##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138809_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11538095 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45782557692583 33.0 31.0 34.0 31.0 34.0 2 32.64196056628066 34.0 31.0 34.0 31.0 34.0 3 32.72203609001313 34.0 31.0 34.0 31.0 34.0 4 36.185577948526166 37.0 35.0 37.0 35.0 37.0 5 36.00677338850131 37.0 35.0 37.0 35.0 37.0 6 36.07525341055001 37.0 35.0 37.0 35.0 37.0 7 36.0759126181575 37.0 35.0 37.0 35.0 37.0 8 36.06583868480889 37.0 35.0 37.0 35.0 37.0 9 37.92625255728957 39.0 38.0 39.0 35.0 39.0 10-11 37.80336177679244 39.0 38.0 39.0 35.0 39.0 12-13 37.8069182131019 39.0 38.0 39.0 35.0 39.0 14-15 39.1251999571853 40.0 38.5 41.0 36.0 41.0 16-17 39.102147841563095 40.0 38.0 41.0 36.0 41.0 18-19 39.18006633677396 40.0 39.0 41.0 36.0 41.0 20-21 39.200652358827014 40.0 39.0 41.0 36.0 41.0 22-23 39.16062076725848 40.0 39.0 41.0 36.0 41.0 24-25 39.12821364796909 40.0 39.0 41.0 36.0 41.0 26-27 39.03981868122463 40.0 39.0 41.0 36.0 41.0 28-29 38.977072924487906 40.0 38.5 41.0 35.0 41.0 30-31 38.842223560481926 40.0 38.0 41.0 35.0 41.0 32-33 38.70774980251098 40.0 38.0 41.0 35.0 41.0 34-35 38.666807322290424 40.0 38.0 41.0 35.0 41.0 36-37 38.619438638736355 40.0 38.0 41.0 35.0 41.0 38-39 38.55055088550782 40.0 38.0 41.0 35.0 41.0 40-41 38.46978919717047 40.0 38.0 41.0 34.0 41.0 42-43 38.489360550668465 40.0 38.0 41.0 34.0 41.0 44-45 38.429465084630074 40.0 38.0 41.0 34.0 41.0 46-47 38.38296903272988 40.0 38.0 41.0 34.0 41.0 48-49 38.33753914421527 40.0 38.0 41.0 34.0 41.0 50-51 38.27635875139761 40.0 38.0 41.0 34.0 41.0 52-53 38.02767484181914 40.0 37.0 41.0 33.0 41.0 54-55 37.88093556545197 40.0 37.0 41.0 33.0 41.0 56-57 37.78289615779306 39.0 37.0 41.0 33.0 41.0 58-59 37.64882168414519 39.0 36.0 41.0 33.0 41.0 60-61 37.4641600661858 39.0 36.0 41.0 33.0 41.0 62-63 37.21367264215978 39.0 35.0 40.0 32.0 41.0 64-65 36.97148008696263 38.5 35.0 40.0 32.0 41.0 66-67 36.70671747864796 38.0 35.0 40.0 32.0 41.0 68-69 36.46540316751771 37.0 35.0 40.0 31.5 41.0 70-71 36.1566218134258 37.0 35.0 39.0 31.0 41.0 72-73 35.86506947252266 36.0 34.5 39.0 31.0 41.0 74-75 35.41722454828758 36.0 34.0 39.0 31.0 40.0 76-77 33.500752162264895 34.5 32.0 36.5 28.0 39.0 78-79 34.688678039913725 35.0 34.0 37.0 30.0 39.0 80-81 34.66430695519921 35.0 34.0 37.0 31.0 39.0 82-83 34.40121790764415 35.0 34.0 36.0 30.5 38.5 84-85 34.12871580085937 35.0 34.0 36.0 30.0 37.0 86-87 33.9056323389713 35.0 34.0 35.5 30.0 37.0 88-89 33.77447758988188 35.0 34.0 35.0 30.0 36.5 90-91 33.60879470576598 35.0 34.0 35.0 30.0 36.0 92-93 33.57524166313299 35.0 34.0 35.0 30.0 36.0 94-95 33.44999435249426 35.0 33.0 35.0 30.0 36.0 96-97 33.46933852385044 35.0 33.0 35.0 30.0 35.5 98-99 33.563191883818575 35.0 33.0 35.0 30.0 35.0 100-101 32.28238591362789 34.0 31.5 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 7.0 20 49.0 21 210.0 22 884.0 23 3006.0 24 7800.0 25 16936.0 26 31700.0 27 51787.0 28 77753.0 29 108773.0 30 146963.0 31 194369.0 32 258988.0 33 356954.0 34 531095.0 35 836682.0 36 1525188.0 37 2819713.0 38 3213187.0 39 1333127.0 40 22917.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.99188860899481 20.14111514942458 13.972713866543826 23.89428237503678 2 14.615857370045488 21.160889971616253 41.890836501937386 22.332416156400868 3 18.188426497798023 26.4297868121178 30.45359411548333 24.928192574600853 4 12.443432796159765 18.03588753242967 39.070671065100626 30.450008606309943 5 13.098176718214125 38.089316895303114 35.64410110867174 13.168405277811027 6 29.620762015567298 38.18373878664923 18.99314371809681 13.202355479686656 7 26.406560181728437 32.760694031380396 23.383894828392382 17.44885095849878 8 24.30119530130407 37.04889758664667 21.315719796032187 17.334187316017072 9 25.83509669490501 16.69458433129559 21.23222247693402 36.23809649686539 10-11 24.153086976363387 26.84330588556022 29.137878875927044 19.86572826214935 12-13 25.03491946941127 24.394924205077217 29.15408213710966 21.416074188401847 14-15 22.187199295198322 25.694970032711485 26.771170647246194 25.346660024844 16-17 21.67790033131142 28.788515808556483 27.44557655008148 22.088007310050617 18-19 21.736733836911554 28.038723030101593 29.069231099241254 21.155312033745606 20-21 22.672072391821036 27.218532528064898 28.827418302544235 21.281976777569838 22-23 22.319570590245984 27.16645288087282 28.696635336505572 21.81734119237562 24-25 22.000098139136327 27.34073977489032 28.835436967105355 21.823725118867994 26-27 21.957642292456185 27.520450890025437 28.722536366532953 21.79937045098542 28-29 21.89428044679924 27.564372781415038 28.77174033735183 21.769606434433893 30-31 22.2075618151047 27.45755775202378 28.589323509629327 21.745556923242187 32-33 22.070690352267444 27.58486619627144 28.522024106313914 21.8224193451472 34-35 22.060117269996457 27.578186556363494 28.58897784462819 21.772718329011862 36-37 22.07269954957629 27.536293335063945 28.558583928418347 21.832423186941416 38-39 21.91069834806273 27.61418072429489 28.655275411975335 21.819845515667048 40-41 22.16637276887588 27.51036791637248 28.50451366510963 21.81874564964201 42-43 22.081381011985115 27.575995534277236 28.341766557636344 22.000856896101304 44-45 22.115994927295784 27.75801019086277 28.161803809982683 21.964191071858764 46-47 22.207814582414077 27.658400409803686 27.909146692738396 22.224638315043848 48-49 22.159377213792755 27.747638547399774 27.882942908705544 22.210041330101934 50-51 22.12845026867137 27.856591275201215 27.787732053015535 22.227226403111885 52-53 22.31230772709747 27.803476451801153 27.628693269220356 22.255522551881022 54-55 22.330353934156786 27.661769004244878 27.66958608212711 22.33829097947122 56-57 22.306187407440863 27.811783270823952 27.608117391728094 22.27391193000709 58-59 22.22171963482654 27.91668949977896 27.643251430612025 22.218339434782475 60-61 22.374557857108865 27.85597598349237 27.556945691968483 22.21252046743028 62-63 22.31088231059526 27.911462671320404 27.48877811856194 22.28887689952239 64-65 22.273721987329708 27.86065236283399 27.522496451240446 22.34312919859586 66-67 22.40321667812238 27.844721729881567 27.380531695048184 22.371529896947873 68-69 22.33837021021698 27.826522520989904 27.475581167003487 22.35952610178963 70-71 22.359487727374276 27.572750632900927 27.549641278477516 22.51812036124728 72-73 22.42854848071439 27.621324074899945 27.48956392315985 22.46056352122581 74-75 22.278728277522262 27.779734792194482 27.45708557023499 22.48445136004826 76-77 22.37038666712351 27.68684171310376 27.432850986478474 22.509920633294257 78-79 22.350041766840295 27.731477186759214 27.37162148549142 22.54685956090907 80-81 22.375136169053583 27.6806275657504 27.407041037698665 22.537195227497353 82-83 22.460539401322308 27.602394810894154 27.497136587207887 22.439929200575655 84-85 22.55405462905083 27.582450541091134 27.41763075316883 22.4458640766892 86-87 22.353237437280587 27.60935464963788 27.488324750371813 22.54908316270972 88-89 22.454232084532848 27.583708523127815 27.42625188731761 22.535807505021726 90-91 22.497011039868873 27.523110205852575 27.52011521959215 22.4597635346864 92-93 22.52696081540987 27.46020792463763 27.499783489726383 22.51304777022612 94-95 22.35767723054728 27.500318418492576 27.563315668517518 22.57868868244263 96-97 22.373311682766513 27.51421455728712 27.618021292839636 22.494452467106733 98-99 22.632398422662202 28.108138281541773 27.6475298608333 21.611933434962726 100-101 23.45410653372611 30.67350277822435 24.652658714226156 21.219731973823382 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2027.0 1 1881.5 2 2876.0 3 4400.0 4 6366.5 5 10508.0 6 13818.0 7 16153.0 8 17776.5 9 17481.5 10 15795.0 11 14161.0 12 15479.0 13 20675.5 14 32184.0 15 47223.0 16 58350.5 17 63592.5 18 63621.5 19 59825.5 20 54998.5 21 51082.0 22 50810.0 23 57175.0 24 69755.0 25 88282.0 26 112435.0 27 137476.5 28 160878.0 29 184867.0 30 206408.5 31 227058.5 32 250451.5 33 275721.0 34 301477.5 35 326665.0 36 354862.0 37 377955.5 38 393579.0 39 407124.0 40 422494.5 41 438814.0 42 450258.5 43 462264.0 44 474235.0 45 482074.0 46 488599.0 47 495082.5 48 495559.0 49 489709.5 50 481787.0 51 468364.5 52 448898.0 53 428152.5 54 405186.5 55 377125.0 56 346011.5 57 312944.0 58 280203.5 59 245767.0 60 207194.5 61 169517.0 62 134732.0 63 104537.5 64 79195.0 65 58608.0 66 43335.5 67 32802.0 68 24910.5 69 17732.0 70 12463.5 71 8958.0 72 6294.0 73 4227.5 74 2854.5 75 1981.0 76 1383.0 77 948.5 78 639.5 79 434.5 80 302.0 81 204.0 82 149.5 83 117.5 84 91.0 85 69.5 86 51.5 87 40.5 88 28.5 89 18.0 90 14.0 91 10.5 92 8.0 93 4.5 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001334709065924661 3 0.0025220801180784176 4 4.246801573396648E-4 5 4.6801486727228366E-4 6 5.460173451509977E-4 7 0.0 8 0.0 9 0.0 10-11 4.333470993261886E-6 12-13 0.001031366096396329 14-15 8.450268436860679E-4 16-17 6.933553589219017E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.769834043164136E-5 28-29 1.95257007687225E-4 30-31 8.691081420831896E-6 32-33 0.0012505333284996807 34-35 0.0020287909927276587 36-37 0.0013489109850565268 38-39 7.124793862233481E-4 40-41 2.2306663352788758E-5 42-43 2.24977921791645E-5 44-45 6.318113180497721E-4 46-47 9.198322078879658E-6 48-49 0.0 50-51 0.0 52-53 0.0011116525798748507 54-55 0.00406433140836617 56-57 0.0066457937001077345 58-59 0.00495967017948021 60-61 2.0345193423242547E-4 62-63 1.5055011010231386E-5 64-65 7.611546838338508E-5 66-67 2.156606610307347E-4 68-69 0.0 70-71 1.2110150559710097E-4 72-73 2.1325584468960693E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.507264626447967E-5 88-89 4.0333790588026927E-4 90-91 1.5667911622854565E-4 92-93 6.1903474219103E-4 94-95 3.1202106716322116E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 196.0 20-21 727.0 22-23 1565.0 24-25 3628.0 26-27 6055.0 28-29 12949.0 30-31 29532.0 32-33 36952.0 34-35 49661.0 36-37 75127.0 38-39 91753.0 40-41 93075.0 42-43 105968.0 44-45 127087.0 46-47 126317.0 48-49 118726.0 50-51 108340.0 52-53 103292.0 54-55 111268.0 56-57 114592.0 58-59 115952.0 60-61 114380.0 62-63 109547.0 64-65 113652.0 66-67 121286.0 68-69 120212.0 70-71 119162.0 72-73 114448.0 74-75 115248.0 76-77 113629.0 78-79 121628.0 80-81 123195.0 82-83 117656.0 84-85 117528.0 86-87 122335.0 88-89 130044.0 90-91 139135.0 92-93 140901.0 94-95 160600.0 96-97 229554.0 98-99 939175.0 100-101 6722018.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.77389013100945 #Duplication Level Percentage of deduplicated Percentage of total 1 89.96032673016265 77.16247181102685 2 7.067814999051726 12.12467974389927 3 1.7305063875933069 4.452967942813151 4 0.6042324293169248 2.0730946402329136 5 0.2584494512219905 1.108410741676735 6 0.1356900338903865 0.6983197235272176 7 0.07828780345529597 0.4700534616520833 8 0.047239673575846054 0.32415444568954954 9 0.02799978592988166 0.21614855058373086 >10 0.08747012467627965 1.1195164093413574 >50 0.0014728113726999884 0.08301620245868846 >100 3.846093069156019E-4 0.05355938584630036 >500 7.822706793901171E-5 0.049384270545869795 >1k 4.693337820563782E-5 0.06422267070630874 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.666941986523772E-6 2 0.0 6.06685939056664E-5 0.0 8.666941986523772E-6 1.7333883973047543E-5 3 0.0 6.06685939056664E-5 0.0 1.7333883973047543E-5 1.7333883973047543E-5 4 0.0 1.3867107178438035E-4 0.0 1.7333883973047543E-5 2.6000825959571315E-5 5 0.0 1.3867107178438035E-4 0.0 1.7333883973047543E-5 2.6000825959571315E-5 6 1.7333883973047543E-5 1.3867107178438035E-4 0.0 2.6000825959571315E-5 6.06685939056664E-5 7 1.7333883973047543E-5 1.3867107178438035E-4 0.0 2.6000825959571315E-5 6.06685939056664E-5 8 1.7333883973047543E-5 1.560049557574279E-4 0.0 3.466776794609509E-5 6.06685939056664E-5 9 1.7333883973047543E-5 2.3400743363614183E-4 0.0 5.200165191914263E-5 1.3000412979785657E-4 10-11 1.7333883973047543E-5 2.3400743363614183E-4 0.0 9.533636185176148E-5 1.3867107178438035E-4 12-13 1.7333883973047543E-5 2.3400743363614183E-4 0.0 1.3433760079111846E-4 1.4733801377090413E-4 14-15 1.7333883973047543E-5 2.9467602754180825E-4 0.0 1.560049557574279E-4 1.9500619469678485E-4 16-17 1.7333883973047543E-5 2.9900949853507014E-4 0.0 1.863392527102611E-4 2.2534049164961808E-4 18-19 1.7333883973047543E-5 3.2934379548790337E-4 0.0 2.0800660767657052E-4 2.426743756226656E-4 20-21 1.7333883973047543E-5 3.640115634339984E-4 0.0 2.3834090462940372E-4 2.5567478860245125E-4 22-23 1.7333883973047543E-5 4.376805703194505E-4 0.0 2.730086725754988E-4 2.860090855552845E-4 24-25 2.166735496630943E-5 4.983491642251168E-4 0.0 3.856789184003078E-4 2.9900949853507014E-4 26-27 2.6000825959571315E-5 5.330169321712119E-4 0.0 6.500206489892828E-4 3.0334296952833203E-4 28-29 2.6000825959571315E-5 5.503508161442595E-4 0.0 0.0024830788791390607 3.0334296952833203E-4 30-31 2.6000825959571315E-5 6.500206489892828E-4 0.0 0.006383202773074758 3.0334296952833203E-4 32-33 2.6000825959571315E-5 6.500206489892828E-4 0.0 0.014850805093908483 3.2067685350137953E-4 34-35 2.6000825959571315E-5 7.713578368006156E-4 0.0 0.022529715693968545 3.2067685350137953E-4 36-37 2.6000825959571315E-5 8.926950246119485E-4 0.0 0.03329839111222434 3.2067685350137953E-4 38-39 2.6000825959571315E-5 9.273627925580435E-4 0.0 0.05014259286303328 3.250103244946414E-4 40-41 2.6000825959571315E-5 0.0010486999803693763 0.0 0.06615476818313595 3.5534462144747465E-4 42-43 2.6000825959571315E-5 0.0010747008063289477 0.0 0.07735245722972467 3.5967809244073654E-4 44-45 2.6000825959571315E-5 0.0011960379941402806 0.0 0.08977218509641323 3.640115634339984E-4 46-47 2.6000825959571315E-5 0.0012827074140055181 0.0 0.10245625469369077 3.640115634339984E-4 48-49 2.6000825959571315E-5 0.0012827074140055181 0.0 0.11382728258000996 3.986793313800935E-4 50-51 2.6000825959571315E-5 0.0014430458407562081 0.0 0.12435761709363635 4.1167974435987915E-4 52-53 2.6000825959571315E-5 0.0014560462537359937 0.0 0.13341457146955368 4.5068098329923616E-4 54-55 2.6000825959571315E-5 0.0014690466667157793 0.0 0.1428485378218848 4.896822222385932E-4 56-57 2.6000825959571315E-5 0.001482047079695565 0.0 0.15181015583595037 4.94015693231855E-4 58-59 2.6000825959571315E-5 0.0014907140216820888 0.0 0.16046409740949438 4.983491642251169E-4 60-61 2.6000825959571315E-5 0.0015123813766483984 0.0 0.1686456906447728 5.026826352183787E-4 62-63 2.6000825959571315E-5 0.0015427156736012315 0.0 0.17641560413569138 5.113495772049025E-4 64-65 2.6000825959571315E-5 0.0017247214553182306 0.0 0.18427652051746846 5.286834611779501E-4 66-67 3.466776794609509E-5 0.001750722281277802 0.0 0.19244077986877384 5.330169321712119E-4 68-69 3.466776794609509E-5 0.0018113908751834684 0.0 0.20025836154061827 5.416838741577357E-4 70-71 3.466776794609509E-5 0.0018417251721363015 0.0 0.2073262527306284 5.850185840903546E-4 72-73 4.766818092588074E-5 0.0018460586431295635 0.0 0.2126260877553877 6.586875909758066E-4 74-75 5.200165191914263E-5 0.0018937268240554442 0.0 0.2167558856119663 6.586875909758066E-4 76-77 5.200165191914263E-5 0.0019717293019341584 0.0 0.22068201033186152 6.760214749488542E-4 78-79 5.200165191914263E-5 0.0019933966569004673 0.0 0.22416178753945082 7.020223009084255E-4 80-81 5.200165191914263E-5 0.001997730127893729 0.0 0.22573050403901163 7.106892428949493E-4 82-83 5.200165191914263E-5 0.002015064011866777 0.0 0.2263501903910481 7.583574238208301E-4 84-85 5.200165191914263E-5 0.00204539830881961 0.0 0.22694387591712495 7.843582497804014E-4 86-87 5.200165191914263E-5 0.0020713991347791815 0.0 0.2271648829377813 7.886917207736632E-4 88-89 5.200165191914263E-5 0.0021970697935837762 0.0 0.2272472188866533 7.886917207736632E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13835 0.0 48.43214 1 GTATCAA 25390 0.0 37.052208 1 ATCAACG 30490 0.0 29.963612 3 TCAACGC 30565 0.0 29.957644 4 CAACGCA 31330 0.0 29.185648 5 TATCAAC 32375 0.0 28.529058 2 AACGCAG 32265 0.0 28.40511 6 ACGCAGA 37505 0.0 24.358429 7 CGCAGAG 37895 0.0 24.096716 8 GTACATG 39240 0.0 23.03757 1 TACATGG 38720 0.0 22.872253 2 ACATGGG 38985 0.0 22.030704 3 GCAGAGT 45420 0.0 20.030981 9 CATGGGG 25670 0.0 19.73906 4 GAGTACT 24165 0.0 18.358082 12-13 AGAGTAC 40435 0.0 17.954973 10-11 GTGGTAT 6810 0.0 17.850662 1 CAGAGTA 43535 0.0 17.823078 10-11 GTACTTT 27525 0.0 16.026318 14-15 TGGTATC 6735 0.0 15.816523 2 >>END_MODULE