##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138798_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9361189 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.32921640616379 33.0 31.0 34.0 31.0 34.0 2 32.49680163492052 34.0 31.0 34.0 31.0 34.0 3 32.615033090347815 34.0 31.0 34.0 31.0 34.0 4 36.14069014096393 37.0 35.0 37.0 35.0 37.0 5 35.9733347975348 37.0 35.0 37.0 35.0 37.0 6 36.01777103314547 37.0 35.0 37.0 35.0 37.0 7 35.98921654076208 37.0 35.0 37.0 35.0 37.0 8 35.97544510638552 37.0 35.0 37.0 35.0 37.0 9 37.81022100931837 39.0 38.0 39.0 35.0 39.0 10-11 37.68721868557509 39.0 37.0 39.0 35.0 39.0 12-13 37.70642212223255 39.0 37.0 39.0 35.0 39.0 14-15 39.02040451271735 40.0 38.0 41.0 36.0 41.0 16-17 38.97015582101804 40.0 38.0 41.0 36.0 41.0 18-19 39.024593670739904 40.0 38.5 41.0 36.0 41.0 20-21 39.017176890562894 40.0 39.0 41.0 36.0 41.0 22-23 38.97957327173401 40.0 38.5 41.0 36.0 41.0 24-25 38.95998545124861 40.0 38.0 41.0 35.0 41.0 26-27 38.86083597778989 40.0 38.0 41.0 35.0 41.0 28-29 38.7809952893232 40.0 38.0 41.0 35.0 41.0 30-31 38.639103267637104 40.0 38.0 41.0 35.0 41.0 32-33 38.55067093881913 40.0 38.0 41.0 34.5 41.0 34-35 38.502438901929764 40.0 38.0 41.0 34.0 41.0 36-37 38.40288823425074 40.0 38.0 41.0 34.0 41.0 38-39 38.3603744984745 40.0 38.0 41.0 34.0 41.0 40-41 38.35536221160329 40.0 38.0 41.0 34.0 41.0 42-43 38.3133432184209 40.0 38.0 41.0 34.0 41.0 44-45 38.19579955470911 40.0 38.0 41.0 33.5 41.0 46-47 38.125188034687355 40.0 37.5 41.0 33.0 41.0 48-49 38.09002051192641 40.0 37.0 41.0 33.0 41.0 50-51 37.990446289644154 40.0 37.0 41.0 33.0 41.0 52-53 37.83913394683212 40.0 37.0 41.0 33.0 41.0 54-55 37.63712042818841 39.0 36.0 41.0 33.0 41.0 56-57 37.48249945951708 39.0 36.0 41.0 33.0 41.0 58-59 37.23171279677754 39.0 35.5 40.0 32.0 41.0 60-61 37.03311633848994 39.0 35.0 40.0 32.0 41.0 62-63 36.78739956065125 38.0 35.0 40.0 31.0 41.0 64-65 36.43884221284738 38.0 35.0 40.0 31.0 41.0 66-67 36.34626155367174 37.0 35.0 40.0 31.0 41.0 68-69 36.09450415031769 37.0 35.0 39.5 31.0 41.0 70-71 35.77075229671395 36.0 34.0 39.0 31.0 41.0 72-73 35.455028930411615 36.0 34.0 39.0 31.0 40.0 74-75 35.05728970563433 35.0 34.0 38.0 30.0 40.0 76-77 33.05068587653851 34.0 31.0 35.5 27.5 38.5 78-79 34.25596099895236 35.0 33.5 37.0 29.5 39.0 80-81 34.294807901143464 35.0 34.0 36.0 30.0 39.0 82-83 34.042568532097576 35.0 34.0 36.0 30.0 37.0 84-85 33.82256657950411 35.0 33.5 35.5 30.0 37.0 86-87 33.64999074870208 35.0 33.0 35.0 30.0 37.0 88-89 33.446471005870684 35.0 33.0 35.0 29.0 36.0 90-91 33.308274211099935 35.0 33.0 35.0 29.0 36.0 92-93 33.267311351941295 35.0 33.0 35.0 29.0 36.0 94-95 33.26224647449748 35.0 33.0 35.0 29.0 35.5 96-97 33.31069486108849 35.0 33.0 35.0 30.0 35.0 98-99 33.350331477730634 35.0 33.0 35.0 30.0 35.0 100-101 32.086440578632335 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 11.0 20 53.0 21 196.0 22 840.0 23 2982.0 24 7691.0 25 16595.0 26 31147.0 27 50745.0 28 75501.0 29 104167.0 30 138981.0 31 181593.0 32 239359.0 33 327035.0 34 481732.0 35 748241.0 36 1334400.0 37 2303479.0 38 2378412.0 39 925692.0 40 12337.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.861669495189126 20.11461364576658 13.780781479788518 24.242935379255776 2 14.965260247420451 20.851019779833788 41.30337475239687 22.88034522034889 3 18.588289686432827 25.90944692466252 29.997786604771363 25.50447678413329 4 13.069456484408759 17.576791827103087 37.76642593859645 31.587325749891708 5 13.629184086115604 37.554063673996794 35.19554791359725 13.621204326290352 6 30.81894831949232 37.11112979344824 18.3642804348892 13.70564145217023 7 27.023639838913628 32.150702223830756 22.930270930327335 17.89538700692829 8 24.70121990366781 36.924751438098035 20.843776762873873 17.53025189536028 9 25.855289870949004 16.7019595707081 20.92331706366599 36.5194334946769 10-11 24.89692410185912 26.36413159039863 28.359797843958745 20.37914646378351 12-13 25.474066338014502 23.784479354516137 28.664081126240344 22.07737318122902 14-15 22.597461850063162 25.122381629213 25.98340477814329 26.296751742580547 16-17 22.42471776137498 28.296679495945952 26.65158053950486 22.627022203174207 18-19 22.536433274471506 27.554086748707174 28.1214826514817 21.78799732533962 20-21 23.150664685437704 26.764068010229618 27.92240218616747 22.1628651181652 22-23 23.021501721452893 26.708884743933247 27.80573637430413 22.463877160309732 24-25 22.762380252934868 26.87595676095042 27.851613823629517 22.510049162485192 26-27 22.63853298555106 26.981292849272602 27.855267138065347 22.524907027110995 28-29 22.59027185606575 26.995915044043272 27.876603944368423 22.537209155522557 30-31 22.83780563346422 26.855938594615125 27.660493356433253 22.6457624154874 32-33 22.717218483332587 27.059305727364535 27.716858511143194 22.506617278159677 34-35 22.798037613487853 27.14622258519525 27.678344690396578 22.377395110920315 36-37 22.793872027223852 27.00936732086674 27.581095556707165 22.615665095202246 38-39 22.680576818097215 27.07574747268488 27.733712135586412 22.509963573631495 40-41 22.80924738613518 26.872251103483187 27.67578331096417 22.642718199417473 42-43 22.730183636598337 26.984895543915066 27.495731084884568 22.789189734602033 44-45 22.70859708127688 27.129648798189592 27.40581712223296 22.75593699830056 46-47 22.98017700474048 27.06299669464397 27.114168697474 22.84265760314155 48-49 22.850043518869263 27.167578008657507 27.031776003608744 22.95060246886449 50-51 22.78346096738566 27.277156796056147 27.062526788522444 22.87685544803575 52-53 22.96758947696216 27.164089290970857 26.9784825097184 22.889838722348582 54-55 22.903316700060213 27.047019136388435 26.956608647288384 23.09305551626297 56-57 22.987840910714 27.206634070385014 26.90703862288981 22.898486396011172 58-59 22.888602281569366 27.305121132509168 26.93256974248171 22.873706843439752 60-61 23.013115007563798 27.31507970868554 26.84187550403082 22.82992977971984 62-63 22.95124299046342 27.43932501165966 26.760555329603292 22.848876668273633 64-65 22.991254427637934 27.311862302677536 26.7485756505011 22.948307619183435 66-67 23.03511880667998 27.236254785565084 26.693687902918274 23.03493850483666 68-69 22.92605277731864 27.240694075659555 26.791381014487243 23.041872132534564 70-71 22.990591817324894 27.069234195300456 26.8114758564218 23.128698130952845 72-73 23.03818497761903 27.072085349139126 26.75849050031284 23.131239172929007 74-75 22.81547193762294 27.24541347948185 26.83405871212995 23.10505587076526 76-77 23.08213738876027 27.152454580079997 26.681374144591878 23.084033886567855 78-79 22.932528022506972 27.164043700471098 26.71249388529918 23.190934391722752 80-81 22.979768016413775 27.257002003864866 26.693076639484246 23.070153340237113 82-83 22.98474260096286 27.12389828095213 26.837150492801452 23.054208625283557 84-85 23.036266208233506 27.191585986552973 26.704464468962723 23.067683336250795 86-87 22.90715365066535 27.171432906919634 26.837850300371525 23.08356314204349 88-89 22.972247549139883 27.08361109536348 26.76342756739319 23.18071378810344 90-91 23.004926396419197 27.107269808312278 26.77792198610482 23.109881809163706 92-93 22.987690180597287 27.127357460470147 26.8028470736495 23.082105285283067 94-95 22.895119044893022 27.114343357657017 26.84206223247073 23.148475364979227 96-97 22.973544065519352 27.144484734102864 26.775202926461215 23.106768273916565 98-99 23.14074205145508 27.771633804304642 26.84802218625732 22.239601957982956 100-101 27.61476719219355 34.634735507938494 27.402116077663923 10.348381222204036 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2255.0 1 1996.5 2 2621.0 3 3678.0 4 4989.5 5 7959.0 6 10392.5 7 12173.5 8 13220.0 9 12688.0 10 11175.0 11 9675.0 12 10178.0 13 13201.5 14 20372.0 15 30028.5 16 37379.0 17 41194.0 18 42067.0 19 40451.0 20 37846.5 21 35858.0 22 36237.0 23 40720.0 24 49329.5 25 61795.5 26 76761.5 27 92580.5 28 110631.0 29 130638.5 30 148753.5 31 165773.0 32 183570.0 33 201510.5 34 217591.5 35 233326.0 36 252489.5 37 272621.5 38 290842.5 39 304839.5 40 317348.5 41 331763.5 42 344121.0 43 356649.5 44 371640.5 45 387320.5 46 400452.5 47 411082.5 48 422091.0 49 425636.5 50 423581.5 51 421659.0 52 413151.0 53 398719.0 54 381786.5 55 359889.5 56 334258.5 57 304458.5 58 272954.5 59 240144.0 60 203664.0 61 168502.5 62 136437.0 63 107536.0 64 81424.0 65 60481.0 66 46144.0 67 35607.5 68 26954.0 69 19417.0 70 13774.5 71 9869.5 72 6880.5 73 4675.0 74 3132.5 75 2135.0 76 1495.5 77 1020.5 78 684.0 79 479.0 80 349.0 81 256.0 82 195.0 83 138.0 84 90.5 85 60.0 86 43.5 87 37.5 88 29.0 89 23.0 90 19.0 91 12.5 92 9.0 93 5.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004732304838626803 3 5.3412018494659176E-5 4 4.272961479572734E-5 5 5.3412018494659176E-5 6 0.0 7 0.0 8 4.272961479572734E-4 9 6.409442219359101E-5 10-11 4.8070816645193254E-5 12-13 2.7240129432276177E-4 14-15 5.341201849465917E-6 16-17 5.341201849465917E-4 18-19 5.341201849465917E-6 20-21 4.2731114303006657E-5 22-23 0.0 24-25 0.0 26-27 1.0156141589870199E-4 28-29 2.1398402737626052E-5 30-31 6.966626003006582E-5 32-33 4.570201084546354E-4 34-35 0.0 36-37 3.963758218350409E-4 38-39 0.001259445774863335 40-41 0.0 42-43 0.0 44-45 3.4982891391269026E-4 46-47 0.0 48-49 5.783238105570814E-6 50-51 1.1117681595918616E-4 52-53 5.205836405171194E-4 54-55 0.0034509825312101596 56-57 0.003697750587509628 58-59 0.004478847219475278 60-61 9.989001550901068E-4 62-63 0.0 64-65 6.739202097544864E-4 66-67 0.0 68-69 0.0 70-71 6.612069923697374E-6 72-73 1.5407409074682594E-4 74-75 4.070332634366768E-5 76-77 0.0 78-79 0.0 80-81 5.57625987121522E-4 82-83 0.0 84-85 0.0 86-87 7.358980410320558E-6 88-89 0.0 90-91 0.0011770420008073749 92-93 1.7000562873181673E-4 94-95 7.868941210353323E-6 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 198.0 20-21 684.0 22-23 1574.0 24-25 3653.0 26-27 6012.0 28-29 11863.0 30-31 29724.0 32-33 35182.0 34-35 47015.0 36-37 72457.0 38-39 86473.0 40-41 84941.0 42-43 93715.0 44-45 108288.0 46-47 107624.0 48-49 102779.0 50-51 94452.0 52-53 90545.0 54-55 97218.0 56-57 100794.0 58-59 101605.0 60-61 100307.0 62-63 95769.0 64-65 97674.0 66-67 103173.0 68-69 100384.0 70-71 99504.0 72-73 93917.0 74-75 94641.0 76-77 91946.0 78-79 98594.0 80-81 99444.0 82-83 95950.0 84-85 94477.0 86-87 98437.0 88-89 105765.0 90-91 116183.0 92-93 113324.0 94-95 127906.0 96-97 194363.0 98-99 766225.0 100-101 5296410.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.26659954271624 #Duplication Level Percentage of deduplicated Percentage of total 1 88.67632836939208 72.95099994883185 2 7.357704622983249 12.105866795451098 3 2.0460143602578014 5.0495593210192595 4 0.8076515996940468 2.657710028882572 5 0.4084086990558591 1.6799197447495033 6 0.22061932560946823 1.0889761026778946 7 0.13476957249413593 0.7760924115642702 8 0.08860760063527676 0.5831556798322594 9 0.061295169757079424 0.45382906658776173 >10 0.19433464744048487 2.369541274152394 >50 0.0034716737433918093 0.1928907349777031 >100 7.943589371324542E-4 0.09145889127355414 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.20472110967955E-5 0.0 0.0 0.0 3 0.0 4.272961479572734E-5 0.0 0.0 0.0 4 0.0 1.0682403698931834E-4 0.0 0.0 0.0 5 1.0682403698931835E-5 1.3887124808611385E-4 0.0 0.0 0.0 6 2.136480739786367E-5 1.3887124808611385E-4 0.0 0.0 0.0 7 2.136480739786367E-5 1.3887124808611385E-4 0.0 0.0 0.0 8 3.20472110967955E-5 1.7091845918290935E-4 0.0 0.0 1.0682403698931835E-5 9 4.272961479572734E-5 2.1364807397863668E-4 0.0 0.0 1.0682403698931835E-5 10-11 5.341201849465917E-5 2.2433047767756852E-4 0.0 0.0 1.0682403698931835E-5 12-13 6.4094422193591E-5 2.5103648692489813E-4 0.0 0.0 1.0682403698931835E-5 14-15 7.477682589252283E-5 4.005901387099438E-4 0.0 1.0682403698931835E-5 4.272961479572734E-5 16-17 1.0148283513985243E-4 4.379785516562052E-4 0.0 1.6023605548397754E-5 5.8753220344125085E-5 18-19 1.1750644068825018E-4 4.967317720003302E-4 0.0 2.136480739786367E-5 7.477682589252285E-5 20-21 1.1750644068825018E-4 5.661673960433872E-4 0.0 3.20472110967955E-5 7.477682589252285E-5 22-23 1.1750644068825018E-4 6.142382126885805E-4 0.0 3.7388412946261416E-5 8.545922959145468E-5 24-25 1.816008628818412E-4 7.15721047828433E-4 0.0 6.943562404305692E-5 9.614163329038651E-5 26-27 1.9762446843023894E-4 7.584506626241602E-4 0.0 1.602360554839775E-4 9.614163329038651E-5 28-29 2.0296567027970486E-4 7.637918644736261E-4 0.0 6.623090293337737E-4 1.0148283513985242E-4 30-31 2.189892758281026E-4 8.545922959145467E-4 0.0 0.0021578455471842305 1.228476425377161E-4 32-33 2.2433047767756852E-4 8.545922959145467E-4 0.0 0.005335860647616451 1.28188844387182E-4 34-35 2.456952850754322E-4 9.881223421511947E-4 0.0 0.009331079631016957 1.28188844387182E-4 36-37 2.6706009247329585E-4 0.0011109699846889108 0.0 0.01568176863003193 1.28188844387182E-4 38-39 2.6706009247329585E-4 0.0011590408013341042 0.0 0.02488465941666171 1.28188844387182E-4 40-41 2.777424961722277E-4 0.0011964292142803655 0.0 0.03408755020329148 1.3887124808611385E-4 42-43 2.777424961722277E-4 0.0012445000309255587 0.0 0.041335561113016735 1.3887124808611385E-4 44-45 2.937661017206254E-4 0.0013726888753127406 0.0 0.050148544164635496 1.3887124808611385E-4 46-47 3.0978970726902317E-4 0.0014421244993557977 0.0 0.060109885613889434 1.495536517850457E-4 48-49 3.0978970726902317E-4 0.0014421244993557977 0.0 0.06925936438202454 1.7091845918290935E-4 50-51 3.0978970726902317E-4 0.0015115601233988544 0.0 0.07816314786508423 1.7091845918290935E-4 52-53 3.151309091184891E-4 0.0015169013252483204 0.0 0.086976130916703 1.9228326658077302E-4 54-55 3.20472110967955E-4 0.0016077017566892412 0.0 0.09504668691124599 2.1364807397863668E-4 56-57 3.20472110967955E-4 0.0016557725733344344 0.0 0.10348578583340215 2.189892758281026E-4 58-59 3.20472110967955E-4 0.0016664549770333663 0.0 0.11176464870007433 2.2433047767756852E-4 60-61 3.418369183658187E-4 0.0017091845918290934 0.0 0.1195254149873483 2.2433047767756852E-4 62-63 3.418369183658187E-4 0.001741231802925889 0.0 0.12697639156735324 2.2433047767756852E-4 64-65 3.418369183658187E-4 0.001933515069506662 0.0 0.13461431021208953 2.2433047767756852E-4 66-67 3.5251932206475055E-4 0.001986927088001321 0.0 0.14189436833291155 2.2967167952703444E-4 68-69 3.8456653316154603E-4 0.0020029506935497193 0.0 0.14941478053695956 2.3501288137650037E-4 70-71 3.8990773501101195E-4 0.002013633097248651 0.0 0.1569618987502549 2.3501288137650037E-4 72-73 3.952489368604779E-4 0.0020243155009475825 0.0 0.162981433234603 2.56377688774364E-4 74-75 3.952489368604779E-4 0.0020563627120443783 0.0 0.16787931533056324 2.56377688774364E-4 76-77 3.952489368604779E-4 0.0021044335286895715 0.0 0.17197067594725413 2.6706009247329585E-4 78-79 4.059313405594097E-4 0.002147163143485299 0.0 0.17560803440674044 2.777424961722277E-4 80-81 4.1127254240887564E-4 0.0021738691527326283 0.0 0.17706084130979516 2.830836980216936E-4 82-83 4.2729614795727336E-4 0.0021898927582810262 0.0 0.17777122115577412 2.8842489987115954E-4 84-85 4.379785516562052E-4 0.0022165987675283557 0.0 0.17858308383689295 2.8842489987115954E-4 86-87 4.379785516562052E-4 0.002248645978625151 0.0 0.1789035559478609 2.991073035700914E-4 88-89 4.4866095535513704E-4 0.002382176024861799 0.0 0.1789943563793018 2.991073035700914E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10410 0.0 42.35121 1 GTATCAA 18400 0.0 34.056442 1 TCAACGC 21995 0.0 27.738726 4 ATCAACG 22350 0.0 27.279665 3 CAACGCA 22350 0.0 27.242725 5 AACGCAG 22890 0.0 26.672459 6 TATCAAC 23450 0.0 26.440664 2 ACGCAGA 26700 0.0 22.789085 7 CGCAGAG 27250 0.0 22.344269 8 GTACATG 27305 0.0 21.619179 1 TACATGG 28400 0.0 20.34956 2 ACATGGG 28870 0.0 19.31722 3 CTTATAC 6595 0.0 18.590324 1 GCAGAGT 33015 0.0 18.392555 9 GTGGTAT 5745 0.0 18.035534 1 CATGGGG 21835 0.0 17.903288 4 AGAGTAC 28265 0.0 17.657185 10-11 TATACAC 8525 0.0 17.480299 3 GAGTACT 16110 0.0 17.232252 12-13 GTACTAG 2135 0.0 17.014927 1 >>END_MODULE