##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138816_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18015164 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13635568346755 33.0 31.0 34.0 30.0 34.0 2 32.346249914794 34.0 31.0 34.0 30.0 34.0 3 32.420581516771094 34.0 31.0 34.0 30.0 34.0 4 35.97702740868748 37.0 35.0 37.0 35.0 37.0 5 35.736383859730616 37.0 35.0 37.0 35.0 37.0 6 35.79155499222766 37.0 35.0 37.0 35.0 37.0 7 35.791579416096354 37.0 35.0 37.0 35.0 37.0 8 35.76348763741479 37.0 35.0 37.0 35.0 37.0 9 37.580407982963685 39.0 37.0 39.0 35.0 39.0 10-11 37.422677584283996 39.0 37.0 39.0 34.5 39.0 12-13 37.42989414362256 39.0 37.0 39.0 35.0 39.0 14-15 38.63878383233147 40.0 38.0 41.0 34.5 41.0 16-17 38.5913644749501 40.0 38.0 41.0 34.5 41.0 18-19 38.67068795488068 40.0 38.0 41.0 35.0 41.0 20-21 38.69996424147058 40.0 38.0 41.0 35.0 41.0 22-23 38.65462661076069 40.0 38.0 41.0 35.0 41.0 24-25 38.614968308403334 40.0 38.0 41.0 34.0 41.0 26-27 38.50273405230427 40.0 38.0 41.0 34.0 41.0 28-29 38.4287068505097 40.0 38.0 41.0 34.0 41.0 30-31 38.27918093881473 40.0 38.0 41.0 34.0 41.0 32-33 38.13336599017667 40.0 38.0 41.0 34.0 41.0 34-35 38.083368114507905 40.0 38.0 41.0 34.0 41.0 36-37 38.0280999095981 40.0 37.0 41.0 33.5 41.0 38-39 37.9565955377421 40.0 37.0 41.0 33.0 41.0 40-41 37.871110069183835 40.0 37.0 41.0 33.0 41.0 42-43 37.890622326333514 40.0 37.0 41.0 33.0 41.0 44-45 37.82758650740216 40.0 37.0 41.0 33.0 41.0 46-47 37.77581403851027 40.0 37.0 41.0 33.0 41.0 48-49 37.73789793533139 40.0 37.0 41.0 33.0 41.0 50-51 37.684181355167915 39.5 37.0 41.0 33.0 41.0 52-53 37.430499104025216 39.0 36.0 40.5 32.0 41.0 54-55 37.2818585779651 39.0 36.0 40.0 32.0 41.0 56-57 37.1902952392292 39.0 36.0 40.0 31.5 41.0 58-59 37.06414454828641 39.0 35.5 40.0 31.0 41.0 60-61 36.898935795280096 39.0 35.0 40.0 31.0 41.0 62-63 36.66560450760349 38.0 35.0 40.0 31.0 41.0 64-65 36.44853932144419 38.0 35.0 40.0 31.0 41.0 66-67 36.206323981529096 38.0 34.5 40.0 30.5 41.0 68-69 35.992689725988896 37.0 34.0 40.0 30.0 41.0 70-71 35.70528354180184 37.0 34.0 39.0 30.0 41.0 72-73 35.43983526999662 36.0 34.0 39.0 30.0 40.5 74-75 35.01041840547445 36.0 34.0 39.0 29.0 40.0 76-77 33.046889856704844 34.5 31.0 36.5 27.0 39.0 78-79 34.30460152688794 35.0 33.0 37.0 29.0 39.0 80-81 34.31801516629184 35.0 34.0 37.0 29.0 39.0 82-83 34.04916235374188 35.0 33.0 36.5 29.0 39.0 84-85 33.75413011553823 35.0 33.0 36.0 29.0 37.5 86-87 33.50403753866511 35.0 33.0 36.0 29.0 37.0 88-89 33.349846362695274 35.0 33.0 35.0 29.0 37.0 90-91 33.16633227782094 35.0 33.0 35.0 29.0 36.0 92-93 33.122588642500574 34.5 33.0 35.0 29.0 36.0 94-95 32.987220854226834 34.0 32.5 35.0 29.0 36.0 96-97 33.030558765699865 34.0 33.0 35.0 29.0 35.5 98-99 33.16465088585474 34.0 33.0 35.0 29.0 35.0 100-101 31.909322847682773 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 31.0 20 139.0 21 620.0 22 2334.0 23 7398.0 24 18675.0 25 39051.0 26 71603.0 27 115348.0 28 170892.0 29 239298.0 30 320493.0 31 422148.0 32 557180.0 33 763347.0 34 1104461.0 35 1683303.0 36 2773439.0 37 4263337.0 38 4098983.0 39 1348615.0 40 14462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.57628540045486 21.012731274608434 13.843576444821707 23.567406880114998 2 14.526783912222813 21.98996417887515 41.81775500375575 21.66549690514629 3 18.198486197956637 27.202502594379485 30.621871167236243 23.977140040427635 4 12.08126028061239 18.413315408369392 39.710717104579885 29.794707206438332 5 12.450688610914794 38.71809705498296 36.126200298105346 12.705014035996898 6 28.883028492561348 39.047908064617836 19.248343388608482 12.820720054212337 7 25.638034713422535 33.02612732251563 24.211425441367062 17.124412522694772 8 23.655815733900617 37.85989958237405 21.868116215872362 16.616168467852972 9 25.636130761840413 16.322465895952988 21.874505277887007 36.16689806431959 10-11 23.721008693593042 27.314453737819257 29.56042003171384 19.404117536873866 12-13 24.407930858058887 25.061419653700785 29.77327670126432 20.75737278697601 14-15 21.468451777967736 26.312479813751267 27.486195776825134 24.732872631455862 16-17 20.88494244482796 29.377206372259256 28.2236105846252 21.514240598287586 18-19 20.903881307991423 28.607646869048764 29.953185549684697 20.535286273275112 20-21 21.823223365656663 27.812665587183826 29.78111426465267 20.58299678250684 22-23 21.497652494454858 27.80791661238827 29.620961843142645 21.07346905001423 24-25 21.138639594868092 27.90189905512699 29.795751298964746 21.163710051040173 26-27 21.143970976122493 28.10166278164638 29.667695021986844 21.08667122024428 28-29 21.07416162002068 28.24580889568788 29.644750753039823 21.035278731251616 30-31 21.312523880066298 28.084511231028657 29.56843935836882 21.03452553053623 32-33 21.108473991987093 28.19603971824769 29.538819645053355 21.156666644711862 34-35 21.232335794108714 28.25189138632303 29.52738391307327 20.988388906494986 36-37 21.214695881366747 28.211352865669642 29.459047178791025 21.114904074172586 38-39 21.101497033111382 28.311010893690263 29.51154765140191 21.07594442179644 40-41 21.312457581034753 28.205063991937134 29.361886130989625 21.12059229603849 42-43 21.206764303414012 28.322039487565178 29.217539660209585 21.253656548811225 44-45 21.344773852686192 28.490440149203277 28.94152151089729 21.223264487213246 46-47 21.36629318964317 28.466181240074224 28.73568240254173 21.431843167740883 48-49 21.364632865124655 28.527544496781914 28.67640708298277 21.431415555110668 50-51 21.331608783606608 28.63074884649369 28.568476320881857 21.46916604901784 52-53 21.478294007201086 28.588763768442927 28.411933374021615 21.521008850334375 54-55 21.485603550251533 28.55336824005551 28.4490141001874 21.512014109505554 56-57 21.50491528132992 28.607755016722408 28.38794142238835 21.499388279559316 58-59 21.437047438146838 28.64116992864194 28.468380146709876 21.453402486501343 60-61 21.54239031837612 28.59029906877499 28.40359866840788 21.46371194444101 62-63 21.481567011876844 28.617494608813278 28.380499386636192 21.52043899267369 64-65 21.45608700242644 28.627809921660063 28.40852103992717 21.507582035986328 66-67 21.534857253279657 28.61445411323635 28.268410172923414 21.58227846056058 68-69 21.518196239937026 28.613471673108986 28.340317076684467 21.52801501026952 70-71 21.485634908815385 28.434918534427972 28.403496937757964 21.675949618998676 72-73 21.521062993126694 28.50038515019252 28.39862269006874 21.57992916661204 74-75 21.48316315417055 28.524819279064513 28.365410763837684 21.626606802927252 76-77 21.46946306661768 28.52548550270186 28.345738048234608 21.659313382445852 78-79 21.52646182202952 28.47242702901338 28.309378900271298 21.6917322486858 80-81 21.44617334094425 28.501236306312244 28.36183803615933 21.690752316584174 82-83 21.525150162526845 28.45385891828407 28.45141447813477 21.569576441054316 84-85 21.720402384850438 28.37306668520789 28.348447021405754 21.558083908535917 86-87 21.535329968669913 28.439672252888908 28.404933162347145 21.620064616094034 88-89 21.564720318162188 28.404586018358497 28.40055073645744 21.630142927021872 90-91 21.6368772199645 28.324090829534278 28.442406253320236 21.59662569718099 92-93 21.601713851645197 28.310623753567654 28.474630727086492 21.613031667700657 94-95 21.45977215811445 28.346912877317624 28.55448847828307 21.638826486284852 96-97 21.456634927163826 28.40527216892595 28.555301440449334 21.582791463460893 98-99 21.68630717330507 28.997784151890905 28.58385660022515 20.732052074578874 100-101 22.371832220460163 31.568291379698326 25.865698530733503 20.194177869108007 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4311.0 1 3846.0 2 5676.0 3 8497.5 4 11505.0 5 19052.5 6 25865.5 7 31478.5 8 35400.5 9 34264.0 10 29202.0 11 24130.0 12 25376.5 13 34029.0 14 54460.5 15 81773.5 16 102350.0 17 112389.0 18 114879.0 19 112456.0 20 108006.5 21 104937.0 22 108089.5 23 122567.5 24 147625.5 25 180338.5 26 220031.0 27 261305.0 28 300473.5 29 339407.5 30 376250.5 31 412299.0 32 451856.0 33 490527.0 34 528998.0 35 565997.5 36 601490.0 37 632553.0 38 654352.5 39 671244.5 40 688626.5 41 705060.0 42 714475.0 43 722511.5 44 729297.0 45 734661.0 46 732593.0 47 723501.5 48 711577.0 49 694407.5 50 676960.5 51 651811.0 52 615043.5 53 579192.5 54 543948.5 55 500944.0 56 455013.0 57 406656.0 58 355455.5 59 307445.0 60 260361.5 61 212702.0 62 168306.5 63 130095.0 64 97408.0 65 71677.5 66 53279.5 67 40228.0 68 30353.5 69 21741.5 70 15379.0 71 11086.5 72 8021.5 73 5702.5 74 3988.0 75 2786.0 76 1979.5 77 1359.0 78 922.5 79 652.0 80 480.5 81 349.0 82 266.0 83 195.5 84 134.5 85 98.5 86 84.5 87 74.0 88 54.5 89 41.5 90 28.0 91 16.5 92 13.0 93 8.5 94 3.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.328844078244307E-4 3 0.0014376777252763282 4 3.6080715113112486E-4 5 3.1084923789758453E-4 6 4.218668228610076E-4 7 0.0 8 0.0 9 0.0 10-11 2.775439624085576E-6 12-13 9.1589507594824E-4 14-15 6.41126553163768E-4 16-17 8.326318872256728E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.1660412975785524E-5 28-29 1.4452518183143923E-4 30-31 4.453806097427565E-5 32-33 9.684206942292593E-4 34-35 0.001691052776945239 36-37 0.0012009410652937876 38-39 6.737736004066195E-4 40-41 3.137522816208534E-5 42-43 5.46160838560404E-5 44-45 5.802290210364352E-4 46-47 2.932228086645815E-5 48-49 0.0 50-51 0.0 52-53 8.422149020297289E-4 54-55 0.0032734257844186333 56-57 0.005950855767485803 58-59 0.004296585872018491 60-61 2.0699840272505243E-4 62-63 4.434907422416284E-5 64-65 1.0554871514589518E-4 66-67 1.5510830793057792E-4 68-69 3.267477541319868E-6 70-71 1.1570274708073705E-4 72-73 1.3377913893592341E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.2817435947475474E-5 88-89 2.0342809630508003E-4 90-91 1.014743242148255E-4 92-93 4.398591150378843E-4 94-95 2.4563715275191983E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 418.0 20-21 1353.0 22-23 2757.0 24-25 5949.0 26-27 10391.0 28-29 21419.0 30-31 44730.0 32-33 53512.0 34-35 72062.0 36-37 107947.0 38-39 132606.0 40-41 132476.0 42-43 151584.0 44-45 180226.0 46-47 179617.0 48-49 167813.0 50-51 151765.0 52-53 141381.0 54-55 151265.0 56-57 159620.0 58-59 162855.0 60-61 161404.0 62-63 151321.0 64-65 156035.0 66-67 169160.0 68-69 175796.0 70-71 177216.0 72-73 168710.0 74-75 169201.0 76-77 165399.0 78-79 181951.0 80-81 188966.0 82-83 180481.0 84-85 179429.0 86-87 189502.0 88-89 208959.0 90-91 229599.0 92-93 239251.0 94-95 277068.0 96-97 403270.0 98-99 1512978.0 100-101 1.0697722E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.60139973451494 #Duplication Level Percentage of deduplicated Percentage of total 1 87.90019962787149 71.72779326577603 2 7.862457182787061 12.831750229362305 3 2.2012524929411015 5.388758537792531 4 0.9008153352790569 2.940311690443497 5 0.44857268728480165 1.8302079582556336 6 0.2320103977116757 1.1359423923740544 7 0.13367036726976278 0.7635382350567536 8 0.08315667728545784 0.5428561011011763 9 0.05892587683430118 0.43275906272363435 >10 0.1752954653723765 2.1004244729262203 >50 0.0027807689713137966 0.15144291340777344 >100 8.13317722985901E-4 0.10228370195452803 >500 2.493134825924854E-5 0.014141505492329697 >1k 2.4871320324541926E-5 0.03778993333357049 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1101758496342304E-5 0.0 5.550879248171152E-6 0.0 3 0.0 1.1101758496342304E-5 0.0 1.1101758496342304E-5 0.0 4 0.0 2.775439624085576E-5 0.0 1.6652637744513455E-5 0.0 5 0.0 3.330527548902691E-5 0.0 2.220351699268461E-5 0.0 6 0.0 3.330527548902691E-5 0.0 2.220351699268461E-5 0.0 7 0.0 3.330527548902691E-5 0.0 2.220351699268461E-5 0.0 8 0.0 3.330527548902691E-5 0.0 2.220351699268461E-5 0.0 9 0.0 8.881406797073843E-5 0.0 3.885615473719806E-5 5.550879248171152E-6 10-11 0.0 9.436494721890958E-5 0.0 3.885615473719806E-5 5.550879248171152E-6 12-13 0.0 9.436494721890958E-5 0.0 5.828423210579709E-5 5.550879248171152E-6 14-15 0.0 1.3044566233202205E-4 0.0 7.216143022622497E-5 1.387719812042788E-5 16-17 0.0 1.387719812042788E-4 0.0 1.0824214533933745E-4 3.0529835864941334E-5 18-19 5.550879248171152E-6 1.5542461894879227E-4 0.0 1.6097549819696342E-4 3.330527548902691E-5 20-21 5.550879248171152E-6 1.6652637744513457E-4 0.0 1.8872989443781917E-4 3.330527548902691E-5 22-23 5.550879248171152E-6 1.8317901518964802E-4 0.0 2.6921764353630083E-4 3.6080715113112484E-5 24-25 5.550879248171152E-6 2.1370885105458933E-4 0.0 3.524808322588681E-4 3.885615473719806E-5 26-27 5.550879248171152E-6 2.2203516992684607E-4 0.0 5.911686399302277E-4 3.885615473719806E-5 28-29 5.550879248171152E-6 2.2758604917501722E-4 0.0 0.002511772859797446 4.163159436128364E-5 30-31 5.550879248171152E-6 2.9142116052898544E-4 0.0 0.006847009552619116 4.440703398536922E-5 32-33 5.550879248171152E-6 2.9419660015307105E-4 0.0 0.014579384345321529 4.440703398536922E-5 34-35 5.550879248171152E-6 3.441545133866114E-4 0.0 0.02274750315900538 4.440703398536922E-5 36-37 5.550879248171152E-6 3.913369869960662E-4 0.0 0.03412958105738033 4.440703398536922E-5 38-39 5.550879248171152E-6 3.9966330586832294E-4 0.0 0.051795254264685016 4.995791323354037E-5 40-41 5.550879248171152E-6 4.2186682286100754E-4 0.0 0.06848952360355975 4.995791323354037E-5 42-43 5.550879248171152E-6 4.38519460605521E-4 0.0 0.0796412400131356 4.995791323354037E-5 44-45 5.550879248171152E-6 4.7182473609454786E-4 0.0 0.09143130753625112 5.550879248171152E-5 46-47 5.550879248171152E-6 4.884773738390613E-4 0.0 0.10373760682944658 6.105967172988267E-5 48-49 5.550879248171152E-6 4.995791323354037E-4 0.0 0.11449798625202634 6.105967172988267E-5 50-51 5.550879248171152E-6 5.412107266966873E-4 0.0 0.12472270582715761 6.105967172988267E-5 52-53 5.550879248171152E-6 5.49537045568944E-4 0.0 0.13373733372618757 7.493686985031054E-5 54-55 5.550879248171152E-6 5.523124851930295E-4 0.0 0.14248829486092937 8.881406797073843E-5 56-57 5.550879248171152E-6 5.661896833134575E-4 0.0 0.15082016461243428 8.881406797073843E-5 58-59 5.550879248171152E-6 6.328002342915113E-4 0.0 0.1588800412807788 8.881406797073843E-5 60-61 5.550879248171152E-6 6.439019927878537E-4 0.0 0.16686220563964893 9.158950759482401E-5 62-63 5.550879248171152E-6 6.494528720360248E-4 0.0 0.17463343658708852 9.436494721890958E-5 64-65 5.550879248171152E-6 6.661055097805383E-4 0.0 0.18161921812091192 9.436494721890958E-5 66-67 5.550879248171152E-6 6.716563890287094E-4 0.0 0.18888531905676795 9.991582646708073E-5 68-69 5.550879248171152E-6 6.93859906021394E-4 0.0 0.19617917438886484 1.0546670571525188E-4 70-71 5.550879248171152E-6 6.93859906021394E-4 0.0 0.20311777344907878 1.0546670571525188E-4 72-73 5.550879248171152E-6 6.966353456454796E-4 0.0 0.2080802594969438 1.387719812042788E-4 74-75 5.550879248171152E-6 7.049616645177362E-4 0.0 0.21203803640088983 1.4432286045244994E-4 76-77 5.550879248171152E-6 7.243897418863353E-4 0.0 0.21552953944798947 1.498737397006211E-4 78-79 5.550879248171152E-6 7.327160607585921E-4 0.0 0.21858529847410768 1.498737397006211E-4 80-81 5.550879248171152E-6 7.382669400067632E-4 0.0 0.22011179026735478 1.5820005857287783E-4 82-83 5.550879248171152E-6 7.438178192549344E-4 0.0 0.22077512033751123 1.6652637744513457E-4 84-85 5.550879248171152E-6 7.715722154957901E-4 0.0 0.22135796265856922 1.6652637744513457E-4 86-87 5.550879248171152E-6 8.104283702329881E-4 5.550879248171152E-6 0.22156334519075152 1.7207725669330572E-4 88-89 5.550879248171152E-6 8.38182766473844E-4 5.550879248171152E-6 0.22162995574172958 1.7207725669330572E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23040 0.0 48.910084 1 GTATCAA 41165 0.0 36.28815 1 ATCAACG 49975 0.0 28.928932 3 TCAACGC 50275 0.0 28.772686 4 CAACGCA 50735 0.0 28.445154 5 AACGCAG 52540 0.0 27.524117 6 TATCAAC 53595 0.0 27.34481 2 ACGCAGA 60770 0.0 23.76193 7 TACATGG 64020 0.0 23.623217 2 CGCAGAG 61555 0.0 23.438343 8 GTACATG 65685 0.0 23.435328 1 ACATGGG 64950 0.0 22.681086 3 CATGGGG 41005 0.0 20.148188 4 GCAGAGT 73135 0.0 19.583342 9 AGAGTAC 67035 0.0 18.24175 10-11 GAGTACT 42525 0.0 18.134035 12-13 CAGAGTA 71540 0.0 17.756239 10-11 GTGGTAT 12185 0.0 17.09802 1 ATGGGGG 25695 0.0 16.642757 5 TGGTATC 11515 0.0 16.554607 2 >>END_MODULE