##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138799_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10579599 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.426278065926695 33.0 31.0 34.0 31.0 34.0 2 32.62838667136628 34.0 31.0 34.0 31.0 34.0 3 32.712565570774466 34.0 31.0 34.0 31.0 34.0 4 36.179241859734006 37.0 35.0 37.0 35.0 37.0 5 35.989235319788584 37.0 35.0 37.0 35.0 37.0 6 36.05312980198966 37.0 35.0 37.0 35.0 37.0 7 36.05529113154478 37.0 35.0 37.0 35.0 37.0 8 36.04176897441954 37.0 35.0 37.0 35.0 37.0 9 37.910973657886274 39.0 38.0 39.0 35.0 39.0 10-11 37.78691040180256 39.0 37.5 39.0 35.0 39.0 12-13 37.79580714732194 39.0 38.0 39.0 35.0 39.0 14-15 39.11716152946818 40.0 38.5 41.0 36.0 41.0 16-17 39.09356049317181 40.0 38.0 41.0 36.0 41.0 18-19 39.16413438732413 40.0 39.0 41.0 36.0 41.0 20-21 39.18184529364284 40.0 39.0 41.0 36.0 41.0 22-23 39.14504909832755 40.0 39.0 41.0 36.0 41.0 24-25 39.117063803434235 40.0 39.0 41.0 36.0 41.0 26-27 39.03037843595713 40.0 39.0 41.0 36.0 41.0 28-29 38.966751832122654 40.0 38.5 41.0 35.0 41.0 30-31 38.836381533799056 40.0 38.0 41.0 35.0 41.0 32-33 38.706418519773415 40.0 38.0 41.0 35.0 41.0 34-35 38.66946899572969 40.0 38.0 41.0 35.0 41.0 36-37 38.6264381154876 40.0 38.0 41.0 35.0 41.0 38-39 38.56124819998777 40.0 38.0 41.0 35.0 41.0 40-41 38.48021894664953 40.0 38.0 41.0 34.0 41.0 42-43 38.50418638751924 40.0 38.0 41.0 34.0 41.0 44-45 38.44979475252342 40.0 38.0 41.0 34.0 41.0 46-47 38.40828823576639 40.0 38.0 41.0 34.0 41.0 48-49 38.36972368580057 40.0 38.0 41.0 34.0 41.0 50-51 38.31691706267628 40.0 38.0 41.0 34.0 41.0 52-53 38.071657492863935 40.0 37.0 41.0 33.0 41.0 54-55 37.92983861614812 40.0 37.0 41.0 33.0 41.0 56-57 37.84345186139258 40.0 37.0 41.0 33.0 41.0 58-59 37.71785860584117 39.0 36.5 41.0 33.0 41.0 60-61 37.54353043813696 39.0 36.0 41.0 33.0 41.0 62-63 37.30098470661367 39.0 35.5 40.5 32.5 41.0 64-65 37.067312584560106 39.0 35.0 40.0 32.0 41.0 66-67 36.81257612900567 38.0 35.0 40.0 32.0 41.0 68-69 36.57865087434384 37.5 35.0 40.0 31.5 41.0 70-71 36.27153915179734 37.0 35.0 39.5 31.0 41.0 72-73 35.983342991620816 36.5 35.0 39.0 31.0 41.0 74-75 35.53160754515412 36.0 34.0 39.0 31.0 40.0 76-77 33.59681778503954 34.5 32.0 36.5 28.0 39.0 78-79 34.77704923306058 35.0 34.0 37.0 30.0 39.0 80-81 34.744364822590526 35.0 34.0 37.0 31.0 39.0 82-83 34.47060032485074 35.0 34.0 36.5 30.5 39.0 84-85 34.18401500286646 35.0 34.0 36.0 30.0 37.0 86-87 33.94686925153842 35.0 34.0 36.0 30.0 37.0 88-89 33.80542466045418 35.0 34.0 35.0 30.0 37.0 90-91 33.63450777399388 35.0 34.0 35.0 30.0 36.0 92-93 33.59352316938601 35.0 34.0 35.0 30.0 36.0 94-95 33.460854817071734 35.0 33.0 35.0 30.0 36.0 96-97 33.47881028079796 35.0 33.0 35.0 30.0 35.5 98-99 33.57074118227952 35.0 33.5 35.0 30.0 35.0 100-101 32.35597349106965 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 15.0 20 44.0 21 170.0 22 733.0 23 2565.0 24 6928.0 25 15352.0 26 28143.0 27 46482.0 28 70555.0 29 99219.0 30 133858.0 31 177601.0 32 236052.0 33 325257.0 34 478183.0 35 747109.0 36 1346276.0 37 2507388.0 38 3041504.0 39 1296126.0 40 20036.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.235296347243406 20.707448363591098 14.180216093256465 23.877039195909035 2 14.40248064887816 21.360972976958248 42.235391309032856 22.00115506513074 3 18.07920087551461 26.554254890977525 30.521000383954522 24.845543849553348 4 12.362621574329914 18.249316416145284 39.49275280125707 29.895309208267733 5 12.981183445409439 38.08994262241546 35.99247492832174 12.93639900385337 6 29.42898159979145 38.613584277749325 19.12913342093627 12.828300701522958 7 26.052745477404198 32.747866908755235 23.8987413417087 17.300646272131864 8 23.67667243342588 37.833381019450734 21.60687753855321 16.883069008570175 9 25.38044211316516 17.05795276361609 21.71079452066189 35.85081060255686 10-11 23.858249441129548 27.158885093796332 29.429136653909882 19.55372881116424 12-13 24.623837107498304 24.63788314987699 29.561961502406657 21.176318240218045 14-15 21.77456066059708 26.05025558815523 27.058651999334565 25.11653175191313 16-17 21.414153835625584 29.133152629954417 27.74462929049813 21.708064243921868 18-19 21.472784554499654 28.491467398717095 29.23941162609282 20.796336420690427 20-21 22.21475639049359 27.74861550490826 29.02131216900009 21.015315935598057 22-23 21.927412840532952 27.6324992638339 28.898615156939268 21.541472738693884 24-25 21.670221383661474 27.729118509765566 29.00615974976179 21.59450035681117 26-27 21.68848372489656 27.89315927293508 28.8613577847951 21.556999217373264 28-29 21.593841161230458 28.06987439992474 28.854981346345433 21.481303092499374 30-31 21.927624743388726 27.854697044423933 28.734121192467864 21.48355701971948 32-33 21.69334173291286 28.036363150652306 28.697257253347953 21.573037863086885 34-35 21.814160345352263 28.058015600311748 28.71508023297567 21.41274382136032 36-37 21.823730747044152 27.981986335959945 28.689367302875862 21.504915614120033 38-39 21.65751657689103 28.11415685607223 28.724735243586437 21.503591323450305 40-41 21.927731798482483 27.95165968568471 28.592344288907455 21.528264226925348 42-43 21.77480056228278 28.052477431255085 28.44006363672712 21.73265836973501 44-45 21.87954260843104 28.183608561925265 28.297508249304858 21.639340580338835 46-47 21.904180761053656 28.122890115771238 28.100309263650026 21.872619859525077 48-49 21.872708271101406 28.21400607030912 28.081497847555315 21.831787811034157 50-51 21.868880219377377 28.290924286092782 27.982878129113768 21.85731736541607 52-53 22.016922336465406 28.192759123601974 27.873767000040537 21.916551539892076 54-55 22.003784276690645 28.1196674298736 27.924565938967742 21.951982354468004 56-57 22.005934393429623 28.183716030802756 27.90124145301018 21.90910812275744 58-59 21.96632969711859 28.281175889442224 27.889360330660136 21.863134082779055 60-61 22.08645458755192 28.227790117764023 27.853864795622975 21.831890499061082 62-63 22.050320598019983 28.257811157037654 27.78462099530175 21.907247249640612 64-65 22.009129378122147 28.197050696820476 27.821269896207625 21.972550028849753 66-67 22.077528981758263 28.20490860224795 27.672434526216467 22.045127889777316 68-69 21.984552984028248 28.231677891657803 27.77076860755224 22.01300051676171 70-71 22.02328066364226 28.00818795903043 27.806582176329087 22.161949200998222 72-73 22.081588102138365 28.045521458366114 27.772816543073482 22.100073896422042 74-75 21.974679242177192 28.177086849587525 27.735021770427092 22.11321213780819 76-77 22.01481643030619 28.149839532110203 27.718138518554692 22.117205519028918 78-79 22.027287964086007 28.130018423314336 27.674642496793005 22.168051115806655 80-81 22.0112164526838 28.172803378038996 27.690661394222353 22.12531877505485 82-83 22.065903790031097 28.085360175255154 27.793609194134895 22.055126840578858 84-85 22.196614131734346 28.113593730573093 27.671326374144062 22.018465763548495 86-87 22.030733289206506 28.129577811339228 27.754677048645664 22.085011850808602 88-89 22.06156720056353 28.08282599826458 27.70490871869173 22.15069808248016 90-91 22.08666573968692 28.102955758108994 27.738535195057267 22.071843307146814 92-93 22.11605003956822 28.10556822001003 27.692410525897586 22.085971214524168 94-95 21.99478126865729 28.124813234974805 27.778136366626153 22.102269129741746 96-97 21.979340569068416 28.106253245519337 27.82050802684423 22.093898158568017 98-99 22.23316645878275 28.711077053034913 27.873551972021293 21.18220451616104 100-101 26.244414147193574 35.75262356427885 28.450707648916897 9.552254639610684 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2446.0 1 2173.5 2 2908.0 3 4159.0 4 5737.5 5 9277.5 6 12206.0 7 14188.5 8 15296.0 9 14653.0 10 12956.0 11 11500.5 12 12362.5 13 16257.5 14 25197.0 15 36773.5 16 45671.5 17 50907.0 18 52574.5 19 51122.5 20 48732.0 21 47441.5 22 49309.0 23 55993.0 24 68408.0 25 86907.5 26 110147.5 27 134761.0 28 160641.5 29 187618.5 30 211703.5 31 233860.0 32 257038.0 33 279849.5 34 302427.5 35 324370.5 36 347018.0 37 367871.5 38 384192.5 39 399371.0 40 412986.5 41 424728.5 42 433478.5 43 442202.0 44 450799.0 45 456404.5 46 459353.5 47 459152.0 48 455108.5 49 446382.0 50 435012.0 51 418520.0 52 396296.0 53 373369.0 54 349200.0 55 320679.5 56 290902.5 57 259987.0 58 228150.5 59 196481.0 60 163603.0 61 132716.0 62 105026.5 63 80718.0 64 60341.5 65 45025.0 66 33758.0 67 25427.0 68 19115.0 69 13632.0 70 9542.0 71 6693.0 72 4638.0 73 3203.0 74 2217.0 75 1507.5 76 1034.0 77 722.5 78 484.0 79 336.5 80 252.0 81 183.0 82 130.0 83 87.5 84 60.5 85 41.5 86 30.5 87 24.0 88 17.0 89 11.5 90 7.0 91 5.0 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010302847962384964 3 0.002088926054758786 4 5.954857079176631E-4 5 3.024689310057971E-4 6 4.2534693422690217E-4 7 0.0 8 0.0 9 0.0 10-11 4.72607704696558E-6 12-13 0.0010066544110036684 14-15 7.467201734205615E-4 16-17 1.3705623436200182E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.512459521481547E-5 28-29 1.7509361474757676E-4 30-31 2.3697761779576784E-5 32-33 0.0012073497176394031 34-35 0.0018318512273474779 36-37 0.001261203370242314 38-39 6.9106650118443E-4 40-41 2.4373229010713545E-5 42-43 3.442586606134847E-5 44-45 6.559052491202671E-4 46-47 0.0 48-49 0.0 50-51 0.0 52-53 9.251637149959371E-4 54-55 0.0033822680291954858 56-57 0.006516626000158693 58-59 0.0046262594870558225 60-61 2.3376393919419396E-4 62-63 2.7495062849039514E-5 64-65 8.89737104928921E-5 66-67 1.800682661305434E-4 68-69 1.1394964747397561E-5 70-71 1.67355314549796E-4 72-73 1.75331562211817E-5 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 2.563029049243093E-5 88-89 3.575363560843684E-4 90-91 1.6506022354304147E-4 92-93 5.838559795073261E-4 94-95 3.551724550100661E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 166.0 20-21 665.0 22-23 1553.0 24-25 3395.0 26-27 5656.0 28-29 11678.0 30-31 29483.0 32-33 35220.0 34-35 48208.0 36-37 74559.0 38-39 89866.0 40-41 88974.0 42-43 99429.0 44-45 116861.0 46-47 116932.0 48-49 110088.0 50-51 102525.0 52-53 98459.0 54-55 104597.0 56-57 108578.0 58-59 108331.0 60-61 106418.0 62-63 101088.0 64-65 104310.0 66-67 109133.0 68-69 111435.0 70-71 110260.0 72-73 105319.0 74-75 105781.0 76-77 104274.0 78-79 110347.0 80-81 111941.0 82-83 107380.0 84-85 106194.0 86-87 110259.0 88-89 117045.0 90-91 122085.0 92-93 125924.0 94-95 145983.0 96-97 212044.0 98-99 851435.0 100-101 6145721.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.90822790563392 #Duplication Level Percentage of deduplicated Percentage of total 1 89.66305803883897 76.13131366677821 2 7.1317583778886915 12.110899314353741 3 1.7740113910951836 4.518844905069016 4 0.6766596475531933 2.2981588627596983 5 0.3089451634194058 1.3115993172979112 6 0.14977715379858478 0.7630387625872451 7 0.08787399254664935 0.5222857490290215 8 0.050466837612114256 0.34280397997168116 9 0.039118054292771806 0.29893002022040666 >10 0.11547561638752477 1.4823775157374393 >50 0.0023876802419946245 0.13667738241565774 >100 4.141544481741683E-4 0.05396832030289496 >500 5.389187677294037E-5 0.02910220347712199 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.45215409393116E-6 9.45215409393116E-6 2 0.0 3.780861637572464E-5 0.0 1.890430818786232E-5 9.45215409393116E-6 3 0.0 4.72607704696558E-5 0.0 1.890430818786232E-5 9.45215409393116E-6 4 0.0 1.0397369503324275E-4 0.0 5.6712924563586954E-5 9.45215409393116E-6 5 0.0 1.0397369503324275E-4 0.0 5.6712924563586954E-5 9.45215409393116E-6 6 0.0 1.0397369503324275E-4 0.0 5.6712924563586954E-5 3.780861637572464E-5 7 0.0 1.0397369503324275E-4 0.0 5.6712924563586954E-5 3.780861637572464E-5 8 0.0 1.2287800322110506E-4 0.0 5.6712924563586954E-5 4.72607704696558E-5 9 0.0 1.890430818786232E-4 0.0 7.561723275144928E-5 8.506938684538043E-5 10-11 0.0 1.890430818786232E-4 0.0 7.561723275144928E-5 8.506938684538043E-5 12-13 0.0 1.9376915892558877E-4 0.0 9.924761798627718E-5 8.506938684538043E-5 14-15 0.0 2.552081605361413E-4 0.0 1.0397369503324275E-4 1.1815192617413948E-4 16-17 0.0 2.646603146300725E-4 0.0 1.4650838845593298E-4 1.3705623436200182E-4 18-19 0.0 2.788385457709692E-4 0.0 1.7013877369076086E-4 1.5123446550289855E-4 20-21 0.0 3.213732391936594E-4 0.0 1.8431700483165762E-4 1.606866195968297E-4 22-23 0.0 3.733600867102808E-4 0.0 1.9849523597255435E-4 1.9376915892558877E-4 24-25 0.0 4.15894780132971E-4 0.0 2.2685169825434782E-4 2.079473900664855E-4 26-27 0.0 4.442512424147645E-4 0.0 2.835646228179348E-4 2.079473900664855E-4 28-29 0.0 4.4897731946173005E-4 0.0 7.41994096373596E-4 2.079473900664855E-4 30-31 0.0 5.482249374480073E-4 0.0 0.0023015995218722374 2.1267346711345108E-4 32-33 0.0 5.671292456358696E-4 0.0 0.005822526921861594 2.457560064422101E-4 34-35 0.0 6.711029406691123E-4 0.0 0.009797157718359647 2.552081605361413E-4 36-37 9.45215409393116E-6 7.750766357023551E-4 0.0 0.015416463327201722 2.552081605361413E-4 38-39 9.45215409393116E-6 8.223374061720109E-4 0.0 0.024471626949187773 2.6466031463007243E-4 40-41 9.45215409393116E-6 9.641197175809783E-4 0.0 0.034339675823251904 2.7411246872400364E-4 42-43 9.45215409393116E-6 9.924761798627718E-4 0.0 0.04259613242430077 2.835646228179348E-4 44-45 9.45215409393116E-6 0.0011200802601308423 0.0 0.05108416680065095 2.9774285395883153E-4 46-47 9.45215409393116E-6 0.0012193278781171195 0.0 0.06030001704223383 3.1664716214669384E-4 48-49 9.45215409393116E-6 0.0012193278781171195 0.0 0.0693788110494547 3.497297014754529E-4 50-51 9.45215409393116E-6 0.001441453499324502 0.0 0.07820712297318641 3.497297014754529E-4 52-53 9.45215409393116E-6 0.0014650838845593297 0.0 0.08617528887437038 3.8753831785117755E-4 54-55 9.45215409393116E-6 0.0014887142697941576 0.0 0.09433249785743297 4.3007301127386774E-4 56-57 9.45215409393116E-6 0.0015028925009350543 0.0 0.10246607645526074 4.442512424147645E-4 58-59 9.45215409393116E-6 0.0015028925009350543 0.0 0.10955991810275606 4.5370339650869563E-4 60-61 9.45215409393116E-6 0.0015312489632168477 0.0 0.11628985181763506 4.678816276495924E-4 62-63 9.45215409393116E-6 0.0015690575795925725 0.0 0.12257553429009926 4.915120128844202E-4 64-65 9.45215409393116E-6 0.0017581006614711956 0.0 0.12918259000175716 4.915120128844202E-4 66-67 1.4178231140896738E-5 0.0017628267385181612 0.0 0.1358936194084483 4.915120128844202E-4 68-69 1.890430818786232E-5 0.0018384439712696105 0.0 0.14299218713299058 4.915120128844202E-4 70-71 1.890430818786232E-5 0.0018620743565044384 0.0 0.14946691268733342 4.915120128844202E-4 72-73 1.890430818786232E-5 0.001880978664692301 0.0 0.154467102203023 5.482249374480073E-4 74-75 1.890430818786232E-5 0.00191406120402106 0.0 0.1584937198470377 5.482249374480073E-4 76-77 1.890430818786232E-5 0.0019849523597255435 0.0 0.1624730767205827 5.529510144949728E-4 78-79 1.890430818786232E-5 0.001994404513819475 0.0 0.16620195151063855 5.576770915419384E-4 80-81 1.890430818786232E-5 0.0020038566679134056 0.0 0.1680356694048612 5.671292456358696E-4 82-83 1.890430818786232E-5 0.002013308822007337 0.0 0.16879656780942265 6.143900161055254E-4 84-85 1.890430818786232E-5 0.002070021746570924 0.0 0.1695621922910311 6.19116093152491E-4 86-87 1.890430818786232E-5 0.0020983782088527174 0.0 0.16983630475975509 6.238421701994565E-4 88-89 1.890430818786232E-5 0.002268516982543478 0.0 0.16994027845478832 6.238421701994565E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11190 0.0 43.847218 1 GTATCAA 20045 0.0 34.911472 1 TCAACGC 23455 0.0 28.913483 4 ATCAACG 23610 0.0 28.706192 3 CAACGCA 24005 0.0 28.233301 5 AACGCAG 24980 0.0 27.231705 6 TATCAAC 25610 0.0 26.93562 2 ACGCAGA 29085 0.0 23.345499 7 CGCAGAG 29325 0.0 23.111897 8 GTACATG 28520 0.0 19.157372 1 GCAGAGT 35655 0.0 18.927101 9 TACATGG 28195 0.0 18.83254 2 ACATGGG 28345 0.0 18.013823 3 AGAGTAC 31580 0.0 17.570839 10-11 GAGTACT 19830 0.0 17.497885 12-13 CAGAGTA 34335 0.0 16.772537 10-11 AGTACTT 21895 0.0 15.705165 12-13 CATGGGG 20050 0.0 15.532786 4 GTACTTT 23170 0.0 15.03834 14-15 GTGGTAT 6395 0.0 14.434527 1 >>END_MODULE