##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138813_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9175579 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45673411999395 34.0 31.0 34.0 31.0 34.0 2 32.655239631199294 34.0 31.0 34.0 31.0 34.0 3 32.73889200888576 34.0 31.0 34.0 31.0 34.0 4 36.19676534854095 37.0 37.0 37.0 35.0 37.0 5 36.01047410741055 37.0 35.0 37.0 35.0 37.0 6 36.07295942850037 37.0 35.0 37.0 35.0 37.0 7 36.076402371992 37.0 35.0 37.0 35.0 37.0 8 36.06378137009119 37.0 35.0 37.0 35.0 37.0 9 37.934543858213196 39.0 38.0 39.0 35.0 39.0 10-11 37.81154971255765 39.0 38.0 39.0 35.0 39.0 12-13 37.81416219074568 39.0 38.0 39.0 35.0 39.0 14-15 39.144086057130565 40.0 39.0 41.0 36.0 41.0 16-17 39.118486473714626 40.0 38.5 41.0 36.0 41.0 18-19 39.189251163332585 40.0 39.0 41.0 36.0 41.0 20-21 39.202283996193856 40.0 39.0 41.0 36.0 41.0 22-23 39.163688527434644 40.0 39.0 41.0 36.0 41.0 24-25 39.13178931867617 40.0 39.0 41.0 36.0 41.0 26-27 39.040450939121314 40.0 39.0 41.0 36.0 41.0 28-29 38.98154308197685 40.0 39.0 41.0 35.5 41.0 30-31 38.85355618240927 40.0 38.0 41.0 35.0 41.0 32-33 38.7312003356099 40.0 38.0 41.0 35.0 41.0 34-35 38.69552379794338 40.0 38.0 41.0 35.0 41.0 36-37 38.64664384607313 40.0 38.0 41.0 35.0 41.0 38-39 38.572283565406885 40.0 38.0 41.0 35.0 41.0 40-41 38.496914129659686 40.0 38.0 41.0 34.0 41.0 42-43 38.519094007634095 40.0 38.0 41.0 34.0 41.0 44-45 38.462542575489955 40.0 38.0 41.0 34.0 41.0 46-47 38.41833695018077 40.0 38.0 41.0 34.0 41.0 48-49 38.37641899841336 40.0 38.0 41.0 34.0 41.0 50-51 38.30245434080756 40.0 38.0 41.0 34.0 41.0 52-53 38.06014382620219 40.0 37.0 41.0 33.0 41.0 54-55 37.91290061573848 40.0 37.0 41.0 33.0 41.0 56-57 37.82000106099369 39.5 37.0 41.0 33.0 41.0 58-59 37.69648164065437 39.0 36.0 41.0 33.0 41.0 60-61 37.514353275470555 39.0 36.0 41.0 33.0 41.0 62-63 37.27521307088371 39.0 35.5 40.5 32.0 41.0 64-65 37.05186996036812 39.0 35.0 40.0 32.0 41.0 66-67 36.79885928146116 38.0 35.0 40.0 32.0 41.0 68-69 36.5680432172856 37.5 35.0 40.0 31.5 41.0 70-71 36.260233058561305 37.0 35.0 39.5 31.0 41.0 72-73 35.96825751320756 36.5 35.0 39.0 31.0 41.0 74-75 35.52181256295801 36.0 34.0 39.0 31.0 40.0 76-77 33.59382270414742 34.5 32.0 36.5 28.0 39.0 78-79 34.76841685048083 35.0 34.0 37.0 30.5 39.0 80-81 34.734101517116386 35.0 34.0 37.0 31.0 39.0 82-83 34.461818777969256 35.0 34.0 36.5 31.0 39.0 84-85 34.178446663082866 35.0 34.0 36.0 30.0 37.0 86-87 33.9464124958225 35.0 34.0 36.0 30.0 37.0 88-89 33.80690261895144 35.0 34.0 35.0 30.0 36.5 90-91 33.63745532485814 35.0 34.0 35.0 30.0 36.0 92-93 33.59670883663526 35.0 34.0 35.0 30.0 36.0 94-95 33.46778786757993 35.0 33.0 35.0 30.0 36.0 96-97 33.48784320548243 35.0 33.5 35.0 30.0 35.5 98-99 33.58077051168387 35.0 33.5 35.0 30.0 35.0 100-101 32.307643533040846 34.0 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 13.0 20 27.0 21 142.0 22 733.0 23 2385.0 24 6272.0 25 13584.0 26 25133.0 27 41662.0 28 62375.0 29 87267.0 30 117425.0 31 154176.0 32 205898.0 33 282641.0 34 417244.0 35 648766.0 36 1181865.0 37 2219090.0 38 2628236.0 39 1063428.0 40 17213.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.165380408146454 20.482304168488984 13.87399094923601 24.478324474128556 2 14.267687982788042 21.154237036728645 42.25540873552024 22.32266624496307 3 17.983810312569105 26.54570993336819 30.623800930907574 24.846678823155134 4 12.275040439045645 18.40503521428389 39.03453944607935 30.28538490059112 5 12.960199783053946 38.033914686123005 35.99505119745916 13.010834333363885 6 29.357656684153365 38.45496915987007 19.12506559555863 13.062308560417938 7 25.967941641611937 32.619827043067254 23.611218431011274 17.801012884309536 8 23.859246375623815 37.464709311532275 21.606712775291893 17.069331537552017 9 25.30617413898349 16.722443346626953 21.290623730665935 36.68075878372362 10-11 23.86329516644127 26.846403916308713 29.459448826063184 19.830852091186834 12-13 24.74403968091311 24.306008793313538 29.312131351612713 21.63782017416064 14-15 21.885611294192014 25.767835856580216 26.647704964709057 25.69884788451871 16-17 21.727570192283014 28.94178106881392 27.306797015790913 22.023851723112156 18-19 21.819320611810983 28.14989114038471 28.705289333784823 21.325498914019487 20-21 22.478382303872394 27.427552605798912 28.474794081563914 21.619271008764787 22-23 22.10142800908142 27.58027050135884 28.371327812957496 21.94697367660224 24-25 22.046174961789603 27.60131472444169 28.463461461203586 21.889048852565125 26-27 22.04552803677927 27.783542791457794 28.388916487036354 21.782012684726578 28-29 21.819507978391822 27.727142497109973 28.447140449934473 22.006209074563728 30-31 22.161630422133214 27.641150434983576 28.41452680682227 21.78269233606094 32-33 21.795282077800852 27.626686723195252 28.61149258808649 21.966538610917404 34-35 21.829685548403187 27.737498417907346 28.489923272009964 21.9428927616795 36-37 21.92557623731939 27.71724736460769 28.500261067140443 21.856915330932484 38-39 21.868240501873174 27.685019701292862 28.513360165073244 21.933379631760722 40-41 22.047853200358908 27.54000956380478 28.47774426430838 21.93439297152793 42-43 22.0806464455715 27.584362016748447 28.386229656690148 21.94876188098991 44-45 21.98232544370908 27.883092391352974 28.17508841296204 21.9594937519759 46-47 22.210977080049087 27.596433221623613 27.864308481255556 22.328281217071748 48-49 22.116795707688524 27.661275769967585 27.94315045220464 22.278778070139246 50-51 22.00850004934371 27.833444315049043 27.944251657510797 22.213803978096447 52-53 22.144131686078577 27.84434262546105 27.957783880376823 22.05374180808355 54-55 22.089798643468118 27.78142237182432 27.82833279053845 22.300446194169112 56-57 22.276700824465596 27.964809605128966 27.59404902989404 22.1644405405114 58-59 22.021308606140323 28.17087511004942 27.891007152201563 21.91680913160869 60-61 22.295013240227384 28.26656528345689 27.4908139027222 21.947607573593526 62-63 22.1309905153068 28.331630720967237 27.46185927778676 22.0755194859392 64-65 22.14625218661435 28.19066166989934 27.545476027728572 22.11761011575774 66-67 22.227382576816215 28.128210950729116 27.40771856042547 22.2366879120292 68-69 22.216353183244042 27.987492226702837 27.567945543411515 22.228209046641602 70-71 22.228466515421857 27.748704638154393 27.640643492508854 22.382185353914892 72-73 22.26169685236767 27.815840988554726 27.608063935455927 22.314398223621676 74-75 22.18326494570037 27.925234696650293 27.572734540323847 22.318765817325495 76-77 22.225704631332572 27.911347152491782 27.505082982276768 22.357865233898874 78-79 22.22731842089188 27.930006052768935 27.460198516221094 22.38247701011809 80-81 22.191957432818523 27.915537809158202 27.51760355302925 22.374901204994018 82-83 22.265213787013728 27.85895769398868 27.60997210652414 22.265856412473457 84-85 22.440587871441085 27.83003139649637 27.468924503422613 22.26045622863993 86-87 22.19594006974361 27.898537428253377 27.579952283887206 22.325570218115807 88-89 22.26894060028597 27.87422667739107 27.49617822070631 22.360654501616654 90-91 22.315076194505185 27.887103321438232 27.521447087262867 22.276373396793716 92-93 22.312934906157825 27.84024334417795 27.537899356501725 22.308922393162497 94-95 22.132053764863464 27.94304820094105 27.562867068060743 22.36203096613474 96-97 22.177722633366827 27.921913528477667 27.629244060001163 22.27111977815435 98-99 22.416838534634074 28.534674081749845 27.64819218359263 21.40029520002345 100-101 23.170308809015005 31.1223206320226 24.70588823715963 21.001482321802765 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1375.0 1 1315.0 2 2050.5 3 3035.0 4 4263.5 5 6987.5 6 9075.5 7 10424.5 8 11301.0 9 11003.5 10 9953.0 11 8916.5 12 9544.0 13 12429.5 14 19071.0 15 27919.0 16 34969.5 17 38999.5 18 39850.5 19 38561.5 20 36799.0 21 35647.5 22 36898.0 23 42546.0 24 52602.5 25 66922.0 26 85750.0 27 106433.0 28 127204.5 29 149075.5 30 167597.5 31 185086.0 32 205681.5 33 226217.0 34 246154.0 35 265072.0 36 287264.0 37 308058.0 38 322035.5 39 332921.0 40 345649.5 41 358544.0 42 366832.5 43 374279.5 44 383051.5 45 390178.5 46 392892.5 47 396577.0 48 405804.5 49 402715.5 50 389757.5 51 378513.5 52 362794.5 53 342462.0 54 317222.5 55 289084.0 56 263029.0 57 237086.5 58 209076.0 59 180925.0 60 151680.5 61 122907.5 62 96423.0 63 73913.0 64 55014.0 65 41056.5 66 31021.0 67 23347.5 68 17653.5 69 12646.5 70 8756.0 71 6099.5 72 4229.0 73 2990.0 74 2082.0 75 1415.5 76 974.0 77 664.5 78 472.0 79 329.5 80 229.0 81 162.5 82 124.5 83 91.5 84 64.5 85 42.5 86 31.0 87 26.0 88 17.0 89 9.5 90 5.0 91 3.0 92 2.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010680524902025256 3 0.0025284507931325096 4 4.4683828671738315E-4 5 2.8336086474760883E-4 6 3.705488231314885E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 9.209228104297288E-4 14-15 7.247499040659996E-4 16-17 1.689266693687668E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.179466213487885E-5 28-29 2.1279230979504826E-4 30-31 4.9172269528070235E-5 32-33 0.0012106079273126898 34-35 0.0020169041850706883 36-37 0.001402350084773167 38-39 8.283391616351549E-4 40-41 6.162963547303211E-5 42-43 5.0824718590592154E-5 44-45 7.124166586496046E-4 46-47 3.455710604971097E-5 48-49 1.1638334789386002E-5 50-51 0.0 52-53 0.0011392056497005522 54-55 0.0038341656268489365 56-57 0.0069468868407854085 58-59 0.004943250322459796 60-61 2.975044582282667E-4 62-63 2.508298234402602E-5 64-65 1.6493745603385937E-4 66-67 1.7981291750311784E-4 68-69 0.0 70-71 1.6449638904106632E-4 72-73 6.655893880557854E-6 74-75 0.0 76-77 0.0 78-79 6.8867544847233885E-6 80-81 0.0 82-83 0.0 84-85 7.1492153485932384E-6 86-87 2.8953065127097084E-5 88-89 3.3739805077811325E-4 90-91 1.5626946391983644E-4 92-93 5.742923471464245E-4 94-95 3.0732167774894247E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 178.0 20-21 575.0 22-23 1324.0 24-25 3247.0 26-27 4531.0 28-29 8929.0 30-31 22929.0 32-33 27529.0 34-35 36940.0 36-37 57713.0 38-39 70445.0 40-41 69224.0 42-43 77136.0 44-45 90605.0 46-47 89954.0 48-49 87119.0 50-51 80900.0 52-53 78822.0 54-55 88661.0 56-57 92883.0 58-59 94460.0 60-61 95292.0 62-63 91046.0 64-65 93440.0 66-67 101249.0 68-69 89486.0 70-71 87692.0 72-73 84315.0 74-75 83842.0 76-77 82550.0 78-79 88893.0 80-81 91346.0 82-83 87367.0 84-85 85343.0 86-87 89325.0 88-89 95802.0 90-91 102020.0 92-93 105522.0 94-95 122872.0 96-97 180957.0 98-99 755425.0 100-101 5477691.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.57255487359394 #Duplication Level Percentage of deduplicated Percentage of total 1 89.33022084248688 75.54885004071487 2 7.360774463591261 12.450390044684418 3 1.8402339348767067 4.6689985631283 4 0.6864309942204635 2.322128917025832 5 0.31849264383985965 1.3467868298991272 6 0.162413952634909 0.8241457752871877 7 0.09321362182209215 0.5518319902560725 8 0.054176061021042325 0.36654463148298205 9 0.03457895948786539 0.263198785388335 >10 0.11718494437966745 1.4788110298110122 >50 0.0018486128717587456 0.10060702816416048 >100 3.892950870842733E-4 0.050585876538478895 >500 4.167368042449055E-5 0.02712048761918759 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0898494797984955E-5 2 0.0 4.359397919193982E-5 0.0 0.0 1.0898494797984955E-5 3 0.0 4.359397919193982E-5 0.0 1.0898494797984955E-5 1.0898494797984955E-5 4 0.0 5.4492473989924776E-5 0.0 2.179698959596991E-5 2.179698959596991E-5 5 0.0 5.4492473989924776E-5 0.0 2.179698959596991E-5 2.179698959596991E-5 6 0.0 5.4492473989924776E-5 0.0 2.179698959596991E-5 2.179698959596991E-5 7 0.0 5.4492473989924776E-5 0.0 2.179698959596991E-5 2.179698959596991E-5 8 0.0 5.4492473989924776E-5 0.0 2.179698959596991E-5 2.179698959596991E-5 9 0.0 9.80864531818646E-5 0.0 3.269548439395487E-5 2.179698959596991E-5 10-11 0.0 9.80864531818646E-5 0.0 5.4492473989924776E-5 2.179698959596991E-5 12-13 0.0 9.80864531818646E-5 0.0 5.4492473989924776E-5 2.179698959596991E-5 14-15 0.0 1.3078193757581948E-4 0.0 5.4492473989924776E-5 3.8144731792947345E-5 16-17 0.0 1.3078193757581948E-4 0.0 6.539096878790973E-5 5.4492473989924776E-5 18-19 0.0 1.471296797727969E-4 0.0 9.80864531818646E-5 5.994172138891726E-5 20-21 0.0 1.6347742196977434E-4 0.0 1.0898494797984955E-4 6.539096878790974E-5 22-23 1.0898494797984955E-5 1.7982516416675175E-4 0.0 1.25332690176827E-4 7.628946358589469E-5 24-25 2.179698959596991E-5 2.288683907576841E-4 0.0 1.3623118497481195E-4 8.718795838387964E-5 26-27 2.7246236994962388E-5 2.6156387515163896E-4 0.0 1.9617290636372918E-4 8.718795838387964E-5 28-29 3.269548439395487E-5 2.724623699496239E-4 0.0 5.122292555052929E-4 9.263720578287212E-5 30-31 3.269548439395487E-5 3.4875183353551856E-4 0.0 0.0016947159410866605 1.0353570058085708E-4 32-33 3.269548439395487E-5 3.4875183353551856E-4 0.0 0.004397542650986929 1.3623118497481195E-4 34-35 3.8144731792947345E-5 4.413890393183907E-4 0.0 0.008043089160912897 1.5257892717178938E-4 36-37 4.359397919193982E-5 5.394754925002553E-4 0.0 0.012991005799198065 1.6347742196977434E-4 38-39 4.359397919193982E-5 5.885187190911875E-4 0.0 0.02036928677743388 1.7437591676775928E-4 40-41 4.359397919193982E-5 6.430111930811124E-4 0.0 0.02878837400887726 1.7982516416675175E-4 42-43 4.359397919193982E-5 6.484604404801049E-4 0.0 0.03569801971079972 1.9617290636372918E-4 44-45 4.359397919193982E-5 6.757066774750672E-4 0.0 0.04308174993643453 2.3976688555566903E-4 46-47 4.9043226590932295E-5 7.029529144700296E-4 0.0 0.05096681092277665 2.5066538035365397E-4 48-49 5.4492473989924776E-5 7.084021618690221E-4 0.0 0.05878648094033085 2.5066538035365397E-4 50-51 5.4492473989924776E-5 8.010393676518943E-4 0.0 0.06697125053361755 2.5066538035365397E-4 52-53 7.084021618690222E-5 8.173871098488717E-4 0.0 0.07445306721243422 2.5066538035365397E-4 54-55 7.628946358589469E-5 8.282856046468567E-4 0.0 0.08131911893516475 2.5066538035365397E-4 56-57 7.628946358589469E-5 8.391840994448416E-4 0.0 0.08844673453304691 2.5066538035365397E-4 58-59 7.628946358589469E-5 8.44633346843834E-4 0.0 0.094893194206055 2.5066538035365397E-4 60-61 7.628946358589469E-5 8.609810890408114E-4 0.0 0.1012034226940883 2.5066538035365397E-4 62-63 7.628946358589469E-5 8.718795838387964E-4 0.0 0.10702866816361126 2.5066538035365397E-4 64-65 7.628946358589469E-5 9.427198000256986E-4 0.0 0.11270133470596241 2.5066538035365397E-4 66-67 7.628946358589469E-5 9.590675422226761E-4 0.0 0.1185102324332884 2.5611462775264646E-4 68-69 8.718795838387964E-5 9.863137792176383E-4 0.0 0.12441721661379626 2.779116173486164E-4 70-71 8.718795838387964E-5 0.0010026615214146159 0.0 0.13045498273187994 2.942593595455938E-4 72-73 8.718795838387964E-5 0.0010244585110105859 0.0 0.1351903787216044 3.160563491415637E-4 74-75 8.718795838387964E-5 0.0010517047480055482 0.0 0.13934270523963666 3.160563491415637E-4 76-77 8.718795838387964E-5 0.0011007479745964804 0.0 0.14304274422355256 3.160563491415637E-4 78-79 8.718795838387964E-5 0.0011334434589904353 0.0 0.1462632494363571 3.160563491415637E-4 80-81 9.263720578287212E-5 0.0011334434589904353 0.0 0.14762011203870623 3.160563491415637E-4 82-83 9.80864531818646E-5 0.0011334434589904353 0.0 0.1482140800051964 3.160563491415637E-4 84-85 9.80864531818646E-5 0.0011443419537884203 0.0 0.14869906302370672 3.160563491415637E-4 86-87 9.80864531818646E-5 0.0011661389433843903 0.0 0.14888978668267147 3.215055965405562E-4 88-89 9.80864531818646E-5 0.00120973292257633 0.0 0.1490151193728483 3.378533387375336E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9280 0.0 43.694077 1 CTTATAC 8545 0.0 35.19553 1 GTATCAA 16145 0.0 33.321613 1 TATACAC 11850 0.0 28.538347 3 TCAACGC 18335 0.0 28.468868 4 ATCAACG 18595 0.0 28.048954 3 CAACGCA 18870 0.0 27.505543 5 AACGCAG 19455 0.0 26.808039 6 TATCAAC 20120 0.0 26.278513 2 TTATACA 13190 0.0 24.14041 2 ACGCAGA 22515 0.0 23.05236 7 CGCAGAG 22865 0.0 22.681099 8 GTACATG 24600 0.0 22.672632 1 TACATGG 24705 0.0 21.980366 2 ACATGGG 24920 0.0 21.284243 3 ACATCTC 14090 0.0 21.164473 8 ACACATC 14320 0.0 21.147743 6 TACACAT 16275 0.0 20.571644 5 CATGGGG 17880 0.0 19.736664 4 CACATCT 15885 0.0 19.011196 7 >>END_MODULE