##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138815_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11686154 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44649300360067 33.0 31.0 34.0 31.0 34.0 2 32.6302229116611 34.0 31.0 34.0 31.0 34.0 3 32.713604578546544 34.0 31.0 34.0 31.0 34.0 4 36.175604737024685 37.0 35.0 37.0 35.0 37.0 5 35.98735640485313 37.0 35.0 37.0 35.0 37.0 6 36.056276513213845 37.0 35.0 37.0 35.0 37.0 7 36.05504847873817 37.0 35.0 37.0 35.0 37.0 8 36.041310682710495 37.0 35.0 37.0 35.0 37.0 9 37.909631860062774 39.0 38.0 39.0 35.0 39.0 10-11 37.779592798451915 39.0 37.5 39.0 35.0 39.0 12-13 37.78048509372715 39.0 38.0 39.0 35.0 39.0 14-15 39.11469586144423 40.0 38.5 41.0 36.0 41.0 16-17 39.08733617578547 40.0 38.0 41.0 36.0 41.0 18-19 39.14766761588115 40.0 38.5 41.0 36.0 41.0 20-21 39.160275063537725 40.0 39.0 41.0 36.0 41.0 22-23 39.12075936788499 40.0 39.0 41.0 36.0 41.0 24-25 39.08949932495082 40.0 39.0 41.0 36.0 41.0 26-27 39.000580524681624 40.0 39.0 41.0 35.5 41.0 28-29 38.93775752153805 40.0 38.0 41.0 35.0 41.0 30-31 38.810886015523835 40.0 38.0 41.0 35.0 41.0 32-33 38.683914242886416 40.0 38.0 41.0 35.0 41.0 34-35 38.64381487527268 40.0 38.0 41.0 35.0 41.0 36-37 38.593786863651104 40.0 38.0 41.0 35.0 41.0 38-39 38.52583977665129 40.0 38.0 41.0 34.5 41.0 40-41 38.440532593949236 40.0 38.0 41.0 34.0 41.0 42-43 38.45405938879796 40.0 38.0 41.0 34.0 41.0 44-45 38.39493214696607 40.0 38.0 41.0 34.0 41.0 46-47 38.34081984469959 40.0 38.0 41.0 34.0 41.0 48-49 38.29328153337494 40.0 38.0 41.0 34.0 41.0 50-51 38.22716585276943 40.0 38.0 41.0 34.0 41.0 52-53 37.96738226598702 40.0 37.0 41.0 33.0 41.0 54-55 37.81532253075842 40.0 37.0 41.0 33.0 41.0 56-57 37.719246921302 39.0 36.5 41.0 33.0 41.0 58-59 37.58526941220623 39.0 36.0 41.0 33.0 41.0 60-61 37.39420812517392 39.0 36.0 40.5 32.5 41.0 62-63 37.1343431364926 39.0 35.0 40.0 32.0 41.0 64-65 36.89302475224049 38.5 35.0 40.0 32.0 41.0 66-67 36.62297665085068 38.0 35.0 40.0 31.0 41.0 68-69 36.383212226422316 37.0 35.0 40.0 31.0 41.0 70-71 36.07327733999081 37.0 35.0 39.0 31.0 41.0 72-73 35.781710405872666 36.0 34.5 39.0 31.0 41.0 74-75 35.33929792916069 36.0 34.0 39.0 30.5 40.0 76-77 33.42649620982445 34.5 32.0 36.5 27.5 39.0 78-79 34.611154339022214 35.0 34.0 37.0 30.0 39.0 80-81 34.589770375453796 35.0 34.0 37.0 30.0 39.0 82-83 34.32787196647748 35.0 34.0 36.0 30.0 38.5 84-85 34.051374058085216 35.0 34.0 36.0 30.0 37.0 86-87 33.82718288856408 35.0 34.0 35.5 30.0 37.0 88-89 33.69586378657543 35.0 34.0 35.0 30.0 36.5 90-91 33.53699376755468 35.0 33.5 35.0 30.0 36.0 92-93 33.50687505738004 35.0 33.0 35.0 30.0 36.0 94-95 33.38097333561488 35.0 33.0 35.0 30.0 36.0 96-97 33.4069910457829 35.0 33.0 35.0 30.0 35.5 98-99 33.50992552061368 35.0 33.0 35.0 30.0 35.0 100-101 32.28988898344795 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 11.0 20 54.0 21 208.0 22 951.0 23 3261.0 24 8758.0 25 19002.0 26 35241.0 27 57788.0 28 85457.0 29 119062.0 30 157841.0 31 207133.0 32 274015.0 33 372838.0 34 548309.0 35 859872.0 36 1534919.0 37 2816190.0 38 3251498.0 39 1313175.0 40 20567.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.58895612705429 19.76118062452369 12.769701648634785 24.880161599787236 2 15.171276626969435 21.162118518022837 40.30178922075978 23.364815634247947 3 18.63001097052335 25.472340075955042 30.19621148978338 25.701437463738223 4 12.603878744501696 17.125686317446682 38.429720913759 31.84071402429262 5 13.163901418008217 37.811898056752845 35.91856486033419 13.105635664904746 6 31.089509556358998 37.62166705330858 18.171607910359775 13.117215479972646 7 26.833242142795655 32.197111213834766 23.282407539726073 17.68723910364351 8 24.601079191665622 37.05317420941056 21.253741821304082 17.09200477761974 9 25.802749133718418 15.802273357000088 21.012918364758843 37.38205914452266 10-11 24.499956294429985 26.471148098473975 29.070532061725874 19.958363545370165 12-13 24.880350777658975 24.017966744066744 29.251525431850922 21.85015704642336 14-15 21.935223593956234 25.439997508142287 26.472685127721185 26.15209377018029 16-17 21.91511242507042 28.51922264487869 27.29270548638862 22.272959443662273 18-19 22.02133824353162 27.932932425843436 28.60390595571477 21.44182337491017 20-21 22.595302525576564 27.2897818475027 28.44786779793077 21.667047828989972 22-23 22.324362611747834 27.224995997983527 28.321768885720083 22.128872504548564 24-25 22.10954586555342 27.304484627039482 28.44546274071255 22.140506766694546 26-27 22.125158805163522 27.462078350188495 28.32710785410501 22.085654990542974 28-29 22.046298894799193 27.57574770829897 28.34766588187912 22.03028751502272 30-31 22.297349900983622 27.445579189797026 28.25359419877592 22.00347671044343 32-33 22.083375705991607 27.555768479209398 28.249433461599654 22.11142235319934 34-35 22.191024190354362 27.584687658205603 28.26126138886015 21.963026762579887 36-37 22.220523506852697 27.541234194009196 28.193203853033626 22.045038446104478 38-39 22.06856425255468 27.640287200014896 28.268704413658654 22.02244413377177 40-41 22.256611388088736 27.52938358007364 28.156570916718376 22.05743411511925 42-43 22.141188192856372 27.647489988915407 28.03448983690448 22.176831981323737 44-45 22.19865226896836 27.684470696150964 27.929160157451726 22.187716877428947 46-47 22.255910130936893 27.67172719752412 27.763196256577743 22.309166414961236 48-49 22.19094298157405 27.79251973686616 27.750902282857904 22.265634998701884 50-51 22.15298788612727 27.886043262538756 27.697155766593728 22.263813084740242 52-53 22.344208829496758 27.796352566599587 27.56577058718439 22.293668016719266 54-55 22.290098689963347 27.691184353310007 27.615748135949413 22.402968820777236 56-57 22.212377064280435 27.77656728594586 27.664654615858254 22.346401033915452 58-59 22.246387008990204 27.815928518112393 27.606001155957937 22.331683316939465 60-61 22.298181232131153 27.7371205374169 27.658695807478946 22.306002422973002 62-63 22.249388597748062 27.82969754357776 27.625062061280314 22.29585179739387 64-65 22.2261375207344 27.824681036267286 27.59919142314412 22.3499900198542 66-67 22.264022641752597 27.85828136585078 27.478287073570634 22.399408918825987 68-69 22.221650483864693 27.8982052140823 27.493126906190398 22.387017395862607 70-71 22.203909149827396 27.740668381596535 27.543450766144034 22.511971702432035 72-73 22.207540570171304 27.770627171702873 27.49693767397702 22.524894584148804 74-75 22.172509349385543 27.822942075065388 27.482467356267627 22.522081219281446 76-77 22.268362523459416 27.77030820906599 27.451603480524394 22.5097257869502 78-79 22.23753594693348 27.771549321517497 27.387322630174527 22.603592101374495 80-81 22.229497057020243 27.83068088394763 27.39037719032254 22.549444868709585 82-83 22.250777392023526 27.80999644357675 27.452660322989885 22.486565841409835 84-85 22.314802800519328 27.802986215732606 27.39671289615464 22.485498087593427 86-87 22.2348536365772 27.838336504924865 27.463348728572086 22.46346112992585 88-89 22.22762697726355 27.83430870521469 27.448652627608155 22.489411689913602 90-91 22.208839833619045 27.81028570966113 27.54599076066017 22.43488369605965 92-93 22.20823785794719 27.75545296744928 27.56123837215345 22.47507080245008 94-95 22.105142715046878 27.83478342865705 27.64663422477374 22.41343963152233 96-97 22.09449176894915 27.873926056756492 27.63634058772586 22.395241586568496 98-99 22.366075393199623 28.450437086948178 27.743141514484197 21.440346005368003 100-101 26.528699791158637 35.38393696938067 28.32614761591356 9.761215623547132 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3832.0 1 3067.0 2 3372.0 3 4733.5 4 6043.0 5 9279.5 6 12431.5 7 15019.5 8 16793.0 9 16530.0 10 14449.5 11 12197.5 12 12595.5 13 16056.0 14 24230.0 15 34922.0 16 42794.5 17 47042.0 18 48999.0 19 49551.0 20 49472.5 21 50210.0 22 53518.0 23 61249.5 24 73864.0 25 90512.0 26 110788.0 27 130025.5 28 148234.0 29 168590.0 30 188565.5 31 209697.5 32 233977.0 33 258749.5 34 282804.5 35 307588.5 36 334890.5 37 358799.5 38 379622.0 39 399456.5 40 417870.5 41 437213.0 42 452804.0 43 465585.0 44 478407.5 45 490523.0 46 498948.5 47 503508.0 48 504478.5 49 500399.5 50 493385.5 51 481103.5 52 461969.5 53 440416.5 54 417430.5 55 389701.0 56 360297.0 57 329026.0 58 294105.5 59 256811.5 60 218003.0 61 180935.0 62 146864.0 63 116812.0 64 89856.0 65 67712.0 66 51433.5 67 39651.5 68 30569.5 69 22846.5 70 17003.0 71 12655.0 72 9190.5 73 6587.0 74 4693.5 75 3308.0 76 2340.0 77 1576.0 78 1097.0 79 799.0 80 554.5 81 380.5 82 278.0 83 193.0 84 137.5 85 101.0 86 80.5 87 66.5 88 49.0 89 32.5 90 19.5 91 13.5 92 11.5 93 6.5 94 2.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010011848209428014 3 0.002515797755189603 4 4.535281667518672E-4 5 3.765139497562671E-4 6 5.219852485257339E-4 7 0.0 8 0.0 9 0.0 10-11 4.2785676108666714E-6 12-13 0.001018299091386268 14-15 8.000921432320677E-4 16-17 1.2835702832600016E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.4250613278637386E-5 28-29 2.056581880365376E-4 30-31 2.5750860765439187E-5 32-33 0.001295370792358087 34-35 0.0019733478857304624 36-37 0.0013843157288296465 38-39 7.167973146324993E-4 40-41 3.08269320108051E-5 42-43 2.2191371284720618E-5 44-45 6.582686218707556E-4 46-47 9.048726396284086E-6 48-49 9.141669457161269E-6 50-51 0.0 52-53 0.0010106197506861618 54-55 0.003767206374564123 56-57 0.00691315592063678 58-59 0.00481665839870814 60-61 2.273315608565621E-4 62-63 2.443116431502051E-5 64-65 8.38874345110537E-5 66-67 1.945129687033122E-4 68-69 0.0 70-71 1.429333058901386E-4 72-73 2.065736592865989E-5 74-75 0.0 76-77 0.0 78-79 5.344275273785886E-6 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 2.905229367288895E-4 90-91 1.2139517041454021E-4 92-93 7.105003496131473E-4 94-95 4.3594337609121703E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 257.0 20-21 828.0 22-23 1679.0 24-25 3586.0 26-27 6763.0 28-29 15589.0 30-31 30864.0 32-33 36402.0 34-35 50204.0 36-37 77220.0 38-39 87584.0 40-41 86922.0 42-43 95276.0 44-45 112838.0 46-47 113748.0 48-49 108707.0 50-51 99493.0 52-53 89685.0 54-55 97930.0 56-57 101945.0 58-59 103872.0 60-61 107513.0 62-63 99017.0 64-65 105241.0 66-67 113127.0 68-69 116007.0 70-71 114969.0 72-73 107798.0 74-75 109119.0 76-77 107407.0 78-79 115983.0 80-81 118579.0 82-83 112995.0 84-85 111519.0 86-87 117395.0 88-89 125745.0 90-91 133515.0 92-93 137967.0 94-95 160584.0 96-97 240400.0 98-99 981728.0 100-101 7028154.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.4013038963185 #Duplication Level Percentage of deduplicated Percentage of total 1 89.85629753842248 76.73844973076834 2 7.164553555485623 12.237244309469535 3 1.6916185660297152 4.333992937024746 4 0.6074637844128317 2.0751279703459176 5 0.27342083413064866 1.1675247873588208 6 0.13642149868832903 0.6990344320483921 7 0.07699646494399055 0.46029189511367796 8 0.04965849701109352 0.3392720315423057 9 0.031181690235665686 0.23966613034352566 >10 0.10940147529535979 1.455032974100808 >50 0.0023574057445621584 0.1368345857257693 >100 5.960238360775685E-4 0.09070526404401284 >500 1.6332900760149306E-5 0.012595504722573078 >1k 1.6332862846969115E-5 0.014227447391607168 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5671405665200032E-5 0.0 8.557135221733343E-6 0.0 3 0.0 2.5671405665200032E-5 0.0 8.557135221733343E-6 0.0 4 0.0 6.845708177386674E-5 0.0 8.557135221733343E-6 0.0 5 0.0 6.845708177386674E-5 0.0 8.557135221733343E-6 0.0 6 4.278567610866672E-5 6.845708177386674E-5 0.0 8.557135221733343E-6 0.0 7 4.278567610866672E-5 6.845708177386674E-5 0.0 3.422854088693337E-5 8.557135221733343E-6 8 4.278567610866672E-5 7.70142169956001E-5 0.0 3.422854088693337E-5 8.557135221733343E-6 9 4.278567610866672E-5 1.8825697487813355E-4 0.0 8.557135221733344E-5 2.5671405665200032E-5 10-11 4.706424371953339E-5 1.8825697487813355E-4 0.0 1.3263559593686684E-4 2.5671405665200032E-5 12-13 5.1342811330400064E-5 1.8825697487813355E-4 0.0 1.5830700160206684E-4 2.5671405665200032E-5 14-15 5.1342811330400064E-5 2.695497594846003E-4 0.0 1.8825697487813355E-4 3.850710849780005E-5 16-17 7.70142169956001E-5 2.7382832709546697E-4 0.0 2.267640833759336E-4 4.278567610866672E-5 18-19 7.70142169956001E-5 2.823854623172003E-4 0.0 2.4815692143026697E-4 4.278567610866672E-5 20-21 7.70142169956001E-5 2.909425975389337E-4 0.0 3.0377830037153373E-4 4.278567610866672E-5 22-23 7.70142169956001E-5 3.2944970603673374E-4 0.0 3.5512111170193374E-4 4.706424371953339E-5 24-25 8.98499198282001E-5 3.4656397648020045E-4 0.0 3.9790678781060046E-4 5.9899946552133403E-5 26-27 9.840705504993345E-5 3.5939967931280045E-4 0.0 5.562137894126674E-4 6.845708177386674E-5 28-29 1.0268562266080013E-4 3.5939967931280045E-4 0.0 0.001916798289668269 6.845708177386674E-5 30-31 1.1552132549340013E-4 4.7919957241706723E-4 0.0 0.00556641646173754 8.129278460646676E-5 32-33 1.1979989310426681E-4 4.7919957241706723E-4 0.0 0.011436611223846614 1.0268562266080013E-4 34-35 1.2835702832600013E-4 5.776066274670007E-4 0.0 0.01815396237290729 1.0268562266080013E-4 36-37 1.4547129876946684E-4 6.845708177386675E-4 0.0 0.027956160769402834 1.0268562266080013E-4 38-39 1.4547129876946684E-4 7.273564938473342E-4 0.0 0.046961558096872594 1.0268562266080013E-4 40-41 1.540284339912002E-4 7.958135756212009E-4 0.0 0.08876316365503997 1.0268562266080013E-4 42-43 1.540284339912002E-4 8.257635488972677E-4 0.0 0.10450829246302933 1.069641902716668E-4 44-45 1.540284339912002E-4 9.156134687254677E-4 0.0 0.12560163078460201 1.1552132549340013E-4 46-47 1.540284339912002E-4 9.926276857210679E-4 0.0 0.14951454516173585 1.1979989310426681E-4 48-49 1.5830700160206684E-4 0.0010054633885536678 0.0 0.17168180395363608 1.1979989310426681E-4 50-51 1.668641368238002E-4 0.0011081490112144678 0.0 0.19387901271881236 1.2407846071513348E-4 52-53 1.7114270443466687E-4 0.001120984714047068 0.0 0.22211755895053242 1.3691416354773349E-4 54-55 1.7114270443466687E-4 0.0011466561197122681 0.0 0.28072965665179495 1.4547129876946684E-4 56-57 1.7114270443466687E-4 0.0011637703901557347 0.0 0.344715635272306 1.4974986638033352E-4 58-59 1.7114270443466687E-4 0.0011808846605992013 0.0 0.40980120576880985 1.540284339912002E-4 60-61 1.8825697487813355E-4 0.0011894417958209348 0.0 0.4528863816102372 1.6258556921293352E-4 62-63 2.310426509868003E-4 0.0012022774986535348 0.0 0.4724864998356174 1.6258556921293352E-4 64-65 2.310426509868003E-4 0.0012921274184817348 0.0 0.4901869340417728 1.6258556921293352E-4 66-67 2.3959978620853361E-4 0.0013263559593686683 0.0 0.4983247696376413 1.6258556921293352E-4 68-69 2.3959978620853361E-4 0.001394813041142535 0.0 0.5052175420587475 1.668641368238002E-4 70-71 2.4815692143026697E-4 0.001420484446807735 0.0 0.5119434503430299 1.7969983965640022E-4 72-73 2.695497594846003E-4 0.0014290415820294683 0.0 0.5174414097229936 1.968141100998669E-4 74-75 2.7382832709546697E-4 0.0014461558524729349 0.0 0.5217542058747471 1.968141100998669E-4 76-77 2.7382832709546697E-4 0.0014846629609707352 0.0 0.5253182526945992 1.968141100998669E-4 78-79 2.823854623172003E-4 0.001497498663803335 0.0 0.5287624996213467 1.968141100998669E-4 80-81 2.823854623172003E-4 0.001497498663803335 0.0 0.5303156196640915 2.0537124532160026E-4 82-83 2.8666402992806703E-4 0.0015060557990250684 0.0 0.5308547191830606 2.310426509868003E-4 84-85 2.909425975389337E-4 0.0015060557990250684 0.0 0.5312569045384821 2.310426509868003E-4 86-87 2.909425975389337E-4 0.0015060557990250684 0.0 0.5314066544048623 2.310426509868003E-4 88-89 2.9949973276066703E-4 0.0015745128807989352 0.0 0.5314836686218579 2.310426509868003E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10850 0.0 44.648327 1 GTATCAA 18135 0.0 30.75442 1 TCAACGC 20240 0.0 26.369013 4 ATCAACG 20480 0.0 26.101585 3 CAACGCA 20885 0.0 25.594769 5 AACGCAG 21610 0.0 24.833546 6 TATCAAC 22700 0.0 23.883049 2 GTACATG 28125 0.0 23.529936 1 TACATGG 27805 0.0 22.922033 2 ACATGGG 28070 0.0 21.910166 3 ACGCAGA 26135 0.0 20.437172 7 CGCAGAG 26500 0.0 20.123888 8 CATGGGG 21180 0.0 19.530499 4 GAGTACA 19395 0.0 17.027988 1 AGAGTAC 28325 0.0 16.656485 10-11 GAGTACT 19795 0.0 16.332668 12-13 GCAGAGT 33670 0.0 15.939016 9 CAGAGTA 31805 0.0 15.761108 10-11 ATGGGGG 14275 0.0 15.31494 5 AGTACAT 20780 0.0 15.203823 2 >>END_MODULE