##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138806_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12066596 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.430737881669366 33.0 31.0 34.0 31.0 34.0 2 32.62454324318142 34.0 31.0 34.0 31.0 34.0 3 32.70626861129684 34.0 31.0 34.0 31.0 34.0 4 36.17176973522607 37.0 35.0 37.0 35.0 37.0 5 35.98466941298109 37.0 35.0 37.0 35.0 37.0 6 36.05223751586612 37.0 35.0 37.0 35.0 37.0 7 36.05289113847849 37.0 35.0 37.0 35.0 37.0 8 36.03942031373222 37.0 35.0 37.0 35.0 37.0 9 37.8990387181273 39.0 38.0 39.0 35.0 39.0 10-11 37.776724645459254 39.0 37.5 39.0 35.0 39.0 12-13 37.78183138807332 39.0 38.0 39.0 35.0 39.0 14-15 39.09750985282014 40.0 38.5 41.0 36.0 41.0 16-17 39.069951790877894 40.0 38.0 41.0 36.0 41.0 18-19 39.14276536647121 40.0 38.5 41.0 36.0 41.0 20-21 39.160902064235756 40.0 39.0 41.0 36.0 41.0 22-23 39.12233472523319 40.0 39.0 41.0 36.0 41.0 24-25 39.09165452061978 40.0 39.0 41.0 36.0 41.0 26-27 39.00013812258466 40.0 39.0 41.0 35.5 41.0 28-29 38.936343294503345 40.0 38.0 41.0 35.0 41.0 30-31 38.804209335964444 40.0 38.0 41.0 35.0 41.0 32-33 38.672629967419994 40.0 38.0 41.0 35.0 41.0 34-35 38.63636910634331 40.0 38.0 41.0 35.0 41.0 36-37 38.59284584162212 40.0 38.0 41.0 35.0 41.0 38-39 38.52694650926125 40.0 38.0 41.0 34.5 41.0 40-41 38.445277795674066 40.0 38.0 41.0 34.0 41.0 42-43 38.46919412820333 40.0 38.0 41.0 34.0 41.0 44-45 38.41614296349269 40.0 38.0 41.0 34.0 41.0 46-47 38.37226599774024 40.0 38.0 41.0 34.0 41.0 48-49 38.33237831944637 40.0 38.0 41.0 34.0 41.0 50-51 38.275798167480986 40.0 38.0 41.0 34.0 41.0 52-53 38.03140125129353 40.0 37.0 41.0 33.0 41.0 54-55 37.88670870520765 40.0 37.0 41.0 33.0 41.0 56-57 37.79554577980251 39.5 37.0 41.0 33.0 41.0 58-59 37.66975463532628 39.0 36.0 41.0 33.0 41.0 60-61 37.48996526259535 39.0 36.0 41.0 33.0 41.0 62-63 37.24641722426987 39.0 35.5 40.0 32.0 41.0 64-65 37.00944307382524 38.5 35.0 40.0 32.0 41.0 66-67 36.74925021067976 38.0 35.0 40.0 32.0 41.0 68-69 36.50961688484924 37.5 35.0 40.0 31.5 41.0 70-71 36.20200033212794 37.0 35.0 39.5 31.0 41.0 72-73 35.90704951791414 36.5 34.5 39.0 31.0 41.0 74-75 35.45669932211037 36.0 34.0 39.0 31.0 40.0 76-77 33.51493633317427 34.5 32.0 36.5 28.0 39.0 78-79 34.710596181243744 35.0 34.0 37.0 30.0 39.0 80-81 34.6819272587078 35.0 34.0 37.0 31.0 39.0 82-83 34.409857516109916 35.0 34.0 36.5 30.5 38.5 84-85 34.1291287394103 35.0 34.0 36.0 30.0 37.0 86-87 33.8972444584753 35.0 34.0 36.0 30.0 37.0 88-89 33.75685881293287 35.0 34.0 35.0 30.0 36.5 90-91 33.589257110050625 35.0 34.0 35.0 30.0 36.0 92-93 33.55357433132189 35.0 34.0 35.0 30.0 36.0 94-95 33.42172215925655 35.0 33.0 35.0 30.0 36.0 96-97 33.44249155911331 35.0 33.0 35.0 30.0 35.5 98-99 33.53849753858033 35.0 33.0 35.0 30.0 35.0 100-101 32.30973903758185 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 8.0 20 43.0 21 224.0 22 930.0 23 2989.0 24 8100.0 25 17876.0 26 33281.0 27 55274.0 28 82795.0 29 116299.0 30 157530.0 31 207402.0 32 275576.0 33 378726.0 34 556492.0 35 868121.0 36 1561785.0 37 2899823.0 38 3410983.0 39 1409715.0 40 22624.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.53707474750957 20.389047582267608 14.07656310031429 23.997314569908532 2 14.504429305316924 21.303486725012455 41.96701731378867 22.225066655881946 3 18.250557999641316 26.446514412518283 30.373669975160606 24.929257612679795 4 12.44134297619459 18.14531303621924 39.13688452442427 30.276459463161903 5 13.070316382116905 38.026260700243355 35.789183451638365 13.11423946600138 6 29.5413828030485 38.295014956241786 19.03472032648315 13.12888191422657 7 26.186515235945578 32.69337102195184 23.59911610532084 17.52099763678174 8 23.894029434647518 37.442962373149804 21.50983591395618 17.153172278246494 9 25.51269637269699 16.975185048045034 21.515678489608835 35.99644008964915 10-11 23.998664246154952 27.01976933094089 29.196642847325315 19.78492357557884 12-13 24.768025464294034 24.551487305995888 29.32338217213501 21.35710505757507 14-15 21.904294573705727 25.906703889849698 26.8750049983448 25.313996538099776 16-17 21.487803195312345 28.9856842233499 27.581765591044523 21.944746990293236 18-19 21.579511736367074 28.297330083811538 29.100398322774705 21.022759857046676 20-21 22.39952701042944 27.52215108151446 28.86006712288215 21.218254785173958 22-23 22.069989781748305 27.470018981489332 28.757588316887723 21.702402919874643 24-25 21.81859466619435 27.604261636044548 28.867257384746285 21.709886313014813 26-27 21.79486031206741 27.749581113675347 28.74991582466452 21.705642749592723 28-29 21.697051503460205 27.84204310917877 28.771845671364087 21.689059715996937 30-31 21.992095313078732 27.698759262227 28.6973807755301 21.611764649164165 32-33 21.76625378394303 27.86418707181478 28.612435475826807 21.75712366841538 34-35 21.825884160189858 27.88922662620013 28.643692633293412 21.641196580316603 36-37 21.868135627986394 27.81759226063183 28.617479204904793 21.69679290647698 38-39 21.708398239614795 27.942973518237164 28.68067458664367 21.667953655504377 40-41 21.968169658392966 27.80937464320548 28.526634642795358 21.6958210556062 42-43 21.86910512828511 27.893564112399034 28.382374835275183 21.854955924040677 44-45 21.91281591202509 27.990348541156802 28.25941647145337 21.837419075364743 46-47 21.988782393570297 27.938884166066686 28.006536531304764 22.065796909058246 48-49 21.942851202029043 28.022510370279115 28.012373384982748 22.022265042709098 50-51 21.90572090455808 28.124684409132456 27.896798392861992 22.072796293447475 52-53 22.11524576732552 28.057588497883767 27.770851339760487 22.05631439503023 54-55 22.08957732900261 27.968247229236066 27.800212223614412 22.141963218146913 56-57 22.083745128787687 28.064066618051903 27.785832466748083 22.066355786412327 58-59 22.03850159747974 28.131251310901728 27.810904281525616 22.01934281009292 60-61 22.14248379115365 28.11173129831765 27.723766762936158 22.02201814759254 62-63 22.11644238111698 28.125661534041726 27.685495476232397 22.0724006086089 64-65 22.074130821117226 28.094702055699162 27.69932540756025 22.131841715623363 66-67 22.17903344203335 28.105326538628773 27.556368415945993 22.159271603391883 68-69 22.10924047270959 28.095882928308814 27.666348448400097 22.1285281505815 70-71 22.10901653673899 27.884873342737738 27.71466864709742 22.291441473425852 72-73 22.17824454459652 27.90665477349347 27.687823541077115 22.22727714083289 74-75 22.046451694572426 28.048749003489686 27.61217390507746 22.292625396860426 76-77 22.11961358905843 28.00263170277609 27.61223927270493 22.26551543546055 78-79 22.12805082822201 28.006654033883986 27.532711255758148 22.332583882135857 80-81 22.09540984406093 28.040823735306247 27.560871464505976 22.302894956126845 82-83 22.167958356975625 27.97797263496603 27.67421871925977 22.179850288798576 84-85 22.271173560370226 27.945865176933232 27.555625163502185 22.227336099194357 86-87 22.11520253191191 27.990513206562962 27.62371205532976 22.270572206195364 88-89 22.149217549512368 27.977685743126557 27.618320403370124 22.254776303990955 90-91 22.18824301162125 27.99798129079214 27.616472592987023 22.197303104599584 92-93 22.173055096379812 27.989298850412315 27.605592760564573 22.232053292643297 94-95 22.062575774275324 28.01549868458254 27.63523162368997 22.286693917452162 96-97 22.05180921756774 28.03487259553225 27.71479879275408 22.19851939414593 98-99 22.33939137529225 28.601259319854016 27.74119665168594 21.318152653167793 100-101 26.38319072227443 35.686124086724405 28.301134640315173 9.629550550685993 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3486.0 1 2975.5 2 3572.0 3 5020.5 4 6838.5 5 10667.5 6 13772.0 7 15990.5 8 17421.5 9 17057.0 10 15621.5 11 14246.5 12 15281.5 13 19709.0 14 29909.0 15 43531.5 16 54249.0 17 60042.0 18 61174.5 19 59334.0 20 56456.5 21 54281.5 22 55462.0 23 62819.5 24 77192.5 25 97848.0 26 123628.5 27 151009.5 28 177545.5 29 203808.5 30 228420.0 31 252517.0 32 277862.5 33 303117.0 34 329306.0 35 355722.0 36 384576.5 37 410255.0 38 429331.5 39 445439.0 40 462895.5 41 479573.0 42 490909.5 43 502513.0 44 513111.5 45 520465.5 46 524150.5 47 525466.0 48 526233.5 49 520438.5 50 507506.0 51 489768.0 52 466062.0 53 438375.5 54 408059.0 55 376009.0 56 343462.5 57 309144.0 58 274436.5 59 238904.5 60 200444.5 61 162478.5 62 128120.0 63 99242.5 64 74716.0 65 55532.5 66 41769.0 67 31495.5 68 23475.0 69 16707.0 70 11624.0 71 8133.5 72 5450.5 73 3640.0 74 2523.0 75 1780.5 76 1247.5 77 851.0 78 594.0 79 432.0 80 310.0 81 214.5 82 163.5 83 118.0 84 78.0 85 56.5 86 44.5 87 34.5 88 26.0 89 19.0 90 12.0 91 7.5 92 5.5 93 4.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0011933771545844412 3 0.0023204555783586356 4 4.392290916178846E-4 5 3.977923848614804E-4 6 5.138151637794123E-4 7 0.0 8 0.0 9 0.0 10-11 1.2431012026921263E-5 12-13 0.0010897853876934308 14-15 8.411651471550054E-4 16-17 1.1187910824229137E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.293129623108772E-5 28-29 2.3236711215314854E-4 30-31 4.5716795506986585E-5 32-33 0.0013215563347781516 34-35 0.002272549783279106 36-37 0.001392976637046344 38-39 8.315401833944903E-4 40-41 6.849593919683974E-5 42-43 6.480547362583557E-5 44-45 7.68547507655017E-4 46-47 1.7681111604414125E-5 48-49 0.0 50-51 0.0 52-53 0.0011294137615546 54-55 0.004126194650021299 56-57 0.006705733130793713 58-59 0.004973850407004694 60-61 2.487866031476194E-4 62-63 3.8718026774483466E-5 64-65 1.419399173224454E-4 66-67 2.4764147497441743E-4 68-69 0.0 70-71 1.6760901023374906E-4 72-73 1.5428756661815695E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 5.5518564769595454E-6 86-87 3.375521349272395E-5 88-89 3.080998421501809E-4 90-91 1.1006494700807269E-4 92-93 5.827965865074113E-4 94-95 3.47422347810742E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 221.0 20-21 829.0 22-23 1835.0 24-25 4176.0 26-27 6823.0 28-29 13809.0 30-31 35523.0 32-33 43658.0 34-35 58022.0 36-37 89425.0 38-39 106768.0 40-41 104894.0 42-43 117226.0 44-45 136849.0 46-47 137026.0 48-49 128775.0 50-51 117963.0 52-53 112392.0 54-55 119725.0 56-57 124283.0 58-59 124388.0 60-61 121952.0 62-63 115409.0 64-65 118266.0 66-67 124909.0 68-69 125867.0 70-71 124028.0 72-73 116561.0 74-75 117790.0 76-77 115803.0 78-79 123110.0 80-81 124400.0 82-83 118793.0 84-85 117600.0 86-87 122332.0 88-89 130100.0 90-91 137078.0 92-93 141613.0 94-95 164475.0 96-97 239421.0 98-99 976442.0 100-101 7006037.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.76280314215369 #Duplication Level Percentage of deduplicated Percentage of total 1 89.97609649202886 77.16602250945296 2 7.083422219540142 12.14988290774357 3 1.6623398958790239 4.2770078773686295 4 0.6053567445884225 2.0766836526764756 5 0.27381725243180105 1.1741667558616977 6 0.14437547056589975 0.7429227036419438 7 0.08475020904403917 0.5087890846150214 8 0.045050693812822507 0.309093902790923 9 0.030394555317399555 0.23460500378514945 >10 0.09236681106060622 1.173922178451965 >50 0.0015998807549239367 0.09026468286431147 >100 3.701617378355075E-4 0.053809687578263835 >500 4.471238987255841E-5 0.025755794502742284 >1k 1.4900848341076999E-5 0.017073258666303034 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.3149365405123366E-5 2 0.0 4.143670675640421E-5 0.0 0.0 4.143670675640421E-5 3 0.0 4.143670675640421E-5 0.0 0.0 4.143670675640421E-5 4 0.0 8.287341351280842E-5 0.0 8.287341351280841E-6 4.143670675640421E-5 5 0.0 8.287341351280842E-5 0.0 8.287341351280841E-6 4.143670675640421E-5 6 0.0 8.287341351280842E-5 0.0 8.287341351280841E-6 5.8011389458965895E-5 7 0.0 8.287341351280842E-5 0.0 8.287341351280841E-6 6.629873081024673E-5 8 0.0 9.94480962153701E-5 0.0 8.287341351280841E-6 6.629873081024673E-5 9 0.0 1.8232150972817852E-4 0.0 2.4862024053842526E-5 8.287341351280842E-5 10-11 0.0 1.8232150972817852E-4 0.0 2.4862024053842526E-5 9.530442553972968E-5 12-13 0.0 1.8232150972817852E-4 0.0 2.4862024053842526E-5 1.0359176689101053E-4 14-15 0.0 2.4862024053842524E-4 0.0 2.4862024053842526E-5 1.408848029717743E-4 16-17 0.0 2.569075818897061E-4 0.0 4.143670675640421E-5 1.7403416837689768E-4 18-19 0.0 2.6933859391662735E-4 0.0 4.972404810768505E-5 1.8232150972817852E-4 20-21 0.0 2.8591327661918903E-4 0.0 6.629873081024673E-5 2.1132720445766147E-4 22-23 0.0 3.14918971348672E-4 0.0 8.287341351280842E-5 2.403328991871444E-4 24-25 0.0 3.190626420243124E-4 0.0 1.0773543756665095E-4 2.569075818897061E-4 26-27 0.0 3.232063126999528E-4 0.0 1.8646518040381894E-4 2.817696059435486E-4 28-29 0.0 3.232063126999528E-4 0.0 6.754183201293886E-4 2.9005694729482945E-4 30-31 0.0 3.4392466607815493E-4 0.0 0.0023991853211958038 2.9005694729482945E-4 32-33 0.0 3.4806833675379536E-4 0.0 0.006368821828459327 3.522120074294358E-4 34-35 0.0 4.1851073823968247E-4 0.0 0.011204485506931698 3.729303608076379E-4 36-37 0.0 4.889531397255696E-4 0.0 0.017569163664715386 3.8950504351019957E-4 38-39 0.0 4.889531397255696E-4 0.0 0.02715761760814732 4.185107382396825E-4 40-41 0.0 5.303898464819739E-4 0.0 0.03684137597711898 4.2265440891532294E-4 42-43 0.0 5.469645291845355E-4 0.0 0.04534418820353313 4.350854209422442E-4 44-45 0.0 6.132632599947823E-4 0.0 0.05465087254102151 4.516601036448059E-4 46-47 0.0 6.629873081024673E-4 0.0 0.06413573471756244 4.7652212769864837E-4 48-49 0.0 6.629873081024673E-4 0.0 0.07297004059802781 5.22102505130693E-4 50-51 0.0 7.375733802639949E-4 0.0 0.08178362812511498 5.386771878332547E-4 52-53 0.0 7.375733802639949E-4 0.0 0.09029058402220477 5.676828825627376E-4 54-55 0.0 7.375733802639949E-4 0.0 0.09863179309226894 6.00832247967861E-4 56-57 0.0 7.458607216152758E-4 0.0 0.10669123255638956 6.215506013460631E-4 58-59 0.0 7.500043922909162E-4 0.0 0.11379348409443724 6.546999667511865E-4 60-61 0.0 7.707227456691183E-4 0.0 0.12106976980086182 6.671309787781078E-4 62-63 0.0 7.914410990473204E-4 0.0 0.12816787766823384 6.79561990805029E-4 64-65 0.0 8.784581832357693E-4 0.0 0.13444968241250474 6.79561990805029E-4 66-67 0.0 9.116075486408926E-4 0.0 0.14097182005596276 6.878493321563099E-4 68-69 0.0 9.281822313434543E-4 0.0 0.14760169313698746 6.919930028319503E-4 70-71 0.0 9.364695726947352E-4 0.0 0.15414454913382364 7.375733802639949E-4 72-73 0.0 9.364695726947352E-4 0.0 0.1593448558317524 7.790100870203991E-4 74-75 0.0 9.530442553972968E-4 0.0 0.16389046256292994 7.8729742837168E-4 76-77 0.0 9.903372914780604E-4 0.0 0.1678145186927614 7.955847697229608E-4 78-79 0.0 0.0010027683035049818 0.0 0.17149824192340574 7.955847697229608E-4 80-81 0.0 0.0010027683035049818 0.0 0.17298167602528502 8.121594524255225E-4 82-83 0.0 0.0010027683035049818 0.0 0.1735659335905503 8.494524885062863E-4 84-85 0.0 0.0010110556448562626 0.0 0.1741501911558156 8.535961591819267E-4 86-87 0.0 0.0010110556448562626 0.0 0.17438638038432713 8.577398298575672E-4 88-89 0.0 0.0010359176689101052 0.0 0.174456822785813 8.701708418844884E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13325 0.0 46.274773 1 GTATCAA 24170 0.0 35.344685 1 TCAACGC 28515 0.0 29.126858 4 ATCAACG 28580 0.0 29.090652 3 CAACGCA 29010 0.0 28.557901 5 AACGCAG 29875 0.0 27.884476 6 TATCAAC 30370 0.0 27.609213 2 ACGCAGA 35285 0.0 23.50317 7 CGCAGAG 35720 0.0 23.193684 8 GTACATG 38285 0.0 21.065634 1 TACATGG 37085 0.0 20.962986 2 ACATGGG 37400 0.0 20.208296 3 GCAGAGT 43475 0.0 18.970814 9 AGAGTAC 38000 0.0 17.680412 10-11 CATGGGG 24855 0.0 17.652426 4 GAGTACT 22660 0.0 17.382477 12-13 CAGAGTA 41795 0.0 17.15365 10-11 GTGGTAT 7275 0.0 17.13428 1 TGGTATC 6855 0.0 16.062607 2 GTACTTT 26145 0.0 15.113466 14-15 >>END_MODULE