 35.0 37.0 7 36.02474514400774 37.0 35.0 37.0 35.0 37.0 8 36.006648936348626 37.0 35.0 37.0 35.0 37.0 9 37.85679852332917 39.0 38.0 39.0 35.0 39.0 10-11 37.723947823063 39.0 37.0 39.0 35.0 39.0 12-13 37.728419668122044 39.0 37.0 39.0 35.0 39.0 14-15 39.026707538166846 40.0 38.0 41.0 36.0 41.0 16-17 38.9946551114151 40.0 38.0 41.0 36.0 41.0 18-19 39.06840986470425 40.0 38.5 41.0 36.0 41.0 20-21 39.08988860932511 40.0 39.0 41.0 36.0 41.0 22-23 39.04987254569092 40.0 39.0 41.0 36.0 41.0 24-25 39.01730085527793 40.0 38.5 41.0 36.0 41.0 26-27 38.92207692681419 40.0 38.0 41.0 35.0 41.0 28-29 38.856654871547306 40.0 38.0 41.0 35.0 41.0 30-31 38.72296650119162 40.0 38.0 41.0 35.0 41.0 32-33 38.589324717237986 40.0 38.0 41.0 35.0 41.0 34-35 38.54996738575906 40.0 38.0 41.0 35.0 41.0 36-37 38.50294852215228 40.0 38.0 41.0 34.0 41.0 38-39 38.439018758020765 40.0 38.0 41.0 34.0 41.0 40-41 38.353221494648025 40.0 38.0 41.0 34.0 41.0 42-43 38.37487449852559 40.0 38.0 41.0 34.0 41.0 44-45 38.31781410069043 40.0 38.0 41.0 34.0 41.0 46-47 38.27040650553222 40.0 38.0 41.0 34.0 41.0 48-49 38.23443690367021 40.0 38.0 41.0 34.0 41.0 50-51 38.17885415912558 40.0 37.5 41.0 33.5 41.0 52-53 37.93320291397248 40.0 37.0 41.0 33.0 41.0 54-55 37.78907457388994 40.0 37.0 41.0 33.0 41.0 56-57 37.698198618098274 39.0 37.0 41.0 33.0 41.0 58-59 37.568775506703744 39.0 36.0 41.0 33.0 41.0 60-61 37.395232092344514 39.0 36.0 40.5 32.0 41.0 62-63 37.15414908543712 39.0 35.0 40.0 32.0 41.0 64-65 36.9218727833083 38.5 35.0 40.0 32.0 41.0 66-67 36.668066597955125 38.0 35.0 40.0 31.0 41.0 68-69 36.43349508034639 37.5 35.0 40.0 31.0 41.0 70-71 36.13265843101611 37.0 35.0 39.5 31.0 41.0 72-73 35.85048918157811 36.5 34.5 39.0 31.0 41.0 74-75 35.40251712479473 36.0 34.0 39.0 30.5 40.0 76-77 33.45780074553471 34.5 32.0 36.5 27.5 39.0 78-79 34.674211950599044 35.0 34.0 37.0 30.0 39.0 80-81 34.6544905226186 35.0 34.0 37.0 30.0 39.0 82-83 34.37991597031911 35.0 34.0 36.5 30.0 39.0 84-85 34.09204242963365 35.0 34.0 36.0 30.0 37.0 86-87 33.851349334480346 35.0 34.0 36.0 30.0 37.0 88-89 33.70373787396428 35.0 34.0 35.0 30.0 37.0 90-91 33.527966340518304 35.0 33.0 35.0 30.0 36.0 92-93 33.4849407377333 35.0 33.0 35.0 30.0 36.0 94-95 33.351319487186004 35.0 33.0 35.0 29.5 36.0 96-97 33.37455803646013 35.0 33.0 35.0 30.0 35.5 98-99 33.474895630647914 35.0 33.0 35.0 30.0 35.0 100-101 32.19727216712774 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 0.0 18 4.0 19 20.0 20 78.0 21 297.0 22 1301.0 23 4305.0 24 11271.0 25 24384.0 26 44600.0 27 73222.0 28 109827.0 29 153777.0 30 206328.0 31 272749.0 32 362199.0 33 499696.0 34 734601.0 35 1143765.0 36 2036017.0 37 3614681.0 38 4044375.0 39 1544471.0 40 25076.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.08860695807875 20.41446038336502 13.507766729907456 23.989165928648777 2 14.639024908909724 21.564837526745137 41.5769057514583 22.21923181288684 3 18.255020563512765 26.60819335249826 30.491503073474867 24.645283010514103 4 12.199868290038564 17.97235888623309 39.301745348174414 30.52602747555393 5 12.721214308920095 38.48545188324853 35.92991095916739 12.86342284866399 6 29.595945955827034 38.47126492529579 19.012951708362873 12.919837410514301 7 26.28770985210618 32.75485968179074 23.729315653819004 17.22811481228407 8 24.15938073847763 37.41586361241523 21.4932589595551 16.93149668955204 9 25.86242103230915 16.18015400234225 21.404596188943135 36.55282877640546 10-11 24.016521987860237 26.910274766747854 29.40517583499452 19.668027410397393 12-13 24.770087444302284 24.592277377264615 29.49810381656704 21.13953136186606 14-15 21.77191148740711 25.940010093284734 27.113396370187555 25.174682049120605 16-17 21.33348180916685 29.017632790977277 27.819446230980656 21.82943916887522 18-19 21.379691858467464 28.367997925276413 29.362520917960538 20.889789298295586 20-21 22.220537276013545 27.52899999828934 29.190549269767008 21.05991345593011 22-23 21.896532487670946 27.536790922976813 28.999732912702708 21.566943676649533 24-25 21.63107415554028 27.60300245484954 29.151621768904867 21.614301620705316 26-27 21.615011488332556 27.741977860680727 29.102027140168264 21.540983510818453 28-29 21.51738987072413 27.953543623580835 29.017742628751137 21.511323876943894 30-31 21.77570600550346 27.7883139140003 28.9524479218123 21.483532158683932 32-33 21.583298993703252 27.8629217728949 28.931454815601075 21.622324417800773 34-35 21.691635693285555 27.953995397834504 28.914834223683755 21.439534685196186 36-37 21.66906831522957 27.921942212858603 28.87626740818508 21.532722063726748 38-39 21.561943884361472 28.014335767442144 28.890279688749708 21.533440659446672 40-41 21.80036181256973 27.91905665440062 28.757875406043183 21.522706126986467 42-43 21.6973838056408 27.977282961401563 28.59344065199015 21.73189258096749 44-45 21.754203356322403 28.10714083127338 28.43348625548792 21.705169556916292 46-47 21.796595412695254 28.129829021550645 28.21761629893752 21.855959266816573 48-49 21.791776714614155 28.207327561870272 28.149429138061173 21.8514665854544 50-51 21.754450213855133 28.317714343136135 28.09011426782771 21.837721175181024 52-53 21.91274959483589 28.219252990787396 27.949393578137467 21.91860383623925 54-55 21.87457314750054 28.15102698691852 28.021719136416255 21.95268072916468 56-57 21.90318650222381 28.22960758574322 27.961265914222423 21.905939997810545 58-59 21.867400112341205 28.29247581842872 27.95531002265832 21.88481404657176 60-61 21.96846687165358 28.227055936985284 27.942297729979494 21.862179461381643 62-63 21.887044979726852 28.255493560011253 27.93680213996294 21.920659320298956 64-65 21.89190089615588 28.245804956347666 27.92546124537455 21.936832902121907 66-67 21.954052605023637 28.24501137894745 27.769171912889828 22.03176410313909 68-69 21.91277870611925 28.234221110580776 27.876803854042254 21.976196329257725 70-71 21.90218005824927 28.071309917358167 27.937715780482282 22.088794243910282 72-73 21.913557990405163 28.108656487594825 27.937162406595935 22.04062311540408 74-75 21.89927257761238 28.17940388678769 27.8766713742851 22.044652161314826 76-77 21.90847526212119 28.130259308279413 27.848047359188556 22.11321807041084 78-79 21.93977100407855 28.08496058870172 27.84502089586744 22.13024751135229 80-81 21.92433954336992 28.105301755239743 27.86217659158324 22.1081821098071 82-83 21.985969501893997 28.058216595478786 27.93108324512385 22.02473065750337 84-85 22.07473442225754 28.055068768413133 27.827591633309485 22.04260517601984 86-87 21.954193485870192 28.022516570127515 27.928985273945646 22.09430467005665 88-89 21.98532961186675 28.01189457400336 27.89028600189943 22.112489812230464 90-91 22.04176626273574 27.95785146825031 27.91468655065177 22.08569571836218 92-93 22.01843270534915 27.91377915712696 27.975391854745606 22.092396282778285 94-95 21.928736899775487 27.925379178649614 28.01427617581873 22.131607745756167 96-97 21.948863745619178 27.93888414495039 28.05390190326496 22.058350206165475 98-99 22.167236482426155 28.532985181621996 28.06758820337569 21.23219013257616 100-101 22.92442231406861 31.062075888057212 25.23407425307871 20.779427544795467 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2491.0 1 2354.5 2 3647.5 3 5530.0 4 7965.5 5 13702.5 6 18573.0 7 21765.5 8 23720.0 9 23001.0 10 20454.5 11 17708.0 12 18689.5 13 24780.5 14 39104.5 15 58432.5 16 73168.0 17 80681.0 18 82504.0 19 80060.5 20 75906.5 21 72853.5 22 73992.0 23 83840.0 24 102447.5 25 127563.5 26 157677.5 27 187777.0 28 217835.0 29 249896.0 30 279791.0 31 309297.0 32 341030.5 33 372903.5 34 404603.5 35 436491.0 36 469317.5 37 497485.0 38 519108.0 39 539306.0 40 559388.0 41 575646.5 42 585397.5 43 594073.5 44 603983.0 45 613998.0 46 621970.0 47 626605.0 48 625012.5 49 613349.5 50 598227.0 51 576516.5 52 546130.5 53 516542.0 54 484939.5 55 447199.5 56 407199.0 57 365284.5 58 321588.5 59 277754.5 60 235227.5 61 193449.5 62 154105.5 63 120206.5 64 90849.5 65 68061.5 66 51189.0 67 38918.5 68 29369.5 69 20999.0 70 14838.0 71 10662.5 72 7700.0 73 5523.0 74 3944.0 75 2772.0 76 1967.0 77 1371.0 78 944.0 79 662.5 80 454.5 81 323.0 82 252.5 83 186.0 84 124.5 85 83.5 86 60.0 87 41.0 88 26.5 89 20.5 90 15.5 91 12.0 92 11.0 93 8.5 94 6.0 95 3.5 96 2.0 97 2.0 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 8.787790686364019E-4 3 0.002032595861044502 4 3.287036210930053E-4 5 4.360354157356193E-4 6 3.6895304408398553E-4 7 0.0 8 0.0 9 0.0 10-11 1.3416474330326747E-5 12-13 8.620084757234934E-4 14-15 7.043649023421542E-4 16-17 1.241023875555224E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.356363468789562E-5 28-29 1.914512644012496E-4 30-31 3.700232710999043E-5 32-33 0.0010286606093508892 34-35 0.0017458541799656938 36-37 0.0012405465256608238 38-39 6.876030741809801E-4 40-41 3.446226664393076E-5 42-43 4.1668860069161976E-5 44-45 6.34159443380388E-4 46-47 1.4160378249191717E-5 48-49 0.0 50-51 0.0 52-53 9.502129896955409E-4 54-55 0.003348614569469506 56-57 0.0061032711272771415 58-59 0.004377613051482899 60-61 2.1539337064551125E-4 62-63 2.2892848724284558E-5 64-65 1.0013980672478087E-4 66-67 1.7506940140114656E-4 68-69 0.0 70-71 1.0340708445912824E-4 72-73 8.04362314225988E-6 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 2.0824100946025616E-4 90-91 5.8464638540348446E-5 92-93 5.530896341174941E-4 94-95 3.070055884320294E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 333.0 20-21 1066.0 22-23 2129.0 24-25 4831.0 26-27 8915.0 28-29 16997.0 30-31 37430.0 32-33 44399.0 34-35 59099.0 36-37 88940.0 38-39 107896.0 40-41 107373.0 42-43 121794.0 44-45 145168.0 46-47 143711.0 48-49 133571.0 50-51 121206.0 52-53 114474.0 54-55 123119.0 56-57 128609.0 58-59 131422.0 60-61 129172.0 62-63 122596.0 64-65 127056.0 66-67 136516.0 68-69 141916.0 70-71 141204.0 72-73 134741.0 74-75 135205.0 76-77 134872.0 78-79 146812.0 80-81 149853.0 82-83 144652.0 84-85 143756.0 86-87 151416.0 88-89 163452.0 90-91 178124.0 92-93 183016.0 94-95 210046.0 96-97 307779.0 98-99 1256569.0 100-101 9025811.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.82617101913145 #Duplication Level Percentage of deduplicated Percentage of total 1 88.54887588806774 73.34164337856944 2 7.607307366903691 12.601682819325276 3 2.0780310648293403 5.163460690758685 4 0.7966355796902507 2.639290990533985 5 0.37353099980311155 1.5469071235319838 6 0.20869565325054196 1.0371277120247249 7 0.11582480917502794 0.671532781709239 8 0.07333755213757351 0.48594149083769067 9 0.05089658379433111 0.3794012238274941 >10 0.14262473822366506 1.7897235733219263 >50 0.003278981372159407 0.17990947653141115 >100 8.740152792713221E-4 0.10937509924381265 >500 7.231997724402952E-5 0.03929704751997499 >1k 1.44474960449844E-5 0.01470659226432507 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.708237165163373E-6 6.708237165163373E-6 2 0.0 1.3416474330326746E-5 0.0 6.708237165163373E-6 6.708237165163373E-6 3 0.0 1.3416474330326746E-5 0.0 6.708237165163373E-6 6.708237165163373E-6 4 0.0 6.708237165163374E-5 0.0 1.3416474330326746E-5 1.3416474330326746E-5 5 0.0 6.708237165163374E-5 0.0 1.3416474330326746E-5 1.3416474330326746E-5 6 0.0 6.708237165163374E-5 0.0 2.012471149549012E-5 3.354118582581687E-5 7 0.0 6.708237165163374E-5 0.0 2.012471149549012E-5 3.354118582581687E-5 8 0.0 7.37906088167971E-5 0.0 2.012471149549012E-5 4.024942299098024E-5 9 0.0 1.2074826897294071E-4 0.0 4.024942299098024E-5 4.024942299098024E-5 10-11 0.0 1.2074826897294071E-4 0.0 6.0374134486470356E-5 4.024942299098024E-5 12-13 0.0 1.2074826897294071E-4 0.0 6.708237165163374E-5 5.03117787387253E-5 14-15 0.0 1.5428945479875757E-4 0.0 7.043649023421542E-5 8.049884598196048E-5 16-17 0.0 1.5428945479875757E-4 0.0 7.37906088167971E-5 8.720708314712385E-5 18-19 0.0 1.8447652204199274E-4 0.0 8.049884598196048E-5 1.0397767606003228E-4 20-21 0.0 2.1466358928522793E-4 0.0 9.391532031228722E-5 1.1404003180777734E-4 22-23 0.0 2.549130122762082E-4 0.0 1.006235574774506E-4 1.3751886188584914E-4 24-25 0.0 2.851000795194434E-4 0.0 1.241023875555224E-4 1.6099769196392097E-4 26-27 0.0 2.951624352671884E-4 0.0 1.9453887778973783E-4 1.8112240345941107E-4 28-29 0.0 2.951624352671884E-4 0.0 7.613849182460429E-4 1.9453887778973783E-4 30-31 0.0 3.287036210930053E-4 0.0 0.002022533505296757 2.0460123353748287E-4 32-33 0.0 3.3205773967558697E-4 0.0 0.004165815279566455 2.1466358928522793E-4 34-35 0.0 4.159107042401291E-4 0.0 0.006627738319181413 2.3478830078071806E-4 36-37 0.0 4.762848387265995E-4 0.0 0.010364226420177411 2.4149653794588142E-4 38-39 0.0 4.964095502220896E-4 0.0 0.016200392753869548 2.549130122762082E-4 40-41 0.0 5.433672103782332E-4 0.0 0.02240551213164567 2.6162124944137155E-4 42-43 0.0 5.534295661259783E-4 0.0 0.027953224267235774 2.6162124944137155E-4 44-45 0.0 6.003872262821219E-4 0.0 0.03413486481493382 2.683294866065349E-4 46-47 0.0 6.305742935253571E-4 0.0 0.04070222899962876 2.851000795194434E-4 48-49 0.0 6.305742935253571E-4 0.0 0.04736686262321858 3.287036210930053E-4 50-51 0.0 6.641154793511739E-4 0.0 0.05385372796193155 3.287036210930053E-4 52-53 0.0 6.708237165163373E-4 0.0 0.060166179134350295 3.387659768407503E-4 54-55 0.0 6.808860722640824E-4 0.0 0.0665557750341684 3.521824511710771E-4 56-57 0.0 6.909484280118274E-4 0.0 0.0733512192824789 3.6559892550140383E-4 58-59 0.0 6.909484280118274E-4 0.0 0.07991522934859127 3.7901539983173057E-4 60-61 3.3541185825816864E-6 6.976566651769908E-4 0.0 0.08616730638652353 3.95785992744639E-4 62-63 6.708237165163373E-6 7.144272580898992E-4 0.0 0.09182905855392141 3.95785992744639E-4 64-65 6.708237165163373E-6 7.982802226544414E-4 0.0 0.09755453897438834 3.991401113272207E-4 66-67 6.708237165163373E-6 8.049884598196048E-4 0.0 0.10365568067610445 4.125565856575474E-4 68-69 6.708237165163373E-6 8.284672898976767E-4 0.0 0.10991111183261928 4.192648228227108E-4 70-71 6.708237165163373E-6 8.45237882810585E-4 0.0 0.1155124898655307 4.2932717857045586E-4 72-73 6.708237165163373E-6 8.5530023855833E-4 0.0 0.12033235826870059 4.3603541573561925E-4 74-75 6.708237165163373E-6 8.787790686364019E-4 0.0 0.12427344760323407 4.3938953431820095E-4 76-77 6.708237165163373E-6 8.955496615493103E-4 0.0 0.12810385102454236 4.4274365290078265E-4 78-79 6.708237165163373E-6 9.056120172970554E-4 0.0 0.13126678484791687 4.4274365290078265E-4 80-81 6.708237165163373E-6 9.089661358796371E-4 0.0 0.13264532758535796 4.595142458136911E-4 82-83 6.708237165163373E-6 9.156743730448005E-4 0.0 0.13326919364171813 4.997636688046712E-4 84-85 6.708237165163373E-6 9.257367287925454E-4 0.0 0.13392660088390418 5.098260245524163E-4 86-87 6.708237165163373E-6 9.425073217054539E-4 0.0 0.13413120211744164 5.098260245524163E-4 88-89 6.708237165163373E-6 0.0010095896933570876 0.0 0.1342117009634236 5.232424988827431E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20395 0.0 41.81159 1 GTATCAA 33355 0.0 32.023865 1 TCAACGC 39785 0.0 26.294369 4 ATCAACG 39860 0.0 26.19216 3 CAACGCA 40680 0.0 25.684486 5 TATCAAC 41945 0.0 25.082235 2 AACGCAG 42195 0.0 24.85297 6 GTACATG 50315 0.0 23.971361 1 TACATGG 49685 0.0 23.730185 2 ACATGGG 50710 0.0 22.757837 3 ACGCAGA 48120 0.0 21.748934 7 CGCAGAG 48380 0.0 21.553326 8 CATGGGG 33405 0.0 20.01609 4 GCAGAGT 56975 0.0 18.294703 9 AGAGTAC 49435 0.0 17.814968 10-11 GAGTACT 30555 0.0 17.534634 12-13 GAGTACA 35005 0.0 17.300348 1 CAGAGTA 55805 0.0 16.771091 10-11 AGTACAT 35995 0.0 16.307207 2 ATGGGGG 21470 0.0 15.82757 5 >>END_MODULE