##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138807_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12378094 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45429837582426 34.0 31.0 34.0 31.0 34.0 2 32.64655721632103 34.0 31.0 34.0 31.0 34.0 3 32.72825517401952 34.0 31.0 34.0 31.0 34.0 4 36.189523443593174 37.0 37.0 37.0 35.0 37.0 5 36.00518803621947 37.0 35.0 37.0 35.0 37.0 6 36.07382348203205 37.0 35.0 37.0 35.0 37.0 7 36.075049680508165 37.0 35.0 37.0 35.0 37.0 8 36.063701729846294 37.0 35.0 37.0 35.0 37.0 9 37.92953163871594 39.0 38.0 39.0 35.0 39.0 10-11 37.80782065477932 39.0 38.0 39.0 35.0 39.0 12-13 37.81469744049447 39.0 38.0 39.0 35.0 39.0 14-15 39.136666800235965 40.0 39.0 41.0 36.0 41.0 16-17 39.11267380906948 40.0 38.5 41.0 36.0 41.0 18-19 39.18705791861009 40.0 39.0 41.0 36.0 41.0 20-21 39.21006054165208 40.0 39.0 41.0 36.0 41.0 22-23 39.17081637049053 40.0 39.0 41.0 36.0 41.0 24-25 39.140910782734395 40.0 39.0 41.0 36.0 41.0 26-27 39.05264448269752 40.0 39.0 41.0 36.0 41.0 28-29 38.99049470209323 40.0 39.0 41.0 35.5 41.0 30-31 38.85731126842368 40.0 38.0 41.0 35.0 41.0 32-33 38.72202012530886 40.0 38.0 41.0 35.0 41.0 34-35 38.68648652380447 40.0 38.0 41.0 35.0 41.0 36-37 38.640573980455834 40.0 38.0 41.0 35.0 41.0 38-39 38.576918680975 40.0 38.0 41.0 35.0 41.0 40-41 38.49419197169451 40.0 38.0 41.0 34.0 41.0 42-43 38.52142114545447 40.0 38.0 41.0 34.0 41.0 44-45 38.466864467442264 40.0 38.0 41.0 34.0 41.0 46-47 38.42256884596269 40.0 38.0 41.0 34.0 41.0 48-49 38.38554446871332 40.0 38.0 41.0 34.0 41.0 50-51 38.33322619923993 40.0 38.0 41.0 34.0 41.0 52-53 38.091717716322634 40.0 37.0 41.0 33.5 41.0 54-55 37.95095564540927 40.0 37.0 41.0 33.0 41.0 56-57 37.866741473509904 40.0 37.0 41.0 33.0 41.0 58-59 37.741393906828606 39.0 36.5 41.0 33.0 41.0 60-61 37.56526285478063 39.0 36.0 41.0 33.0 41.0 62-63 37.3244584447459 39.0 35.5 40.5 32.5 41.0 64-65 37.091776075805704 39.0 35.0 40.0 32.0 41.0 66-67 36.836204120982146 38.0 35.0 40.0 32.0 41.0 68-69 36.60113802185599 37.5 35.0 40.0 31.5 41.0 70-71 36.297825452942185 37.0 35.0 39.5 31.0 41.0 72-73 36.01254154266646 36.5 35.0 39.0 31.0 41.0 74-75 35.56263185017445 36.0 34.0 39.0 31.0 40.0 76-77 33.621693974220605 34.5 32.0 36.5 28.0 39.0 78-79 34.81494283158784 35.0 34.0 37.0 30.5 39.0 80-81 34.78405374336185 35.0 34.0 37.0 31.0 39.0 82-83 34.50973997965995 35.0 34.0 36.5 31.0 39.0 84-85 34.22368792032442 35.0 34.0 36.0 30.0 37.5 86-87 33.98166716946936 35.0 34.0 36.0 30.0 37.0 88-89 33.83832233244392 35.0 34.0 35.0 30.0 37.0 90-91 33.6668049594314 35.0 34.0 35.0 30.0 36.0 92-93 33.62300449542589 35.0 34.0 35.0 30.0 36.0 94-95 33.48583577035712 35.0 33.5 35.0 30.0 36.0 96-97 33.50144903530433 35.0 33.5 35.0 30.0 36.0 98-99 33.59177544791997 35.0 34.0 35.0 30.5 35.0 100-101 32.367773111679085 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 2.0 19 14.0 20 48.0 21 192.0 22 866.0 23 2976.0 24 7891.0 25 17297.0 26 32275.0 27 53166.0 28 80808.0 29 113335.0 30 153526.0 31 203308.0 32 270665.0 33 374553.0 34 551568.0 35 865919.0 36 1561917.0 37 2933170.0 38 3565069.0 39 1563079.0 40 26448.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38549925376233 20.660159795199487 14.15957093232609 23.79477001871209 2 14.37325915644226 21.541093259246928 41.99305072338546 22.092596860925358 3 17.884655810569335 26.728266705747366 30.737999933106074 24.64907755057722 4 12.26687023162246 18.326121497029696 39.648107198955955 29.758901072391886 5 12.849017766032622 38.159876277855844 36.10011068779039 12.890995268321149 6 29.169632269551045 38.75722105788367 19.200666277051752 12.872480395513536 7 25.73763779787098 32.93340638712228 24.098241619428645 17.23071419557809 8 23.66596989811194 37.55600821903599 21.74496331987784 17.033058562974233 9 25.306755628128208 16.905340999995637 21.811443668144708 35.97645970373144 10-11 23.6763349833989 27.15152672131913 29.57005335393317 19.602084941348803 12-13 24.537237194817095 24.74142259150564 29.631688694584852 21.089651519092413 14-15 21.71362710381186 26.116625550734817 27.194064666948027 24.975682678505297 16-17 21.274919996721625 29.180952160901448 27.892909780522217 21.651218061854713 18-19 21.29039818246654 28.475054398520484 29.486062232198268 20.748485186814708 20-21 22.092603051953137 27.70597443970465 29.30622159360134 20.895200914740876 22-23 21.80638872134676 27.588787115743308 29.15972045758729 21.44510370532264 24-25 21.522786028480617 27.746122322315365 29.2513675819438 21.47972406726022 26-27 21.527497858873012 27.893743026280283 29.11546677053376 21.463292344312947 28-29 21.46556529011047 28.009852409236608 29.112662255934257 21.411920044718663 30-31 21.79392211105677 27.856844457065616 28.974112689239433 21.375120742638178 32-33 21.55082980385272 28.032679292332023 28.922250642296387 21.49424026151887 34-35 21.64274468755261 28.05467790027353 28.958483685810325 21.344093726363532 36-37 21.64945417580366 27.978682684991075 28.940117660068125 21.431745479137142 38-39 21.503814753909676 28.077948116171726 28.992795327571404 21.425441802347194 40-41 21.77439775854517 27.938285915541776 28.822414114485156 21.464902211427894 42-43 21.600185848749206 28.088139080798786 28.690796332341108 21.620878738110903 44-45 21.72710095021108 28.17527334155954 28.49322006229683 21.60440564593255 46-47 21.766214255666537 28.126633277324594 28.316369069254577 21.7907833977543 48-49 21.763737835386426 28.228454130929244 28.269653875510876 21.738154158173458 50-51 21.75689464651806 28.314022674852545 28.14499894470371 21.784083733925684 52-53 21.918846117175743 28.209826930051157 28.03939450913021 21.83193244364289 54-55 21.877182197715467 28.116711926396636 28.08444894650226 21.921656929385634 56-57 21.86452815059474 28.200984634224426 28.084396516557092 21.85009069862375 58-59 21.8561269999142 28.276699107417773 28.02870942421622 21.838464468451807 60-61 21.92388964154679 28.23937169492188 28.03282980939308 21.803908854138253 62-63 21.912472956062167 28.232786369091308 28.000810056548325 21.853930618298204 64-65 21.878521337297624 28.20101679251717 28.01306267520677 21.90739919497844 66-67 21.96125851415339 28.224390726188997 27.848356394017436 21.965994365640178 68-69 21.89811206531673 28.230139278470745 27.942013172806192 21.929735483406336 70-71 21.904791764054306 28.004856281352875 28.020799869875752 22.069552084717067 72-73 22.005844300803403 28.01051472487891 27.976763260668356 22.006877713649327 74-75 21.87390094925476 28.11752505810302 27.944739804720207 22.06383418792201 76-77 21.942254152622663 28.061287985053568 27.939908676127974 22.0565491861958 78-79 21.91906738852588 28.07185846711485 27.885377243088357 22.12369690127091 80-81 21.90914185478201 28.09399439174652 27.92304121323861 22.073822540232864 82-83 21.97567293434305 28.000956368679695 27.99868440364052 22.02468629333673 84-85 22.123324504548744 27.9853640624287 27.88882141157708 22.00249002144547 86-87 21.93147993733367 27.98865585660379 27.986292814711188 22.093571391351354 88-89 21.968116652887524 27.950508233189275 27.941122129642604 22.140252984280597 90-91 22.011688847783716 27.943198074751287 28.001851323017814 22.043261754447187 92-93 22.04908924668497 27.863111920145865 28.00569620852763 22.082102624641532 94-95 21.93086033178604 27.88726452885125 28.064631242221644 22.11724389714107 96-97 21.94297042158382 27.895347226635316 28.08857559638011 22.073106755400755 98-99 22.201060428549173 28.450669110328946 28.10562035646147 21.242650104660406 100-101 26.155580745866462 35.42617264297112 28.846905637788815 9.571340973373607 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2490.0 1 2255.0 2 3362.5 3 4953.0 4 6683.5 5 10699.0 6 14255.5 7 17481.0 8 20037.5 9 19851.0 10 17470.5 11 15296.0 12 16600.0 13 21807.0 14 33010.0 15 47506.5 16 58715.5 17 64724.5 18 65979.5 19 63966.5 20 61294.5 21 60327.0 22 63391.0 23 72779.5 24 88772.5 25 110895.5 26 138671.5 27 168423.5 28 198497.5 29 229475.5 30 256744.5 31 281449.0 32 307390.0 33 333519.5 34 358718.0 35 382469.0 36 408249.5 37 431375.0 38 449243.0 39 464111.5 40 478999.0 41 492337.5 42 500532.5 43 509068.0 44 517233.5 45 524495.5 46 527796.0 47 526790.0 48 523463.0 49 513329.5 50 500916.0 51 485328.0 52 460753.0 53 432296.5 54 403347.0 55 371271.0 56 337389.5 57 302550.0 58 266392.0 59 230348.0 60 193098.5 61 156493.0 62 123886.5 63 95960.5 64 72101.0 65 53725.0 66 40152.5 67 30504.0 68 23450.5 69 16933.0 70 11902.0 71 8546.5 72 5987.0 73 3991.5 74 2689.5 75 1846.5 76 1283.0 77 876.0 78 594.5 79 427.5 80 307.0 81 212.5 82 157.5 83 113.0 84 77.5 85 55.0 86 39.5 87 28.0 88 20.0 89 14.0 90 8.5 91 7.0 92 6.0 93 3.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 9.290606453626867E-4 3 0.0023266910075169893 4 5.089636578943414E-4 5 2.8275758771907855E-4 6 4.8472729323270614E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0010300454981195003 14-15 6.947757869668787E-4 16-17 6.059091165408827E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.254792562819327E-5 28-29 2.3461144118289146E-4 30-31 4.051594790767339E-5 32-33 0.001133809931760491 34-35 0.0021742886975659875 36-37 0.0014683503641467887 38-39 8.557821458129578E-4 40-41 3.75388652384769E-5 42-43 5.051150262670337E-5 44-45 7.743116082626536E-4 46-47 2.153298579955572E-5 48-49 0.0 50-51 0.0 52-53 0.0011940017628455878 54-55 0.0041154431328157964 56-57 0.007213651179069919 58-59 0.005216003842517601 60-61 3.263630880736484E-4 62-63 2.358105371749888E-5 64-65 1.3833113879726706E-4 66-67 2.558608425980303E-4 68-69 0.0 70-71 1.337298274127424E-4 72-73 1.504969937473014E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 1.1016511106185508E-5 88-89 3.242359979662577E-4 90-91 1.7038776506798643E-4 92-93 6.06541322880489E-4 94-95 3.9408134521255273E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 232.0 20-21 843.0 22-23 1884.0 24-25 4137.0 26-27 7139.0 28-29 14765.0 30-31 35560.0 32-33 43525.0 34-35 58974.0 36-37 89689.0 38-39 107580.0 40-41 106995.0 42-43 120350.0 44-45 140526.0 46-47 140152.0 48-49 131906.0 50-51 122227.0 52-53 116496.0 54-55 124123.0 56-57 127773.0 58-59 127499.0 60-61 124077.0 62-63 119582.0 64-65 122664.0 66-67 130119.0 68-69 131574.0 70-71 129852.0 72-73 123336.0 74-75 125366.0 76-77 123428.0 78-79 130536.0 80-81 132098.0 82-83 126921.0 84-85 126482.0 86-87 131509.0 88-89 138505.0 90-91 147717.0 92-93 149255.0 94-95 171229.0 96-97 243179.0 98-99 983687.0 100-101 7144603.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.60085505961653 #Duplication Level Percentage of deduplicated Percentage of total 1 89.64848602789014 75.84338572759592 2 7.04552391631978 11.921146953272633 3 1.788334064956882 4.53883773082776 4 0.6857740382175179 2.320682800435527 5 0.3393935839684398 1.4356493702738884 6 0.16706585954716743 0.84803487413761 7 0.10204457416398224 0.6043140759927146 8 0.058947772298196144 0.39896255522295765 9 0.03883668121098831 0.2957054794314619 >10 0.12298738650468374 1.566534496425303 >50 0.002069205404190572 0.11583552191230825 >100 4.7382841718385254E-4 0.05914887449130001 >500 3.15330035920363E-5 0.019993949968652662 >1k 3.1528097250091335E-5 0.031767590011993946 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6157576441090202E-5 2 0.0 8.078788220545101E-6 0.0 0.0 1.6157576441090202E-5 3 0.0 8.078788220545101E-6 0.0 0.0 1.6157576441090202E-5 4 0.0 9.694545864654122E-5 0.0 8.078788220545101E-6 1.6157576441090202E-5 5 0.0 9.694545864654122E-5 0.0 8.078788220545101E-6 1.6157576441090202E-5 6 2.4236364661635306E-5 9.694545864654122E-5 0.0 8.078788220545101E-6 5.6551517543815713E-5 7 2.4236364661635306E-5 9.694545864654122E-5 0.0 2.4236364661635306E-5 5.6551517543815713E-5 8 2.4236364661635306E-5 9.694545864654122E-5 0.0 2.4236364661635306E-5 7.270909398490592E-5 9 2.4236364661635306E-5 1.9389091729308245E-4 0.0 4.039394110272551E-5 9.694545864654122E-5 10-11 2.4236364661635306E-5 1.9389091729308245E-4 0.0 4.847272932327061E-5 9.694545864654122E-5 12-13 2.4236364661635306E-5 1.9389091729308245E-4 0.0 4.847272932327061E-5 1.0502424686708632E-4 14-15 2.4236364661635306E-5 2.6660001127798834E-4 0.0 7.270909398490592E-5 1.3733939974926672E-4 16-17 6.059091165408826E-5 2.6660001127798834E-4 0.0 8.078788220545102E-5 1.7773334085199223E-4 18-19 6.463030576436081E-5 2.8275758771907855E-4 0.0 8.482727631572358E-5 2.1812728195471775E-4 20-21 6.463030576436081E-5 3.1103334649098646E-4 0.0 9.290606453626867E-5 2.221666760649903E-4 22-23 6.463030576436081E-5 3.59506075814257E-4 0.0 9.694545864654122E-5 2.4236364661635304E-4 24-25 6.463030576436081E-5 3.918212286964374E-4 0.0 1.4137879385953928E-4 2.7063940538826086E-4 26-27 6.463030576436081E-5 3.9586062280671E-4 0.0 1.898515231828099E-4 2.8275758771907855E-4 28-29 6.463030576436081E-5 3.9586062280671E-4 0.0 6.947757869668787E-4 2.9487577004989624E-4 30-31 6.463030576436081E-5 4.1201819924780017E-4 0.0 0.0019106334141589165 3.029545582704413E-4 32-33 6.866969987463336E-5 4.1201819924780017E-4 0.0 0.004390821397866263 3.756636522553472E-4 34-35 8.078788220545102E-5 4.887666873429786E-4 0.0 0.00736381546302686 4.0797880513752764E-4 36-37 8.886667042599612E-5 5.695545695484297E-4 0.0 0.01213030051314847 4.1201819924780017E-4 38-39 8.886667042599612E-5 5.816727518792473E-4 0.0 0.018771064430436545 4.322151697991629E-4 40-41 8.886667042599612E-5 6.139879047614278E-4 0.0 0.026009658676044954 4.483727462402531E-4 42-43 1.1310303508763143E-4 6.38224269423063E-4 0.0 0.03246057107015022 4.604909285710708E-4 44-45 1.2118182330817652E-4 7.392091221798768E-4 0.0 0.03963453500999427 4.7260911090188845E-4 46-47 1.2926061152872162E-4 8.240363984956003E-4 0.0 0.047470959583923014 4.887666873429786E-4 48-49 1.2926061152872162E-4 8.240363984956003E-4 0.0 0.054794381105847154 5.089636578943414E-4 50-51 1.6561515852117457E-4 9.209818571421415E-4 0.0 0.06187947837526521 5.089636578943414E-4 52-53 1.7773334085199223E-4 9.290606453626867E-4 0.0 0.06886763018603673 5.533969931073395E-4 54-55 1.7773334085199223E-4 9.290606453626867E-4 0.0 0.07604159412588077 6.0186972243061E-4 56-57 1.7773334085199223E-4 9.290606453626867E-4 0.0 0.08342964595356928 6.139879047614278E-4 58-59 1.7773334085199223E-4 9.371394335832318E-4 0.0 0.09059957049930303 6.220666929819728E-4 60-61 2.0196970551362753E-4 9.654151923551397E-4 0.0 0.09764831322172865 6.341848753127904E-4 62-63 2.1812728195471775E-4 9.89651557016775E-4 0.0 0.10434966805067081 6.624606340846983E-4 64-65 2.1812728195471775E-4 0.001114872774435224 0.0 0.11076422589778362 6.665000281949709E-4 66-67 2.1812728195471775E-4 0.0011189121685454967 0.0 0.1171101140450218 6.866969987463337E-4 68-69 2.1812728195471775E-4 0.0011673848978687672 0.0 0.12394476887960296 7.028545751874239E-4 70-71 2.221666760649903E-4 0.00118758186842013 0.0 0.13024218429751785 7.109333634079689E-4 72-73 2.3428485839580796E-4 0.00118758186842013 0.0 0.13529546632946882 7.513273045106944E-4 74-75 2.3428485839580796E-4 0.0012077788389714926 0.0 0.13940756953372627 7.513273045106944E-4 76-77 2.3428485839580796E-4 0.001223936415412583 0.0 0.14305918180941268 7.513273045106944E-4 78-79 2.3428485839580796E-4 0.0012360545977434005 0.0 0.14669059711454768 7.513273045106944E-4 80-81 2.3428485839580796E-4 0.0012360545977434005 0.0 0.14850832446417034 7.715242750620572E-4 82-83 2.3428485839580796E-4 0.0012360545977434005 0.0 0.14917886388647555 8.159576102750553E-4 84-85 2.3428485839580796E-4 0.0012522121741844908 0.0 0.14984132452056026 8.159576102750553E-4 86-87 2.3428485839580796E-4 0.001276448538846126 0.0 0.15007964877306634 8.199970043853279E-4 88-89 2.4236364661635304E-4 0.001357236421051577 0.0 0.15016043665527182 8.401939749366906E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13760 0.0 44.947464 1 GTATCAA 24530 0.0 35.355896 1 TCAACGC 29100 0.0 29.14579 4 ATCAACG 29300 0.0 28.919312 3 CAACGCA 29730 0.0 28.569853 5 AACGCAG 30785 0.0 27.685656 6 TATCAAC 31395 0.0 27.38664 2 ACGCAGA 35765 0.0 23.80761 7 CGCAGAG 36105 0.0 23.560406 8 GTACATG 33150 0.0 21.050123 1 TACATGG 32810 0.0 20.647936 2 ACATGGG 33135 0.0 19.91876 3 GCAGAGT 44225 0.0 19.272516 9 CATGGGG 23075 0.0 18.161955 4 GAGTACT 25505 0.0 17.840794 12-13 AGAGTAC 38765 0.0 17.781454 10-11 CAGAGTA 42540 0.0 17.111588 10-11 GTGGTAT 7555 0.0 17.098373 1 TGGTATC 7185 0.0 15.83991 2 AGTACTT 28420 0.0 15.6162815 12-13 >>END_MODULE