##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138796_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12041066 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33952874272095 33.0 31.0 34.0 31.0 34.0 2 32.50767157990829 34.0 31.0 34.0 31.0 34.0 3 32.626723497736826 34.0 31.0 34.0 31.0 34.0 4 36.14735530890704 37.0 35.0 37.0 35.0 37.0 5 35.983642727313345 37.0 35.0 37.0 35.0 37.0 6 36.02771897438316 37.0 35.0 37.0 35.0 37.0 7 36.0043325898222 37.0 35.0 37.0 35.0 37.0 8 35.986617214788126 37.0 35.0 37.0 35.0 37.0 9 37.82233267386791 39.0 38.0 39.0 35.0 39.0 10-11 37.69867107281033 39.0 37.0 39.0 35.0 39.0 12-13 37.72065533898743 39.0 37.0 39.0 35.0 39.0 14-15 39.04637558667979 40.0 38.0 41.0 36.0 41.0 16-17 38.99866589884982 40.0 38.0 41.0 36.0 41.0 18-19 39.05508478236063 40.0 38.5 41.0 36.0 41.0 20-21 39.050085180200234 40.0 39.0 41.0 36.0 41.0 22-23 39.01438822642136 40.0 39.0 41.0 36.0 41.0 24-25 39.001539485593746 40.0 38.5 41.0 36.0 41.0 26-27 38.90918171593906 40.0 38.0 41.0 35.0 41.0 28-29 38.828915751041144 40.0 38.0 41.0 35.0 41.0 30-31 38.68797075065167 40.0 38.0 41.0 35.0 41.0 32-33 38.60365960053499 40.0 38.0 41.0 35.0 41.0 34-35 38.56331545064784 40.0 38.0 41.0 35.0 41.0 36-37 38.465104356901264 40.0 38.0 41.0 34.0 41.0 38-39 38.43034841536323 40.0 38.0 41.0 34.0 41.0 40-41 38.42507325651988 40.0 38.0 41.0 34.0 41.0 42-43 38.38444166535694 40.0 38.0 41.0 34.0 41.0 44-45 38.27789710003825 40.0 38.0 41.0 34.0 41.0 46-47 38.2194543101536 40.0 38.0 41.0 34.0 41.0 48-49 38.19453371865603 40.0 38.0 41.0 33.0 41.0 50-51 38.1134990298285 40.0 37.5 41.0 33.0 41.0 52-53 37.97545885599136 40.0 37.0 41.0 33.0 41.0 54-55 37.795927105731785 39.5 37.0 41.0 33.0 41.0 56-57 37.670963074282284 39.0 36.5 41.0 33.0 41.0 58-59 37.44502893740254 39.0 36.0 41.0 32.5 41.0 60-61 37.274436479735115 39.0 36.0 40.0 32.0 41.0 62-63 37.053225376427626 39.0 35.0 40.0 31.5 41.0 64-65 36.725869191209725 38.0 35.0 40.0 31.0 41.0 66-67 36.64905526843562 38.0 35.0 40.0 31.0 41.0 68-69 36.41213420478614 37.0 35.0 40.0 31.0 41.0 70-71 36.09671041500315 37.0 35.0 39.0 31.0 41.0 72-73 35.77798175647193 36.0 34.0 39.0 31.0 41.0 74-75 35.37725572337408 36.0 34.0 39.0 30.5 40.0 76-77 33.33553027499369 34.5 32.0 36.5 27.5 39.0 78-79 34.52915104308289 35.0 33.5 37.0 30.0 39.0 80-81 34.54150723818383 35.0 34.0 37.0 30.0 39.0 82-83 34.259402342109915 35.0 34.0 36.0 30.0 38.5 84-85 34.00852001901431 35.0 34.0 36.0 30.0 37.0 86-87 33.8067558514213 35.0 34.0 35.5 30.0 37.0 88-89 33.57419176295869 35.0 33.0 35.0 29.5 36.5 90-91 33.416841362411986 35.0 33.0 35.0 29.0 36.0 92-93 33.356285231736464 35.0 33.0 35.0 29.0 36.0 94-95 33.33630369585614 35.0 33.0 35.0 29.0 36.0 96-97 33.37423703992273 35.0 33.0 35.0 30.0 35.5 98-99 33.406905363202185 35.0 33.0 35.0 30.0 35.0 100-101 32.12944126150496 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 21.0 20 45.0 21 206.0 22 1032.0 23 3325.0 24 9257.0 25 20425.0 26 38433.0 27 63317.0 28 94463.0 29 132615.0 30 177344.0 31 230807.0 32 303380.0 33 411258.0 34 597621.0 35 919810.0 36 1625623.0 37 2916746.0 38 3258609.0 39 1220485.0 40 16243.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5957690124778 20.39495506460973 14.081734956024658 23.927540966887815 2 14.566087097350206 21.104384766476613 41.9213075814643 22.40822055470888 3 18.499351386007547 25.921355761037653 30.143060494674057 25.436232358280748 4 12.525859438597506 17.91573464723781 39.01474438541862 30.543661528746064 5 13.201910795228992 37.92570587639294 35.73932859731618 13.133054731061883 6 30.126311075780166 38.10045555767238 18.774160028688488 12.999073337858958 7 26.735608519678284 32.40357891930656 23.223618508827915 17.637194052187244 8 24.11493007323462 37.63040624611225 21.07221593907363 17.182447741579495 9 25.428110291987682 17.061501914782227 21.26597534302639 36.244412450203704 10-11 24.178800393669707 26.941132293311256 29.0185783915924 19.861488921426634 12-13 24.921040794855724 24.28513163494014 29.269099781181474 21.524727789022666 14-15 21.984911633647023 25.82949680945996 26.61861305457615 25.56697850231686 16-17 21.769691422990494 29.00696142491517 27.270257302187794 21.953089849906537 18-19 21.815665806969733 28.320389433991096 28.777657956335258 21.086286802703913 20-21 22.529842033587354 27.482140250654187 28.651877788590646 21.33613992716781 22-23 22.257983627625705 27.393518477373675 28.532868547653834 21.815629347346785 24-25 22.02942075029165 27.514339339479672 28.55450610510995 21.901733805118734 26-27 22.000128727503697 27.705092352842502 28.457786748720963 21.836992170932838 28-29 21.95953055029206 27.767105265948032 28.47721225037767 21.796151933382237 30-31 22.23172765411071 27.59075674002452 28.388116665067237 21.78939894079753 32-33 21.99577227967422 27.77521611740231 28.334936475065458 21.894075127858013 34-35 22.101419264660375 27.769056517159 28.365353848495108 21.764170369685512 36-37 22.142549425168408 27.727505078843073 28.286433172361964 21.843512323626555 38-39 21.980807556646 27.845069841077013 28.364603634947322 21.80951896732967 40-41 22.18352224386831 27.695487429734705 28.270981695793463 21.850008630603522 42-43 22.113274623392797 27.756612807498716 28.13243682015335 21.99767574895514 44-45 22.165904183383866 27.846870730512087 27.989645869516654 21.997579216587386 46-47 22.196702984653406 27.84507424962854 27.801222472134118 22.157000293583934 48-49 22.15514197570596 27.936099520509778 27.79781135189366 22.110947151890603 50-51 22.16142318410604 27.98008928299682 27.72247790506738 22.136009627829765 52-53 22.31111109113339 27.926653497852854 27.59798903268103 22.164246378332724 54-55 22.269067468536125 27.83541271178928 27.64116205775374 22.254357761920858 56-57 22.25847565101795 27.928097089875386 27.6363810642206 22.17704619488606 58-59 22.276201897318757 27.973465014689523 27.60048320063283 22.14984988735889 60-61 22.32604812681758 27.91408455155851 27.623444434137173 22.136422887486738 62-63 22.305642403123514 27.964824165615116 27.575954810160948 22.15357862110043 64-65 22.299260670805722 27.931497662856064 27.52962105499262 22.239620611345597 66-67 22.33813701762627 27.928221919327033 27.47158530237647 22.262055760670226 68-69 22.24252671847716 27.967535858660224 27.526337605816977 22.263599817045645 70-71 22.278621139861123 27.747279432222495 27.591890746677755 22.382208681238627 72-73 22.30484250700821 27.798082426036157 27.559238127844825 22.337836939110808 74-75 22.1728041065347 27.929509030102217 27.540114623474942 22.35757223988814 76-77 22.32764331748689 27.862730952551157 27.450054793667256 22.359570936294695 78-79 22.269911337328416 27.893564718252673 27.42921924801785 22.407304696401063 80-81 22.265074735770472 27.90111684276769 27.459133563637284 22.374674857824562 82-83 22.296965205375283 27.86786257545296 27.549134996966117 22.28603722220564 84-85 22.368421963889386 27.83844183012274 27.491876185702374 22.301260020285497 86-87 22.2413553959181 27.87541562567006 27.553803220254963 22.329425758156876 88-89 22.315020854557087 27.86516566603115 27.44545172196809 22.37436175744368 90-91 22.331255888389137 27.8575330068645 27.49638586686792 22.314825237878445 92-93 22.3104610419343 27.866453757946125 27.50315558188908 22.319929618230496 94-95 22.21335393006594 27.87866366786303 27.548731131782667 22.359251270288365 96-97 22.195982176012315 27.920459002917585 27.560836754404676 22.322722066665417 98-99 22.41772443375678 28.447361116420193 27.68950477887408 21.445409670948944 100-101 23.219176190901052 31.013734129378808 24.753368038562517 21.013721641157627 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2421.0 1 2059.0 2 2595.5 3 3723.0 4 5095.0 5 8176.5 6 10734.5 7 12511.5 8 13699.5 9 13412.5 10 12194.5 11 11084.5 12 11890.0 13 15547.5 14 24367.0 15 36374.0 16 45757.0 17 51148.0 18 52767.5 19 51208.5 20 48581.0 21 46811.0 22 47914.5 23 54233.5 24 66510.5 25 84492.0 26 107701.5 27 133484.5 28 161147.0 29 189207.0 30 214857.5 31 239929.0 32 265187.5 33 289816.5 34 314354.0 35 338417.5 36 364341.5 37 389234.5 38 410619.0 39 427543.0 40 444011.0 41 462967.0 42 477601.0 43 490076.5 44 502994.5 45 513295.0 46 517995.0 47 520189.0 48 520721.5 49 514997.5 50 503982.0 51 487807.0 52 463947.5 53 437426.0 54 411040.0 55 380799.0 56 348266.5 57 314218.5 58 277591.5 59 239381.5 60 199503.0 61 162078.5 62 128897.0 63 99986.0 64 75431.5 65 55711.5 66 41832.0 67 32064.0 68 24612.5 69 18098.5 70 13120.5 71 9586.5 72 6805.5 73 4698.5 74 3298.5 75 2368.0 76 1618.0 77 1067.0 78 740.5 79 543.0 80 402.5 81 281.5 82 202.5 83 142.0 84 96.5 85 69.5 86 52.5 87 42.0 88 30.0 89 21.5 90 16.0 91 10.0 92 8.5 93 6.5 94 3.5 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004285334869852885 3 4.98294752308475E-5 4 6.643930030779667E-5 5 4.98294752308475E-5 6 0.0 7 8.304912538474584E-6 8 3.3219650153898335E-4 9 8.304912538474584E-5 10-11 6.228684403855937E-5 12-13 3.155866764620342E-4 14-15 8.304912538474584E-6 16-17 5.688865088855089E-4 18-19 8.304912538474584E-6 20-21 4.983099610043387E-5 22-23 0.0 24-25 0.0 26-27 7.063802508048787E-5 28-29 4.157851328874232E-6 30-31 6.661384466342543E-5 32-33 3.9228096230860184E-4 34-35 0.0 36-37 4.077265269736738E-4 38-39 0.0011547412002904534 40-41 0.0 42-43 0.0 44-45 3.4631974663247334E-4 46-47 0.0 48-49 8.829251805670287E-6 50-51 8.466722083590788E-5 52-53 5.034360182490163E-4 54-55 0.0032782889127452803 56-57 0.003419288540806027 58-59 0.004215716356988711 60-61 9.103721358525461E-4 62-63 4.714424890843384E-6 64-65 6.140570219062701E-4 66-67 0.0 68-69 0.0 70-71 9.831303677074707E-6 72-73 1.7396853187608014E-4 74-75 4.522347633063547E-5 76-77 0.0 78-79 0.0 80-81 5.199959773111195E-4 82-83 0.0 84-85 0.0 86-87 5.392833108155587E-6 88-89 0.0 90-91 0.0010868621325366263 92-93 2.140423135743551E-4 94-95 1.717921129897342E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 199.0 20-21 829.0 22-23 1795.0 24-25 3861.0 26-27 6364.0 28-29 12131.0 30-31 27177.0 32-33 32580.0 34-35 45119.0 36-37 69035.0 38-39 84051.0 40-41 84294.0 42-43 96587.0 44-45 112166.0 46-47 111791.0 48-49 107648.0 50-51 98307.0 52-53 95016.0 54-55 102486.0 56-57 106159.0 58-59 106644.0 60-61 105845.0 62-63 101518.0 64-65 104466.0 66-67 111156.0 68-69 113804.0 70-71 113534.0 72-73 108737.0 74-75 110554.0 76-77 107223.0 78-79 115155.0 80-81 117429.0 82-83 113818.0 84-85 113002.0 86-87 118685.0 88-89 127852.0 90-91 142875.0 92-93 141035.0 94-95 162239.0 96-97 252572.0 98-99 1031741.0 100-101 7323587.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.27121919785242 #Duplication Level Percentage of deduplicated Percentage of total 1 89.7072093449059 76.49443111677105 2 7.20233141255779 12.283031612315867 3 1.780515888673858 4.554802818851026 4 0.6207108230486579 2.11715074602646 5 0.2815855537297146 1.2005571737517573 6 0.13409666405153525 0.6860751620423544 7 0.0865645665504673 0.5167026290364386 8 0.048591737668288705 0.33147813711337504 9 0.034045769965637095 0.2612811882149551 >10 0.10120989531684942 1.3273379866174317 >50 0.002644565239908411 0.15189588764861847 >100 4.7809933076370544E-4 0.06756799812515417 >500 1.5678960580336713E-5 0.007687543485532181 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.304912538474584E-6 2 0.0 1.660982507694917E-5 0.0 8.304912538474584E-6 2.491473761542375E-5 3 0.0 1.660982507694917E-5 0.0 1.660982507694917E-5 2.491473761542375E-5 4 0.0 5.813438776932209E-5 0.0 2.491473761542375E-5 2.491473761542375E-5 5 0.0 6.643930030779667E-5 0.0 3.321965015389834E-5 2.491473761542375E-5 6 1.660982507694917E-5 6.643930030779667E-5 0.0 3.321965015389834E-5 4.152456269237292E-5 7 1.660982507694917E-5 6.643930030779667E-5 0.0 4.98294752308475E-5 4.152456269237292E-5 8 1.660982507694917E-5 6.643930030779667E-5 0.0 6.643930030779667E-5 4.98294752308475E-5 9 1.660982507694917E-5 1.4118351315406792E-4 0.0 9.9658950461695E-5 5.813438776932209E-5 10-11 3.321965015389834E-5 1.4118351315406792E-4 0.0 1.2872614434635606E-4 5.813438776932209E-5 12-13 4.152456269237292E-5 1.4118351315406792E-4 0.0 1.5364088196177979E-4 6.228684403855939E-5 14-15 4.152456269237292E-5 1.7025070703872896E-4 0.0 1.8270807584644085E-4 7.889666911550854E-5 16-17 5.813438776932209E-5 1.7855561957720356E-4 0.0 1.9931790092339E-4 9.135403792322042E-5 18-19 7.474421284627125E-5 1.951654446541527E-4 0.0 2.0762281346186457E-4 9.135403792322042E-5 20-21 7.889666911550854E-5 2.076228134618646E-4 0.0 2.4084246361576292E-4 9.135403792322042E-5 22-23 8.304912538474584E-5 2.3253755107728835E-4 0.0 2.657572012311867E-4 1.2872614434635606E-4 24-25 9.9658950461695E-5 2.3669000734652564E-4 0.0 2.8651948257737313E-4 1.6609825076949167E-4 26-27 9.9658950461695E-5 2.4084246361576292E-4 0.0 3.3634895780822063E-4 1.7440316330796627E-4 28-29 9.9658950461695E-5 2.4084246361576292E-4 0.0 6.560880905394921E-4 1.8270807584644085E-4 30-31 1.0796386300016959E-4 2.8236702630813585E-4 0.0 0.0015447137321562725 1.8686053211567814E-4 32-33 1.1626877553864417E-4 2.98976851385085E-4 0.0 0.003259678171351274 2.2008018226957646E-4 34-35 1.2042123180788146E-4 3.446538703466952E-4 0.0 0.005344211218508395 2.4084246361576292E-4 36-37 1.2457368807711875E-4 3.944833455775427E-4 0.0 0.008670328690167465 2.4084246361576292E-4 38-39 1.2457368807711875E-4 3.9863580184678E-4 0.0 0.01396471043344501 2.4084246361576292E-4 40-41 1.3287860061559335E-4 4.567701896161021E-4 0.0 0.01954976411556917 2.4084246361576292E-4 42-43 1.3287860061559335E-4 4.609226458853394E-4 0.0 0.024707114801961888 2.4084246361576292E-4 44-45 1.3287860061559335E-4 4.941422960392378E-4 0.0 0.030487333928740198 2.449949198850002E-4 46-47 1.3287860061559335E-4 5.232094899238987E-4 0.0 0.03689872640844258 2.574522886927121E-4 48-49 1.3287860061559335E-4 5.232094899238987E-4 0.0 0.04283258641718267 2.906719388466104E-4 50-51 1.3287860061559335E-4 6.062586153086446E-4 0.0 0.04889102011399987 2.906719388466104E-4 52-53 1.3703105688483064E-4 6.145635278471191E-4 0.0 0.05512385697412505 3.2804404526974606E-4 54-55 1.4118351315406792E-4 6.228684403855938E-4 0.0 0.06128194962140395 3.5711123915440707E-4 56-57 1.4118351315406792E-4 6.477831780010175E-4 0.0 0.06747326191883676 3.6126369542364436E-4 58-59 1.4118351315406792E-4 6.560880905394921E-4 0.0 0.07320365157038422 3.69568607962119E-4 60-61 1.494884256925425E-4 6.602405468087295E-4 0.0 0.07905030999747031 3.8202597676983085E-4 62-63 1.5364088196177979E-4 6.810028281549158E-4 0.0 0.08457307683555593 3.903308893083054E-4 64-65 1.577933382310171E-4 7.640519535396617E-4 0.0 0.09032838122471881 3.944833455775427E-4 66-67 1.577933382310171E-4 7.889666911550854E-4 0.0 0.09628715597107432 4.027882581160173E-4 68-69 1.577933382310171E-4 7.9727160369356E-4 0.0 0.10196771614739093 4.0694071438525457E-4 70-71 1.6194579450025439E-4 8.138814287705091E-4 0.0 0.10793894826255417 4.193980831929665E-4 72-73 1.6609825076949167E-4 8.221863413089838E-4 0.0 0.11281393192263875 5.149045773854241E-4 74-75 1.6609825076949167E-4 8.221863413089838E-4 0.0 0.11692901608545289 5.149045773854241E-4 76-77 1.6609825076949167E-4 8.38796166385933E-4 0.0 0.12069114146538189 5.190570336546614E-4 78-79 1.7440316330796625E-4 8.471010789244075E-4 0.0 0.1239217524428485 5.232094899238987E-4 80-81 1.7440316330796625E-4 8.471010789244075E-4 0.0 0.12541248424350468 5.522766838085598E-4 82-83 1.7440316330796625E-4 8.471010789244075E-4 0.0 0.12609763952792885 5.813438776932208E-4 84-85 1.7440316330796625E-4 8.471010789244075E-4 0.0 0.12679109972489147 5.813438776932208E-4 86-87 1.7440316330796625E-4 8.471010789244075E-4 0.0 0.1271066864013535 5.854963339624582E-4 88-89 1.7440316330796625E-4 8.96930554155255E-4 0.0 0.1272063453518152 5.896487902316954E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12600 0.0 43.47644 1 GTATCAA 21365 0.0 34.120747 1 TCAACGC 24880 0.0 28.53146 4 ATCAACG 25035 0.0 28.303967 3 CAACGCA 25460 0.0 27.814827 5 AACGCAG 26595 0.0 26.707651 6 TATCAAC 26940 0.0 26.665985 2 ACGCAGA 30660 0.0 23.138988 7 CGCAGAG 31090 0.0 22.79166 8 GTACATG 33155 0.0 21.692966 1 TACATGG 33090 0.0 21.248291 2 ACATGGG 33705 0.0 20.31831 3 GCAGAGT 38995 0.0 18.106087 9 CATGGGG 24130 0.0 18.076494 4 AGAGTAC 33795 0.0 17.276192 10-11 GAGTACT 20480 0.0 17.14435 12-13 GTGGTAT 7205 0.0 16.784529 1 CAGAGTA 37755 0.0 16.486849 10-11 GTACTTT 23660 0.0 14.957144 14-15 TGGTATC 7255 0.0 14.855749 2 >>END_MODULE