##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138812_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9734599 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.459305925185 34.0 31.0 34.0 31.0 34.0 2 32.648619835290596 34.0 31.0 34.0 31.0 34.0 3 32.728693703767355 34.0 31.0 34.0 31.0 34.0 4 36.18583908797887 37.0 35.0 37.0 35.0 37.0 5 36.00405738336011 37.0 35.0 37.0 35.0 37.0 6 36.07187763974664 37.0 35.0 37.0 35.0 37.0 7 36.07450096300834 37.0 35.0 37.0 35.0 37.0 8 36.06328190817105 37.0 35.0 37.0 35.0 37.0 9 37.92282907595886 39.0 38.0 39.0 35.0 39.0 10-11 37.80010126765366 39.0 38.0 39.0 35.0 39.0 12-13 37.80448773493392 39.0 38.0 39.0 35.0 39.0 14-15 39.13358043818754 40.0 39.0 41.0 36.0 41.0 16-17 39.11030361908077 40.0 38.5 41.0 36.0 41.0 18-19 39.18105825417154 40.0 39.0 41.0 36.0 41.0 20-21 39.197742885320736 40.0 39.0 41.0 36.0 41.0 22-23 39.16171832561778 40.0 39.0 41.0 36.0 41.0 24-25 39.13017173793331 40.0 39.0 41.0 36.0 41.0 26-27 39.04203532391123 40.0 39.0 41.0 36.0 41.0 28-29 38.980494776461754 40.0 38.5 41.0 35.5 41.0 30-31 38.850903045289485 40.0 38.0 41.0 35.0 41.0 32-33 38.72063587228194 40.0 38.0 41.0 35.0 41.0 34-35 38.68439780493892 40.0 38.0 41.0 35.0 41.0 36-37 38.63677336175927 40.0 38.0 41.0 35.0 41.0 38-39 38.57029948224424 40.0 38.0 41.0 35.0 41.0 40-41 38.48919914074091 40.0 38.0 41.0 34.0 41.0 42-43 38.504991801197434 40.0 38.0 41.0 34.0 41.0 44-45 38.44956388283417 40.0 38.0 41.0 34.0 41.0 46-47 38.4031478695716 40.0 38.0 41.0 34.0 41.0 48-49 38.36001716003787 40.0 38.0 41.0 34.0 41.0 50-51 38.30186420115511 40.0 38.0 41.0 34.0 41.0 52-53 38.05294129578711 40.0 37.0 41.0 33.0 41.0 54-55 37.90757377473814 40.0 37.0 41.0 33.0 41.0 56-57 37.81991342607848 39.5 37.0 41.0 33.0 41.0 58-59 37.694189084941975 39.0 36.5 41.0 33.0 41.0 60-61 37.5187443885118 39.0 36.0 41.0 33.0 41.0 62-63 37.27008423337794 39.0 35.5 40.0 32.0 41.0 64-65 37.03533662458564 39.0 35.0 40.0 32.0 41.0 66-67 36.77328021154949 38.0 35.0 40.0 32.0 41.0 68-69 36.5343595500043 37.5 35.0 40.0 31.5 41.0 70-71 36.22716167941227 37.0 35.0 39.5 31.0 41.0 72-73 35.931247814002504 36.5 35.0 39.0 31.0 41.0 74-75 35.48333356413161 36.0 34.0 39.0 31.0 40.0 76-77 33.5555369555353 34.5 32.0 36.5 28.0 39.0 78-79 34.7373261029699 35.0 34.0 37.0 30.0 39.0 80-81 34.705033205879104 35.0 34.0 37.0 31.0 39.0 82-83 34.433425447013676 35.0 34.0 36.5 30.5 39.0 84-85 34.1493029660047 35.0 34.0 36.0 30.0 37.0 86-87 33.91613042230354 35.0 34.0 36.0 30.0 37.0 88-89 33.77611859030121 35.0 34.0 35.0 30.0 37.0 90-91 33.60703520591866 35.0 34.0 35.0 30.0 36.0 92-93 33.568615691785645 35.0 34.0 35.0 30.0 36.0 94-95 33.43574207371844 35.0 33.0 35.0 30.0 36.0 96-97 33.45668823012472 35.0 33.0 35.0 30.0 35.5 98-99 33.55278461582846 35.0 33.0 35.0 30.0 35.0 100-101 32.283455812504066 34.0 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 10.0 20 40.0 21 173.0 22 706.0 23 2555.0 24 6678.0 25 14792.0 26 27113.0 27 45329.0 28 67399.0 29 95056.0 30 127671.0 31 168410.0 32 222471.0 33 304967.0 34 447568.0 35 702088.0 36 1275176.0 37 2368368.0 38 2769077.0 39 1072246.0 40 16702.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.82043862310096 20.21746350311913 14.019971444124202 23.942126429655705 2 14.506526836866113 21.100783697079077 42.0710522295904 22.321637236464404 3 18.406474619490364 26.127891671363933 30.312740032004097 25.152893677141602 4 12.43431394242494 18.056980889330205 39.24059449207884 30.268110676166017 5 13.095742067875479 37.98352077715677 35.810418158558974 13.110318996408774 6 29.702736974633844 38.36604981188641 18.937733498353904 12.993479715125844 7 26.41192513425566 32.56164943209268 23.47342710264696 17.552998331004698 8 23.954032415716352 37.55013431986258 21.24036131329087 17.25547195113019 9 25.36552353106687 17.007017957288227 21.376977110202485 36.25048140144242 10-11 23.985851908229606 26.966806747766398 29.285145695266955 19.76219564873705 12-13 24.83557450305614 24.393923673532285 29.343674559556217 21.426827263855362 14-15 21.92136560625132 25.910879623328075 26.868800605350916 25.298954165069688 16-17 21.519213209922576 29.042245891879492 27.522105062138458 21.916435836059478 18-19 21.555931579718898 28.369961618347094 29.037123152170928 21.036983649763076 20-21 22.397794564641483 27.53736914922824 28.84564186895956 21.219194417170716 22-23 22.039000557793706 27.437475784674163 28.756001881847393 21.767521775684738 24-25 21.8288141238455 27.57607581185402 28.819606481369675 21.775503582930803 26-27 21.826967278257076 27.706556268858666 28.745136474285232 21.721339978599023 28-29 21.734481575608132 27.841758182975006 28.757435619685122 21.666324621731736 30-31 22.04771895996399 27.705487247785705 28.615214899093683 21.63157889315662 32-33 21.832345250688586 27.853296415914414 28.587606220346938 21.72675211305006 34-35 21.92148320783135 27.87210007119496 28.55853526941243 21.647881451561254 36-37 21.952089277487698 27.7501785488405 28.582174293095026 21.71555788057678 38-39 21.766575044618868 27.917307183223294 28.641037495855354 21.675080276302484 40-41 22.0318661274228 27.78097385352573 28.51511572965707 21.672044289394396 42-43 21.904792615104192 27.899738076642677 28.352506007117213 21.842963301135914 44-45 21.97091197541727 27.979136168758977 28.18466612799955 21.86528572782421 46-47 22.010002776869015 27.93854792107989 28.007553818173296 22.043895483877797 48-49 22.0282467240397 27.98404204569307 28.026572965251784 21.961138265015443 50-51 21.97565835281707 28.13657358317186 27.919904856320404 21.967863207690666 52-53 22.14573056620111 28.053495143013457 27.798110994993507 22.002663295791926 54-55 22.11440610309701 27.957590453331584 27.820674474974528 22.107328968596878 56-57 22.073121587749757 28.09282980461037 27.810116830457687 22.02393177718218 58-59 22.075997046051214 28.103296110341546 27.791761428172002 22.028945415435235 60-61 22.14625236029692 28.04710829571905 27.80934813658165 21.997291207402384 62-63 22.101674346037708 28.070304227611075 27.76996315109908 22.058058275252137 64-65 22.06146242881626 28.073889252280576 27.780890051742286 22.08375826716088 66-67 22.18676486586016 28.1091028583205 27.59957163131078 22.10456064450856 68-69 22.103715027628546 28.097413651490616 27.678220903855845 22.120650417024994 70-71 22.110955460951207 27.855183778943033 27.759833280787298 22.274027479318462 72-73 22.16849406085688 27.896744999153277 27.727333596106014 22.20742734388383 74-75 22.07926592416575 28.023126958965626 27.658824703643326 22.238782413225294 76-77 22.112655682788642 28.031687751850924 27.65552965317093 22.200126912189504 78-79 22.115850549274274 28.04110702681271 27.55966326806828 22.28337915584473 80-81 22.12292583396133 28.014999441485728 27.595408814905436 22.26666590964751 82-83 22.146571516771324 27.977263387409778 27.68794301335 22.188222082468894 84-85 22.28494566077676 27.953603085186913 27.622534256200698 22.138916997835626 86-87 22.098410339643674 27.975012166610753 27.70003288916009 22.22654460458548 88-89 22.13564633523809 28.00637728050333 27.64429333081775 22.213683053440835 90-91 22.167869078218068 28.04148129940753 27.652454227241673 22.13819539513273 92-93 22.15566698443399 28.013229215780072 27.633808148839 22.197295650946934 94-95 22.02000511983348 28.059352299098993 27.677770830098464 22.242871750969062 96-97 22.058341698013116 28.094790068052383 27.730286397982262 22.116581835952235 98-99 22.29347440726213 28.635071559657288 27.78695077548 21.28450325760058 100-101 23.04380553263447 31.236952913034187 24.893216554965143 20.8260249993662 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2597.0 1 2196.5 2 2562.0 3 3560.5 4 4806.0 5 7589.5 6 9995.0 7 11845.5 8 13005.5 9 12729.0 10 11505.0 11 10318.0 12 11131.0 13 14523.0 14 22280.0 15 32548.0 16 40590.5 17 45215.5 18 46258.0 19 44336.5 20 41703.0 21 39863.5 22 40879.0 23 46472.5 24 56782.0 25 71986.5 26 92246.0 27 114182.0 28 135483.5 29 157270.5 30 176054.5 31 194419.5 32 215045.0 33 235931.5 34 257903.0 35 279065.5 36 302082.0 37 322632.5 38 337155.5 39 349834.5 40 363643.0 41 377000.0 42 386345.0 43 394477.0 44 403327.5 45 412193.5 46 418163.5 47 420715.0 48 418290.0 49 408204.0 50 395414.0 51 381286.0 52 361482.0 53 338873.5 54 315877.5 55 291573.5 56 266671.5 57 240362.5 58 213671.5 59 186572.0 60 157088.0 61 127857.5 62 101545.5 63 78707.0 64 59005.5 65 43659.0 66 32853.0 67 25092.5 68 19042.0 69 13693.5 70 9637.0 71 7019.5 72 5001.0 73 3428.5 74 2387.0 75 1641.0 76 1122.5 77 757.0 78 510.0 79 365.5 80 261.5 81 173.5 82 116.5 83 80.5 84 63.0 85 54.0 86 43.5 87 36.0 88 26.0 89 17.5 90 12.5 91 9.0 92 7.0 93 6.0 94 5.5 95 5.0 96 5.0 97 4.5 98 3.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010067184071988996 3 0.002259980097793448 4 3.8008756190162536E-4 5 3.903601987097774E-4 6 5.64995024448362E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0010169910440070516 14-15 8.218109446521629E-4 16-17 7.704477606114027E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.140262074205749E-5 28-29 2.0059737899464605E-4 30-31 4.120095001150536E-5 32-33 0.0012440786887513865 34-35 0.00202951484085316 36-37 0.001315345780490313 38-39 7.689016423111405E-4 40-41 4.7396926562096056E-5 42-43 4.2428744371164114E-5 44-45 7.11300810342763E-4 46-47 1.6201100151906916E-5 48-49 0.0 50-51 0.0 52-53 0.0010262970022530272 54-55 0.0036978758248822513 56-57 0.006604875143020951 58-59 0.004695824010546 60-61 2.646759201587826E-4 62-63 1.7423194348705605E-5 64-65 1.055007010521585E-4 66-67 2.2490844450715578E-4 68-69 5.980010022496798E-6 70-71 1.2693235623626223E-4 72-73 1.8327291334471785E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 2.6427602573784214E-5 88-89 3.077570293043567E-4 90-91 1.1530332132573588E-4 92-93 5.23108813653911E-4 94-95 3.357256584209647E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 243.0 20-21 965.0 22-23 1737.0 24-25 3473.0 26-27 5321.0 28-29 9331.0 30-31 21693.0 32-33 26464.0 34-35 35583.0 36-37 54484.0 38-39 65168.0 40-41 65216.0 42-43 74506.0 44-45 88968.0 46-47 89360.0 48-49 83383.0 50-51 77469.0 52-53 74185.0 54-55 79429.0 56-57 82960.0 58-59 84007.0 60-61 81711.0 62-63 78284.0 64-65 81389.0 66-67 86099.0 68-69 88642.0 70-71 88822.0 72-73 84314.0 74-75 85225.0 76-77 84025.0 78-79 90879.0 80-81 93463.0 82-83 89485.0 84-85 87848.0 86-87 92667.0 88-89 99771.0 90-91 106624.0 92-93 111762.0 94-95 131272.0 96-97 197039.0 98-99 825885.0 100-101 6025448.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.72738838964618 #Duplication Level Percentage of deduplicated Percentage of total 1 89.99122919521182 77.14713056879589 2 7.052898791329929 12.092531879144138 3 1.6984070121978347 4.3679999273514705 4 0.6007843639240449 2.0601469801817247 5 0.2691998489441774 1.1538900002435788 6 0.12735533137479868 0.6550703973755673 7 0.0804867106572825 0.4829940853305352 8 0.04983122375572354 0.3417520538270619 9 0.029124526693875233 0.22470926503954136 >10 0.09839854092188949 1.275715983803754 >50 0.001854891444932817 0.10651237030756919 >100 3.733335344006879E-4 0.05381862224753176 >500 3.748713862587616E-5 0.020583552038253752 >1k 1.874287061744392E-5 0.017144314313387216 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.081791042445611E-5 0.0 1.0272636808152035E-5 1.0272636808152035E-5 3 0.0 3.081791042445611E-5 0.0 3.081791042445611E-5 1.0272636808152035E-5 4 0.0 8.218109446521628E-5 0.0 6.163582084891221E-5 1.0272636808152035E-5 5 0.0 9.245373127336832E-5 0.0 6.163582084891221E-5 1.0272636808152035E-5 6 0.0 9.245373127336832E-5 0.0 6.163582084891221E-5 2.054527361630407E-5 7 0.0 1.0272636808152036E-4 0.0 7.190845765706425E-5 2.054527361630407E-5 8 0.0 1.129990048896724E-4 0.0 7.190845765706425E-5 2.054527361630407E-5 9 0.0 1.5408955212228053E-4 0.0 1.129990048896724E-4 3.081791042445611E-5 10-11 0.0 1.5408955212228053E-4 0.0 1.2327164169782443E-4 3.081791042445611E-5 12-13 0.0 1.5408955212228053E-4 0.0 1.3354427850597645E-4 3.081791042445611E-5 14-15 0.0 2.3113432818342081E-4 0.0 1.4381691531412848E-4 3.081791042445611E-5 16-17 0.0 2.3627064658749683E-4 0.0 2.1058905456711673E-4 4.109054723260814E-5 18-19 0.0 2.5681592020380093E-4 0.0 2.77361193820105E-4 4.109054723260814E-5 20-21 0.0 2.9277014903233305E-4 0.0 3.544059698812452E-4 4.622686563668416E-5 22-23 0.0 3.8008756190162536E-4 0.0 4.4685970115461356E-4 6.163582084891221E-5 24-25 0.0 4.879502483872217E-4 0.0 5.393134324279819E-4 7.190845765706425E-5 26-27 0.0 5.239044772157538E-4 0.0 6.214945268931981E-4 7.190845765706425E-5 28-29 0.0 5.239044772157538E-4 0.0 0.0010580815912396597 7.190845765706425E-5 30-31 0.0 6.779940293380343E-4 0.0 0.002023709451205951 7.190845765706425E-5 32-33 0.0 7.088119397624904E-4 0.0 0.004216917409746411 9.245373127336832E-5 34-35 0.0 7.961293526317827E-4 0.0 0.0069494388007148526 9.245373127336832E-5 36-37 0.0 8.783104470969991E-4 0.0 0.010775996011751485 9.759004967744433E-5 38-39 0.0 9.091283575214552E-4 0.0 0.01663653531080222 1.129990048896724E-4 40-41 0.0 9.964457703907474E-4 0.0 0.0230877512263217 1.2327164169782443E-4 42-43 0.0 0.0010169910440070516 0.0 0.02909724375909064 1.2327164169782443E-4 44-45 0.0 0.001124853730492648 0.0 0.03529164375440632 1.2840796010190044E-4 46-47 0.0 0.0012121711433619403 0.0 0.04211267459501927 1.4895323371820452E-4 48-49 0.0 0.0012173074617660164 0.0 0.048815570112338474 1.5408955212228053E-4 50-51 0.0 0.0013354427850597646 0.0 0.05596532533081229 1.5408955212228053E-4 52-53 0.0 0.0013457154218679166 0.0 0.062303542241442106 2.054527361630407E-4 54-55 0.0 0.0013508517402719927 0.0 0.06909889149003468 2.568159202038009E-4 56-57 0.0 0.0013765333322923728 0.0 0.07645409944467152 2.568159202038009E-4 58-59 0.0 0.0013816696506964488 0.0 0.08319294919081927 2.568159202038009E-4 60-61 0.0 0.001391942287504601 0.0 0.09011157008110966 2.568159202038009E-4 62-63 0.0 0.001412487561120905 0.0 0.09604401783781746 2.670885570119529E-4 64-65 0.0 0.001489532337182045 0.0 0.10199187454973749 2.670885570119529E-4 66-67 0.0 0.0014946686555861212 0.0 0.10808354817697165 2.7222487541602895E-4 68-69 0.0 0.0015665771132431856 0.0 0.11438581085877292 2.77361193820105E-4 70-71 0.0 0.0016076676604757935 0.0 0.12028230438665219 2.77361193820105E-4 72-73 0.0 0.0016230766156880216 0.0 0.12460194816448011 3.0817910424456107E-4 74-75 0.0 0.0016693034813247058 0.0 0.12823332527616188 3.0817910424456107E-4 76-77 0.0 0.001730939302173618 0.0 0.13153084169157866 3.0817910424456107E-4 78-79 0.0 0.0017566208941939981 0.0 0.1346074964156202 3.0817910424456107E-4 80-81 0.0 0.0017566208941939981 0.0 0.13600971133993295 3.184517410527131E-4 82-83 0.0 0.0017617572125980742 0.0 0.13668256905086693 3.389970146690172E-4 84-85 0.0 0.00176689353100215 0.0 0.13725783671212344 3.389970146690172E-4 86-87 0.0 0.0017874388046184542 0.0 0.1375146526323272 3.389970146690172E-4 88-89 0.0 0.0018798925358918226 0.0 0.13756087949796392 3.389970146690172E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13325 0.0 35.230618 1 GTATCAA 21110 0.0 31.613297 1 TCAACGC 23230 0.0 27.70122 4 ATCAACG 23260 0.0 27.648046 3 CAACGCA 23620 0.0 27.225534 5 AACGCAG 24555 0.0 26.345919 6 TATCAAC 26045 0.0 25.231022 2 ACGCAGA 28470 0.0 22.633314 7 CGCAGAG 28895 0.0 22.27095 8 GTACATG 26855 0.0 21.680677 1 TACATGG 26125 0.0 21.553383 2 ACATGGG 26790 0.0 20.605204 3 TATACCG 885 0.0 18.754831 5 CATGGGG 18380 0.0 18.524256 4 GCAGAGT 34635 0.0 18.445326 9 AGAGTAC 28935 0.0 17.952923 10-11 GAGTACT 18485 0.0 17.821056 12-13 CAGAGTA 32365 0.0 16.780153 10-11 AGTACTT 20740 0.0 15.934728 12-13 GTACTTT 21200 0.0 15.549302 14-15 >>END_MODULE