##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138808_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10249139 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45361722579818 34.0 31.0 34.0 31.0 34.0 2 32.63901104278125 34.0 31.0 34.0 31.0 34.0 3 32.71805036501115 34.0 31.0 34.0 31.0 34.0 4 36.18026382508814 37.0 35.0 37.0 35.0 37.0 5 36.00178932103467 37.0 35.0 37.0 35.0 37.0 6 36.06847941080709 37.0 35.0 37.0 35.0 37.0 7 36.06735092577045 37.0 35.0 37.0 35.0 37.0 8 36.052257365228435 37.0 35.0 37.0 35.0 37.0 9 37.911800688818836 39.0 38.0 39.0 35.0 39.0 10-11 37.78662266166943 39.0 37.5 39.0 35.0 39.0 12-13 37.79140286808482 39.0 38.0 39.0 35.0 39.0 14-15 39.116443683708454 40.0 38.5 41.0 36.0 41.0 16-17 39.09039120261711 40.0 38.0 41.0 36.0 41.0 18-19 39.16067330143537 40.0 38.5 41.0 36.0 41.0 20-21 39.17809539790959 40.0 39.0 41.0 36.0 41.0 22-23 39.14165482637607 40.0 39.0 41.0 36.0 41.0 24-25 39.11192157502643 40.0 39.0 41.0 36.0 41.0 26-27 39.02144963850428 40.0 39.0 41.0 36.0 41.0 28-29 38.95879011088652 40.0 38.5 41.0 35.0 41.0 30-31 38.82819181855683 40.0 38.0 41.0 35.0 41.0 32-33 38.69975434764871 40.0 38.0 41.0 35.0 41.0 34-35 38.662051991688365 40.0 38.0 41.0 35.0 41.0 36-37 38.6156268765079 40.0 38.0 41.0 35.0 41.0 38-39 38.54703736753405 40.0 38.0 41.0 35.0 41.0 40-41 38.464584825179806 40.0 38.0 41.0 34.0 41.0 42-43 38.48527880067266 40.0 38.0 41.0 34.0 41.0 44-45 38.4302504883274 40.0 38.0 41.0 34.0 41.0 46-47 38.38293518155271 40.0 38.0 41.0 34.0 41.0 48-49 38.33983743252129 40.0 38.0 41.0 34.0 41.0 50-51 38.283538729892506 40.0 38.0 41.0 34.0 41.0 52-53 38.03366691664239 40.0 37.0 41.0 33.0 41.0 54-55 37.88982660634577 40.0 37.0 41.0 33.0 41.0 56-57 37.796998312468645 39.5 37.0 41.0 33.0 41.0 58-59 37.66795510374476 39.0 36.0 41.0 33.0 41.0 60-61 37.484834094449226 39.0 36.0 41.0 33.0 41.0 62-63 37.234452429273155 39.0 35.5 40.0 32.0 41.0 64-65 36.9970477817885 38.5 35.0 40.0 32.0 41.0 66-67 36.73342920994606 38.0 35.0 40.0 31.5 41.0 68-69 36.49314236292402 37.5 35.0 40.0 31.0 41.0 70-71 36.18575034971138 37.0 35.0 39.5 31.0 41.0 72-73 35.894037123790724 36.5 34.5 39.0 31.0 41.0 74-75 35.44477909626667 36.0 34.0 39.0 30.5 40.0 76-77 33.50907788572216 34.5 32.0 36.5 27.5 39.0 78-79 34.70542669721026 35.0 34.0 37.0 30.0 39.0 80-81 34.67868882132129 35.0 34.0 37.0 31.0 39.0 82-83 34.405165044321066 35.0 34.0 36.5 30.0 39.0 84-85 34.12096034614429 35.0 34.0 36.0 30.0 37.0 86-87 33.88674995439143 35.0 34.0 36.0 30.0 37.0 88-89 33.747173108989266 35.0 34.0 35.0 30.0 36.5 90-91 33.58066399393471 35.0 33.5 35.0 30.0 36.0 92-93 33.54752072186079 35.0 34.0 35.0 30.0 36.0 94-95 33.418964029598406 35.0 33.0 35.0 30.0 36.0 96-97 33.43822894436737 35.0 33.0 35.0 30.0 35.5 98-99 33.536856036418 35.0 33.0 35.0 30.0 35.0 100-101 32.311302668369876 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 1.0 19 2.0 20 32.0 21 161.0 22 767.0 23 2630.0 24 6990.0 25 15406.0 26 28943.0 27 47837.0 28 71504.0 29 99531.0 30 133170.0 31 175102.0 32 232061.0 33 318770.0 34 469373.0 35 736396.0 36 1327071.0 37 2466468.0 38 2898706.0 39 1198310.0 40 19907.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.554460482432766 20.39738366289926 14.094941447758828 23.953214406909147 2 14.517102217167649 21.31172125496462 41.8361966634475 22.334979864420234 3 18.10882220042906 26.31562873729752 30.555690800646275 25.019858261627142 4 12.42230655487143 18.0669024923664 39.383496786789465 30.1272941659727 5 13.005990374967267 38.039876250694206 35.98699516094474 12.967138213393788 6 29.654820288540567 38.47804723460489 18.936557916912868 12.930574559941677 7 26.09243566703506 32.70560580747319 23.77674846638337 17.42521005910838 8 23.85501845569662 37.46920594988515 21.515826841649822 17.159948752768404 9 25.344304531336732 16.927197494345624 21.51036296805029 36.21813500626735 10-11 23.859030876547862 27.008900650962058 29.42478674791968 19.707281724570397 12-13 24.661198805761494 24.511628721573622 29.49334823163707 21.333824241027806 14-15 21.813285230088283 25.937890340446636 26.960412782979443 25.288411646485642 16-17 21.4887113616689 29.061064436429128 27.632860634790312 21.817363567111656 18-19 21.542678928575317 28.350865782524064 29.145849673121305 20.960605615779315 20-21 22.26690578269193 27.626799468428683 28.983545487010264 21.122749261869124 22-23 21.97343475914922 27.49337664448302 28.86319307382 21.669995522547755 24-25 21.765225365969634 27.581104670299517 28.97550266886179 21.678167294869056 26-27 21.75124183918386 27.773547423175454 28.803922844515277 21.67128789312541 28-29 21.702166312244024 27.872592447171733 28.807135237082253 21.618106003501982 30-31 21.97097648181229 27.692110124997022 28.74206301448496 21.594850378705726 32-33 21.756180194730128 27.843528022435265 28.705788861794414 21.694502921040193 34-35 21.833889975143258 27.861642257187707 28.71231572341638 21.592152044252654 36-37 21.859018588217914 27.804414047824437 28.693041485696664 21.643525878260984 38-39 21.698112596838186 27.9688823102482 28.739096172783103 21.593908920130517 40-41 21.960323590928382 27.812821742079656 28.571916025486566 21.654938641505396 42-43 21.82439527992706 27.900218563493322 28.454729642458133 21.82065651412148 44-45 21.91413981684425 27.96858374643896 28.321107695123963 21.79616874159283 46-47 21.934032665338517 27.922461193445454 28.118709746443482 22.02479639477255 48-49 21.88678114758552 28.037504782854615 28.12648375489174 21.94923031466812 50-51 21.9081995342825 28.139828505783292 27.994347148719363 21.957624811214846 52-53 22.080467002229696 28.02188479523094 27.836112371001132 22.061535831538233 54-55 22.039378868344244 27.916407646986002 27.905827560159473 22.138385924510278 56-57 21.979845206430113 28.01322906450267 27.93516953555638 22.071756193510836 58-59 21.98637778780322 28.027842372264512 27.929205075523512 22.056574764408758 60-61 22.06230804732259 27.96257769218291 27.92524769930743 22.049866561187066 62-63 22.001694035264478 28.007712300780852 27.900294403778105 22.09029926017657 64-65 21.967789294166014 27.96366947521295 27.897732935657466 22.170808294963578 66-67 22.050967810011674 28.060266084982228 27.71738655390989 22.17137955109621 68-69 21.97811147892432 28.06887738409664 27.778227364362362 22.174783772616678 70-71 22.007106695449803 27.886676689589578 27.81244675712261 22.293769857838004 72-73 22.035482086382256 27.859247139137842 27.77526026368587 22.330010510794036 74-75 21.984874883232557 27.917346892744447 27.740709271489177 22.357068952533815 76-77 22.036900037023347 27.89070528475998 27.735476399298527 22.336918278918148 78-79 22.066946854514025 27.858182976287125 27.65989147169802 22.41497869750083 80-81 22.088596764026263 27.887990411340297 27.60946699879539 22.41394582583805 82-83 22.137267461377665 27.81780724510895 27.69957682174805 22.345348471765337 84-85 22.213953589258335 27.78769552986644 27.67672927046096 22.321621610414265 86-87 22.07808265564045 27.83022431940882 27.748022797446154 22.34367022750457 88-89 22.098071725882416 27.802319917109486 27.731085882499762 22.368522474508335 90-91 22.169039928466425 27.712858735096923 27.803040975490756 22.3150603609459 92-93 22.1086126873846 27.6389415540924 27.880835483043143 22.37161027547986 94-95 22.029393733671284 27.685290814218945 27.931779897560638 22.353535554549136 96-97 22.030598739376885 27.71390784095597 27.955784742144346 22.299708677522805 98-99 22.270637441281416 28.285042304948284 28.015786007338583 21.42853424643172 100-101 26.38961387749621 35.282445561569745 28.67783506259187 9.65010549834217 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1906.0 1 1704.5 2 2394.0 3 3555.0 4 4794.5 5 7598.5 6 10137.0 7 12502.5 8 14388.0 9 14357.0 10 12763.5 11 11138.0 12 11954.0 13 15601.5 14 23918.5 15 34983.5 16 43467.5 17 47900.5 18 49049.0 19 47791.5 20 45689.0 21 45028.5 22 47396.5 23 54039.5 24 66055.0 25 84163.5 26 106662.5 27 129976.0 28 153285.0 29 177143.0 30 198437.0 31 218288.0 32 239704.0 33 260305.0 34 280677.5 35 300676.0 36 322952.0 37 343151.0 38 358340.0 39 370947.5 40 384555.5 41 399696.5 42 410058.5 43 418794.5 44 426233.0 45 432478.5 46 436204.5 47 436411.0 48 433831.5 49 426682.0 50 416541.5 51 403379.0 52 383957.5 53 361575.0 54 339670.5 55 314775.5 56 287741.5 57 259505.5 58 229967.0 59 199684.5 60 168002.0 61 136403.0 62 107682.5 63 82747.0 64 61700.5 65 45863.0 66 34276.5 67 25740.0 68 19472.0 69 14054.5 70 9902.0 71 7165.5 72 5029.0 73 3394.0 74 2290.0 75 1583.0 76 1074.5 77 724.5 78 507.0 79 371.0 80 275.0 81 189.0 82 133.5 83 94.5 84 69.0 85 49.5 86 33.5 87 24.5 88 19.0 89 15.0 90 10.5 91 9.5 92 8.5 93 4.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.756917142015539E-6 2 0.0011415593056158181 3 0.002497770788355978 4 4.293043542486837E-4 5 3.024644314024817E-4 6 4.195474371066682E-4 7 0.0 8 0.0 9 0.0 10-11 9.756917142015539E-6 12-13 9.512994213465151E-4 14-15 7.122549513671343E-4 16-17 6.3419961423101E-5 18-19 4.8784585710077695E-6 20-21 9.757181798055414E-6 22-23 9.757985850237459E-6 24-25 9.759872489217903E-6 26-27 4.881488920509005E-5 28-29 2.1487513142178134E-4 30-31 2.9341671193026972E-5 32-33 0.001171942729953797 34-35 0.0017221009316467635 36-37 0.0013795377955035475 38-39 6.423677695905489E-4 40-41 2.50895408077116E-5 42-43 4.5532986371977176E-5 44-45 5.873747225484422E-4 46-47 5.1634841704098485E-6 48-49 0.0 50-51 0.0 52-53 9.207372433584642E-4 54-55 0.003415586491913948 56-57 0.006296213925500659 58-59 0.004518914450486035 60-61 2.047749307667028E-4 62-63 3.355410067460519E-5 64-65 8.475126436173738E-5 66-67 1.4282342020729735E-4 68-69 0.0 70-71 1.3456972879694488E-4 72-73 1.184247962575396E-5 74-75 0.0 76-77 0.0 78-79 1.2272790756526733E-5 80-81 0.0 82-83 0.0 84-85 6.379570675308178E-6 86-87 2.5853593555784978E-5 88-89 3.473859697361276E-4 90-91 1.1978146271399375E-4 92-93 6.628669509689491E-4 94-95 3.9249699980802076E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 163.0 20-21 667.0 22-23 1396.0 24-25 3168.0 26-27 3996.0 28-29 9127.0 30-31 26403.0 32-33 32570.0 34-35 43886.0 36-37 66624.0 38-39 77423.0 40-41 79736.0 42-43 89361.0 44-45 104653.0 46-47 105128.0 48-49 98604.0 50-51 91043.0 52-53 82860.0 54-55 89537.0 56-57 91409.0 58-59 92885.0 60-61 95537.0 62-63 90226.0 64-65 95617.0 66-67 101472.0 68-69 103968.0 70-71 102987.0 72-73 98052.0 74-75 99257.0 76-77 97444.0 78-79 103842.0 80-81 105922.0 82-83 101502.0 84-85 100932.0 86-87 105711.0 88-89 112904.0 90-91 120779.0 92-93 125366.0 94-95 145817.0 96-97 206953.0 98-99 852822.0 100-101 6091390.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.42506484252894 #Duplication Level Percentage of deduplicated Percentage of total 1 90.39598861007427 78.12479177130177 2 6.8015166300669865 11.756430315621564 3 1.6158031290919834 4.189376706136075 4 0.563629594200288 1.9484689690371266 5 0.2697003091336042 1.1654433352460924 6 0.12047391525357598 0.6247179562574185 7 0.07720173358340135 0.4670515381630774 8 0.03985899098215188 0.2755852704152202 9 0.028633485002900444 0.22271857182389257 >10 0.08588195163577976 1.1002015546236965 >50 0.0010491183013562795 0.062043434575419505 >100 2.1133755996312716E-4 0.03019340097939745 >500 5.1195113722767674E-5 0.03297717581923746 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.756917142015539E-6 0.0 2 0.0 1.9513834284031078E-5 0.0 9.756917142015539E-6 0.0 3 0.0 1.9513834284031078E-5 0.0 9.756917142015539E-6 0.0 4 0.0 2.9270751426046616E-5 0.0 9.756917142015539E-6 0.0 5 0.0 2.9270751426046616E-5 0.0 9.756917142015539E-6 0.0 6 9.756917142015539E-6 2.9270751426046616E-5 0.0 9.756917142015539E-6 0.0 7 9.756917142015539E-6 2.9270751426046616E-5 0.0 1.9513834284031078E-5 0.0 8 9.756917142015539E-6 3.9027668568062156E-5 0.0 1.9513834284031078E-5 0.0 9 9.756917142015539E-6 9.756917142015539E-5 0.0 2.9270751426046616E-5 9.756917142015539E-6 10-11 9.756917142015539E-6 9.756917142015539E-5 0.0 5.366304428108546E-5 9.756917142015539E-6 12-13 9.756917142015539E-6 9.756917142015539E-5 0.0 7.805533713612431E-5 9.756917142015539E-6 14-15 9.756917142015539E-6 1.5611067427224863E-4 0.0 8.293379570713209E-5 3.9027668568062156E-5 16-17 1.9513834284031078E-5 1.5611067427224863E-4 0.0 1.3171838141720976E-4 3.9027668568062156E-5 18-19 1.9513834284031078E-5 1.6098913284325641E-4 0.0 1.90259884269303E-4 3.9027668568062156E-5 20-21 1.9513834284031078E-5 1.6586759141426418E-4 0.0 3.366136413995361E-4 3.9027668568062156E-5 22-23 1.9513834284031078E-5 2.097737185533341E-4 0.0 7.464041613641887E-4 4.3906127139069925E-5 24-25 1.9513834284031078E-5 2.53679845692404E-4 0.0 0.0018391788812699291 4.8784585710077694E-5 26-27 1.9513834284031078E-5 2.731936799764351E-4 0.0 0.004668684852454435 4.8784585710077694E-5 28-29 1.9513834284031078E-5 2.731936799764351E-4 0.0 0.030680625953067864 4.8784585710077694E-5 30-31 1.9513834284031078E-5 3.219782656865128E-4 0.0 0.04422810540475644 4.8784585710077694E-5 32-33 2.4392292855038847E-5 3.219782656865128E-4 0.0 0.04990175272283848 5.854150285209323E-5 34-35 2.9270751426046616E-5 4.049120613936449E-4 0.0 0.05671695934653633 7.317687856511654E-5 36-37 2.9270751426046616E-5 4.7808893995876143E-4 0.0 0.06683000396423544 7.805533713612431E-5 38-39 2.9270751426046616E-5 4.976027742427925E-4 0.0 0.08642677204397364 7.805533713612431E-5 40-41 3.414920999705439E-5 5.659011942369013E-4 0.0 0.12761071930042123 8.781225427813985E-5 42-43 3.9027668568062156E-5 5.951719456629479E-4 0.0 0.1445438490003892 8.781225427813985E-5 44-45 3.9027668568062156E-5 6.634703656570567E-4 0.0 0.16684328312846572 8.781225427813985E-5 46-47 3.9027668568062156E-5 7.024980342251188E-4 0.0 0.192123455443428 9.269071284914761E-5 48-49 3.9027668568062156E-5 7.024980342251188E-4 0.0 0.2150424538100225 9.756917142015539E-5 50-51 3.9027668568062156E-5 7.756749127902354E-4 0.0 0.23757605394950737 9.756917142015539E-5 52-53 3.9027668568062156E-5 7.903102885032586E-4 0.0 0.2678761601340366 1.0732608856217092E-4 54-55 3.9027668568062156E-5 7.903102885032586E-4 0.0 0.32873980926592955 1.1708300570418646E-4 56-57 3.9027668568062156E-5 7.903102885032586E-4 0.0 0.3933208438289304 1.1708300570418646E-4 58-59 3.9027668568062156E-5 8.000672056452743E-4 0.0 0.458999531570408 1.1708300570418646E-4 60-61 3.9027668568062156E-5 8.293379570713208E-4 0.0 0.5022421883438208 1.1708300570418646E-4 62-63 3.9027668568062156E-5 8.537302499263596E-4 0.0 0.5220633655178255 1.1708300570418646E-4 64-65 3.9027668568062156E-5 9.366640456334917E-4 0.0 0.5400404853519891 1.2196146427519424E-4 66-67 4.8784585710077694E-5 9.415425042044995E-4 0.0 0.5478655328998856 1.26839922846202E-4 68-69 4.8784585710077694E-5 9.708132556305461E-4 0.0 0.5554417790606606 1.26839922846202E-4 70-71 5.854150285209324E-5 9.805701727725617E-4 0.0 0.5624423671100567 1.26839922846202E-4 72-73 8.781225427813985E-5 9.854486313435695E-4 0.0 0.5678233069138783 1.26839922846202E-4 74-75 8.781225427813985E-5 0.0010000840070565928 0.0 0.5722285550034983 1.26839922846202E-4 76-77 8.781225427813985E-5 0.0010147193827696162 0.0 0.5760093603960293 1.26839922846202E-4 78-79 8.781225427813985E-5 0.0010244762999116316 0.0 0.5793511045171696 1.26839922846202E-4 80-81 8.781225427813985E-5 0.001034233217053647 0.0 0.5809561173870312 1.26839922846202E-4 82-83 8.781225427813985E-5 0.0010391116756246549 0.0 0.5815268970398391 1.26839922846202E-4 84-85 8.781225427813985E-5 0.0010439901341956627 0.0 0.5820976766926471 1.26839922846202E-4 86-87 8.781225427813985E-5 0.0010537470513376783 0.0 0.5823806272897655 1.26839922846202E-4 88-89 8.781225427813985E-5 0.001122045471331787 0.0 0.5824879533783277 1.26839922846202E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10770 0.0 44.775467 1 GTATCAA 18985 0.0 35.335262 1 TCAACGC 21985 0.0 29.672104 4 ATCAACG 22070 0.0 29.501017 3 CAACGCA 22715 0.0 28.662905 5 AACGCAG 23545 0.0 27.86671 6 TATCAAC 23850 0.0 27.563852 2 ACGCAGA 27170 0.0 24.08668 7 CGCAGAG 27520 0.0 23.765083 8 GTACATG 25915 0.0 20.634367 1 TACATGG 25625 0.0 20.32693 2 ACATGGG 25680 0.0 19.677876 3 GCAGAGT 33475 0.0 19.474771 9 GAGTACT 19130 0.0 18.224867 12-13 AGAGTAC 29410 0.0 17.710423 10-11 CAGAGTA 32260 0.0 17.285124 10-11 CATGGGG 18400 0.0 17.05321 4 GTGGTAT 5685 0.0 16.772945 1 TATACCG 680 0.0 16.060745 5 GTACTTT 22285 0.0 15.767546 14-15 >>END_MODULE