##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138802_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10021773 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44277344936869 33.0 31.0 34.0 31.0 34.0 2 32.63079626728724 34.0 31.0 34.0 31.0 34.0 3 32.71249209097033 34.0 31.0 34.0 31.0 34.0 4 36.17422625717026 37.0 35.0 37.0 35.0 37.0 5 35.99382045472393 37.0 35.0 37.0 35.0 37.0 6 36.05720893897716 37.0 35.0 37.0 35.0 37.0 7 36.058723042319954 37.0 35.0 37.0 35.0 37.0 8 36.042275653220244 37.0 35.0 37.0 35.0 37.0 9 37.90403284927727 39.0 38.0 39.0 35.0 39.0 10-11 37.780187547652496 39.0 37.5 39.0 35.0 39.0 12-13 37.786920587804175 39.0 38.0 39.0 35.0 39.0 14-15 39.11022211339251 40.0 38.5 41.0 36.0 41.0 16-17 39.08144337334322 40.0 38.0 41.0 36.0 41.0 18-19 39.14967960260125 40.0 38.5 41.0 36.0 41.0 20-21 39.168946623871975 40.0 39.0 41.0 36.0 41.0 22-23 39.12839500570204 40.0 39.0 41.0 36.0 41.0 24-25 39.10023253205868 40.0 39.0 41.0 36.0 41.0 26-27 39.01124080736898 40.0 39.0 41.0 36.0 41.0 28-29 38.94755552412235 40.0 38.0 41.0 35.0 41.0 30-31 38.81328922458826 40.0 38.0 41.0 35.0 41.0 32-33 38.68462711981946 40.0 38.0 41.0 35.0 41.0 34-35 38.64117914004683 40.0 38.0 41.0 35.0 41.0 36-37 38.588894957356274 40.0 38.0 41.0 35.0 41.0 38-39 38.51608080384882 40.0 38.0 41.0 34.5 41.0 40-41 38.44268986102537 40.0 38.0 41.0 34.0 41.0 42-43 38.461984518014056 40.0 38.0 41.0 34.0 41.0 44-45 38.40320274377962 40.0 38.0 41.0 34.0 41.0 46-47 38.356756598816304 40.0 38.0 41.0 34.0 41.0 48-49 38.315687241253606 40.0 38.0 41.0 34.0 41.0 50-51 38.24309729181587 40.0 38.0 41.0 34.0 41.0 52-53 37.9984672384246 40.0 37.0 41.0 33.0 41.0 54-55 37.85445690175962 40.0 37.0 41.0 33.0 41.0 56-57 37.75910270305886 39.0 37.0 41.0 33.0 41.0 58-59 37.632011596475294 39.0 36.0 41.0 33.0 41.0 60-61 37.45275896738365 39.0 36.0 41.0 32.5 41.0 62-63 37.20708976365151 39.0 35.5 40.0 32.0 41.0 64-65 36.97435361925969 38.5 35.0 40.0 32.0 41.0 66-67 36.7139953557398 38.0 35.0 40.0 31.5 41.0 68-69 36.47933381179372 37.5 35.0 40.0 31.0 41.0 70-71 36.17248288833375 37.0 35.0 39.5 31.0 41.0 72-73 35.88239432484552 36.5 34.5 39.0 31.0 41.0 74-75 35.43344935723958 36.0 34.0 39.0 30.5 40.0 76-77 33.500909178121475 34.5 32.0 36.5 27.5 39.0 78-79 34.690191615529336 35.0 34.0 37.0 30.0 39.0 80-81 34.663479192544685 35.0 34.0 37.0 31.0 39.0 82-83 34.394241481505006 35.0 34.0 36.0 30.0 38.5 84-85 34.11368994513649 35.0 34.0 36.0 30.0 37.0 86-87 33.88215138723231 35.0 34.0 36.0 30.0 37.0 88-89 33.74667904566587 35.0 34.0 35.0 30.0 36.5 90-91 33.57867716271598 35.0 33.5 35.0 30.0 36.0 92-93 33.539562300079155 35.0 33.5 35.0 30.0 36.0 94-95 33.41131035660349 35.0 33.0 35.0 30.0 36.0 96-97 33.430900562814976 35.0 33.0 35.0 30.0 35.5 98-99 33.52981995211418 35.0 33.0 35.0 30.0 35.0 100-101 32.25924593430164 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 5.0 20 45.0 21 164.0 22 789.0 23 2644.0 24 7125.0 25 15366.0 26 28521.0 27 47560.0 28 70587.0 29 99772.0 30 133847.0 31 176045.0 32 232893.0 33 319086.0 34 471412.0 35 735215.0 36 1327884.0 37 2436596.0 38 2799366.0 39 1099199.0 40 17650.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.423578442656805 20.339225404526722 13.955953702004626 24.281242450811845 2 14.466000981673988 21.074029973286855 42.03390716724789 22.426061877791266 3 18.206982105184803 26.103725147836236 30.39501227453365 25.294280472445312 4 12.395371223423156 18.15687513776299 38.946326790923855 30.501426847890002 5 13.084687814098494 37.895396776027944 35.91864364431036 13.101271765563197 6 29.83325917774003 38.29001026869537 18.870082294248665 13.00664825931594 7 26.4568754450934 32.408447088154965 23.340859945640357 17.793817521111286 8 23.94578284700721 37.55629867090384 21.350603331366617 17.14731515072233 9 25.248705992442655 16.982553885425265 21.311967453264007 36.456772668868076 10-11 23.956514481020474 26.915881052185075 29.25322195982687 19.87438250696758 12-13 24.78648661499169 24.283357323825545 29.29209413373219 21.63806192745058 14-15 21.875108202710937 25.81180097306854 26.634236370499654 25.678854453720874 16-17 21.680409756206593 29.013050995812712 27.30139125207898 22.00514799590172 18-19 21.71712530307761 28.272128095497674 28.799714381876342 21.21103221954838 20-21 22.373149711734168 27.50209325389995 28.658664055475246 21.466092978890643 22-23 22.067516889850502 27.571284454930776 28.514036446490614 21.847162208728104 24-25 21.919018143802145 27.637243333441795 28.66305117470883 21.780687348047227 26-27 21.936268397945522 27.79476064392878 28.51849483297691 21.750476125148786 28-29 21.794066767473772 27.79466221876541 28.61245861938224 21.79881239437858 30-31 22.103039618267072 27.77373964421328 28.424740909309865 21.698479828209777 32-33 22.08963645186358 27.741178041000364 28.4337306744439 21.73545483269216 34-35 21.995883529581135 27.741422116888725 28.4917639907731 21.770930362757042 36-37 21.906874317759367 27.86943260821718 28.429069509166705 21.794623564856742 38-39 21.794727116026017 27.77899521429632 28.600950488769545 21.825327180908122 40-41 22.063995303548158 27.636570032866963 28.468704664486467 21.830729999098413 42-43 22.00256751734886 27.700692663919785 28.347827002665337 21.948912816066017 44-45 22.007106899429967 27.87265310391171 28.18752397794701 21.932716018711314 46-47 22.15649460224353 27.762011112565254 27.90241924335478 22.179075041836434 48-49 22.088440792210935 27.819360623589773 27.91786631494998 22.174332269249312 50-51 21.98319707300459 27.94162990399117 27.928732979400507 22.146440043603736 52-53 22.17456173372758 27.87684736293945 27.86783012343978 22.08076077989319 54-55 22.122929126053016 27.78407127589764 27.8351486337449 22.257850964304442 56-57 22.199969512179972 27.99560913554663 27.64936091798263 22.155060434290768 58-59 22.09807725309246 28.079890813522717 27.82482742676475 21.997204506620076 60-61 22.241125713826563 28.11833415329703 27.61698438497789 22.02355574789852 62-63 22.150916470712943 28.21224666118794 27.558053783455083 22.07878308464403 64-65 22.16034417979527 28.115396974816132 27.56708261452092 22.157176230867677 66-67 22.242328352400918 28.079666179855334 27.46333040702826 22.214675060715493 68-69 22.165680710548592 28.03183864114891 27.586955906659156 22.215524741643343 70-71 22.20564203366953 27.804588675987585 27.627196755744194 22.362572534598698 72-73 22.23118817002942 27.86027936939429 27.597928930366983 22.31060353020931 74-75 22.1760754355586 27.96098619020375 27.527773061768414 22.335165312469236 76-77 22.221368093982765 27.94766915869368 27.516424125754195 22.31453862156935 78-79 22.207674489498977 27.945692963179653 27.49765909881805 22.348973448503322 80-81 22.21242894721263 27.961091896936964 27.522237466490907 22.304241689359504 82-83 22.252880605736213 27.934986930620585 27.61304514751043 22.199087316132772 84-85 22.367085486359446 27.873864559294926 27.51020787294086 22.248842081404764 86-87 22.192502021733336 27.921624072078753 27.589233297417604 22.296640608770304 88-89 22.218836723904 27.899219259262402 27.560186522083473 22.32175749475012 90-91 22.289607638746805 27.932008196986114 27.53323699110737 22.245147173159715 92-93 22.265218662796578 27.89992292618132 27.58640057067423 22.24845784034787 94-95 22.14721019876392 27.94770854998135 27.62012633140842 22.28495491984631 96-97 22.173737121167182 27.944527261051057 27.657904549200897 22.223831068580868 98-99 22.409634443012642 28.54859760768261 27.69445915680602 21.34730879249873 100-101 23.21180548569558 31.124964622910404 24.742225088157696 20.921004803236315 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2035.0 1 1782.0 2 2285.0 3 3259.0 4 4465.5 5 7278.0 6 9686.5 7 11380.5 8 12451.0 9 12070.5 10 10890.5 11 9924.0 12 10812.5 13 14204.5 14 21781.5 15 31637.5 16 39477.0 17 44127.0 18 45493.0 19 44002.5 20 41776.5 21 40647.5 22 41950.5 23 47942.5 24 58862.0 25 73604.0 26 92607.5 27 114177.5 28 137606.5 29 162139.0 30 183774.0 31 203686.5 32 225435.5 33 247097.5 34 267642.5 35 288653.5 36 310404.5 37 329873.5 38 345857.5 39 359011.0 40 371923.0 41 385422.5 42 394838.5 43 403593.5 44 413781.0 45 423292.0 46 433112.0 47 439672.0 48 437564.5 49 429089.5 50 420298.5 51 408215.5 52 388683.0 53 365968.0 54 341091.5 55 312645.5 56 284355.0 57 255970.5 58 226648.0 59 196214.5 60 163983.5 61 133380.5 62 105648.5 63 81502.5 64 61239.5 65 45651.5 66 34454.5 67 26273.0 68 19841.5 69 14530.0 70 10645.5 71 7601.5 72 5228.5 73 3618.0 74 2527.5 75 1684.0 76 1120.0 77 725.0 78 496.5 79 371.0 80 281.5 81 200.0 82 136.5 83 95.0 84 68.5 85 52.5 86 39.0 87 27.0 88 16.0 89 11.0 90 9.5 91 8.5 92 7.5 93 5.5 94 3.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0011574798191896784 3 0.0021054158780088113 4 3.193047777074975E-4 5 3.5921787492093464E-4 6 5.188702637746835E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 9.429469216674535E-4 14-15 7.383922984485878E-4 16-17 8.980446873023366E-5 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 6.989171327403886E-5 28-29 2.1979697353554522E-4 30-31 5.002158681579035E-5 32-33 0.0011683564544222643 34-35 0.001961718521761595 36-37 0.0015056815224885663 38-39 7.577488978821986E-4 40-41 4.610389081492161E-5 42-43 3.097249451490027E-5 44-45 6.927059160783137E-4 46-47 2.631138854774712E-5 48-49 0.0 50-51 0.0 52-53 0.0010939714429044661 54-55 0.003814942287247009 56-57 0.006630467955351389 58-59 0.004624724266854289 60-61 2.8757383317199126E-4 62-63 2.2796356048078427E-5 64-65 1.3247768874125116E-4 66-67 1.4563540874470724E-4 68-69 0.0 70-71 9.539114123934317E-5 72-73 3.0145511782463715E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.274591312993886E-5 88-89 3.11860044112935E-4 90-91 1.6825760966913218E-4 92-93 6.149468993352423E-4 94-95 3.959563272674908E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 184.0 20-21 624.0 22-23 1473.0 24-25 3024.0 26-27 5125.0 28-29 10213.0 30-31 23223.0 32-33 28985.0 34-35 39366.0 36-37 59717.0 38-39 71637.0 40-41 72813.0 42-43 82192.0 44-45 96885.0 46-47 96964.0 48-49 91496.0 50-51 85119.0 52-53 82419.0 54-55 90558.0 56-57 93462.0 58-59 94946.0 60-61 94767.0 62-63 92126.0 64-65 95678.0 66-67 102598.0 68-69 95871.0 70-71 94392.0 72-73 91447.0 74-75 91676.0 76-77 89981.0 78-79 96365.0 80-81 97977.0 82-83 95163.0 84-85 94728.0 86-87 97468.0 88-89 104829.0 90-91 110396.0 92-93 115903.0 94-95 136315.0 96-97 201849.0 98-99 836071.0 100-101 6055748.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.46880299689937 #Duplication Level Percentage of deduplicated Percentage of total 1 89.78833065854822 76.74101144475918 2 7.143513077559878 12.210950238634792 3 1.7616837861631844 4.51707013387239 4 0.6207155848900135 2.1220727216827893 5 0.2918753400547972 1.2473117969398237 6 0.1364738639131774 0.6998554673412609 7 0.07661890266504057 0.45839681284018713 8 0.04806133731538215 0.328619597662074 9 0.032461022226016434 0.24969642423420335 >10 0.09840476287871058 1.2477729617304312 >50 0.0014575116679521791 0.08448702981080172 >100 3.495009740402203E-4 0.05255394756390228 >500 3.64342147055065E-5 0.02279439649238551 >1k 1.821692891612135E-5 0.017407026435718738 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9956548606718593E-5 0.0 9.978274303359296E-6 0.0 3 0.0 1.9956548606718593E-5 0.0 9.978274303359296E-6 0.0 4 0.0 7.982619442687437E-5 0.0 1.9956548606718593E-5 0.0 5 0.0 7.982619442687437E-5 0.0 1.9956548606718593E-5 0.0 6 0.0 7.982619442687437E-5 0.0 1.9956548606718593E-5 0.0 7 0.0 7.982619442687437E-5 0.0 1.9956548606718593E-5 9.978274303359296E-6 8 0.0 9.978274303359296E-5 0.0 1.9956548606718593E-5 9.978274303359296E-6 9 0.0 1.9956548606718592E-4 0.0 1.0976101733695225E-4 9.978274303359296E-6 10-11 0.0 1.9956548606718592E-4 0.0 1.2971756594367084E-4 1.4967411455038946E-5 12-13 0.0 1.9956548606718592E-4 0.0 1.3969584024703014E-4 1.9956548606718593E-5 14-15 0.0 2.8438081764573994E-4 0.0 1.6963066315710804E-4 5.488050866847613E-5 16-17 0.0 2.943590919490992E-4 0.0 1.9956548606718592E-4 5.9869645820155775E-5 18-19 0.0 3.1930477770749743E-4 0.0 2.3448944612894346E-4 6.984792012351507E-5 20-21 0.0 3.492396006175753E-4 0.0 2.594351318873417E-4 6.984792012351507E-5 22-23 0.0 3.891526978310125E-4 0.0 2.8936995479741955E-4 7.982619442687436E-5 24-25 0.0 4.140983835894108E-4 0.0 3.442504634658957E-4 9.978274303359296E-5 26-27 0.0 4.290657950444497E-4 0.0 4.6897889225788693E-4 9.978274303359296E-5 28-29 0.0 4.4403320649948866E-4 0.0 0.001347067030953505 9.978274303359296E-5 30-31 0.0 5.288485380780427E-4 0.0 0.004764625979854064 9.978274303359296E-5 32-33 0.0 5.38826812381402E-4 0.0 0.012507766839260878 1.0976101733695225E-4 34-35 4.989137151679648E-6 5.887181838981985E-4 0.0 0.019891689823746755 1.0976101733695225E-4 36-37 9.978274303359296E-6 6.38609555414995E-4 0.0 0.030708139168588233 1.0976101733695225E-4 38-39 9.978274303359296E-6 6.38609555414995E-4 0.0 0.04729702019792306 1.1973929164031154E-4 40-41 2.494568575839824E-5 6.785226526284321E-4 0.0 0.061995018246771304 1.2971756594367084E-4 42-43 2.9934822910077888E-5 6.984792012351506E-4 0.0 0.07323055511235388 1.2971756594367084E-4 44-45 2.9934822910077888E-5 7.93272807117064E-4 0.0 0.08567346316864291 1.347067030953505E-4 46-47 2.9934822910077888E-5 8.681098643922588E-4 0.0 0.09798665365898829 1.5965238885374872E-4 48-49 2.9934822910077888E-5 8.681098643922588E-4 0.0 0.10833911324872356 1.8958721176382662E-4 50-51 2.9934822910077888E-5 9.479360588191331E-4 0.0 0.11791326744279679 1.8958721176382662E-4 52-53 2.9934822910077888E-5 9.479360588191331E-4 0.0 0.12660933349817444 2.2451117182558414E-4 54-55 2.9934822910077888E-5 9.529251959708128E-4 0.0 0.13537524747367558 2.69413406190701E-4 56-57 2.9934822910077888E-5 9.579143331224924E-4 0.0 0.14379691098571082 2.793916804940603E-4 58-59 2.9934822910077888E-5 9.579143331224924E-4 0.0 0.15180447611415665 2.793916804940603E-4 60-61 2.9934822910077888E-5 9.77870881729211E-4 0.0 0.15997169363145625 2.8438081764573994E-4 62-63 2.9934822910077888E-5 9.978274303359296E-4 0.0 0.16744043194752067 2.8936995479741955E-4 64-65 2.9934822910077888E-5 0.0011275449962796003 0.0 0.17491914853788845 2.943590919490992E-4 66-67 2.9934822910077888E-5 0.0011674580934930377 0.0 0.18200871243042524 3.043373662524585E-4 68-69 2.9934822910077888E-5 0.0012023820535547953 0.0 0.1897418750155287 3.0932650340413816E-4 70-71 2.9934822910077888E-5 0.0012223386021615137 0.0 0.19599326386658328 3.0932650340413816E-4 72-73 2.9934822910077888E-5 0.0012273277393131934 0.0 0.20051342212600504 3.6919614922429397E-4 74-75 2.9934822910077888E-5 0.0012472842879199119 0.0 0.2043201337727366 3.6919614922429397E-4 76-77 2.9934822910077888E-5 0.0013071539337400678 0.0 0.20813682369377157 3.6919614922429397E-4 78-79 2.9934822910077888E-5 0.0013370887566501457 0.0 0.2114346433510318 3.6919614922429397E-4 80-81 2.9934822910077888E-5 0.0013370887566501457 0.0 0.21306609119963105 3.6919614922429397E-4 82-83 2.9934822910077888E-5 0.0013370887566501457 0.0 0.21367975506928763 3.6919614922429397E-4 84-85 2.9934822910077888E-5 0.0013620344424085439 0.0 0.21414873396154555 3.6919614922429397E-4 86-87 2.9934822910077888E-5 0.0014069366767736607 0.0 0.21438821254482615 3.6919614922429397E-4 88-89 2.9934822910077888E-5 0.001446849773987098 0.0 0.2144231365048879 3.7917442352765324E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10645 0.0 42.230755 1 GTATCAA 17745 0.0 34.92907 1 TCAACGC 20555 0.0 29.187088 4 ATCAACG 20780 0.0 28.9123 3 CAACGCA 20995 0.0 28.6559 5 AACGCAG 21835 0.0 27.670145 6 TATCAAC 22295 0.0 27.213219 2 ACGCAGA 25135 0.0 23.953377 7 CGCAGAG 25330 0.0 23.752293 8 CTTATAC 8655 0.0 22.45555 1 GTACATG 24730 0.0 21.424284 1 TACATGG 24675 0.0 20.770004 2 ACATGGG 25015 0.0 19.896349 3 GCAGAGT 31395 0.0 19.056364 9 TATACAC 13060 0.0 18.892885 3 GAGTACT 17860 0.0 18.180061 12-13 TATACCG 815 0.0 18.143888 5 AGAGTAC 27365 0.0 17.771214 10-11 CAGAGTA 30430 0.0 16.932344 10-11 CATGGGG 18010 0.0 16.538471 4 >>END_MODULE