##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138795_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10302682 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.340359238497314 33.0 31.0 34.0 31.0 34.0 2 32.502286297878555 34.0 31.0 34.0 31.0 34.0 3 32.61920371802216 34.0 31.0 34.0 31.0 34.0 4 36.14402201290887 37.0 35.0 37.0 35.0 37.0 5 35.98318777576557 37.0 35.0 37.0 35.0 37.0 6 36.02742179172375 37.0 35.0 37.0 35.0 37.0 7 36.001721105242304 37.0 35.0 37.0 35.0 37.0 8 35.98714858907613 37.0 35.0 37.0 35.0 37.0 9 37.81822199306938 39.0 38.0 39.0 35.0 39.0 10-11 37.697453633917846 39.0 37.0 39.0 35.0 39.0 12-13 37.717340494446006 39.0 37.0 39.0 35.0 39.0 14-15 39.037875526003816 40.0 38.0 41.0 36.0 41.0 16-17 38.99189788639502 40.0 38.0 41.0 36.0 41.0 18-19 39.05158583949306 40.0 38.5 41.0 36.0 41.0 20-21 39.04900268508531 40.0 39.0 41.0 36.0 41.0 22-23 39.013214054567335 40.0 39.0 41.0 36.0 41.0 24-25 38.99873832873437 40.0 38.0 41.0 36.0 41.0 26-27 38.90290674441715 40.0 38.0 41.0 35.0 41.0 28-29 38.82116552403318 40.0 38.0 41.0 35.0 41.0 30-31 38.67831571221899 40.0 38.0 41.0 35.0 41.0 32-33 38.590558729295154 40.0 38.0 41.0 35.0 41.0 34-35 38.54734952839141 40.0 38.0 41.0 35.0 41.0 36-37 38.44889992073572 40.0 38.0 41.0 34.0 41.0 38-39 38.412362426101524 40.0 38.0 41.0 34.0 41.0 40-41 38.4069104968771 40.0 38.0 41.0 34.0 41.0 42-43 38.365545744953764 40.0 38.0 41.0 34.0 41.0 44-45 38.2558909231372 40.0 38.0 41.0 34.0 41.0 46-47 38.19498795745713 40.0 38.0 41.0 33.0 41.0 48-49 38.17175761104241 40.0 38.0 41.0 33.0 41.0 50-51 38.091369344615465 40.0 37.0 41.0 33.0 41.0 52-53 37.95301551849229 40.0 37.0 41.0 33.0 41.0 54-55 37.774259449802116 39.5 37.0 41.0 33.0 41.0 56-57 37.64675157060858 39.0 36.0 41.0 33.0 41.0 58-59 37.420556006278034 39.0 36.0 41.0 32.5 41.0 60-61 37.25164230042415 39.0 35.5 40.0 32.0 41.0 62-63 37.03079710390995 39.0 35.0 40.0 31.5 41.0 64-65 36.70553221562456 38.0 35.0 40.0 31.0 41.0 66-67 36.633494402103295 38.0 35.0 40.0 31.0 41.0 68-69 36.39774107051984 37.0 35.0 40.0 31.0 41.0 70-71 36.08705637568856 37.0 35.0 39.5 31.0 41.0 72-73 35.77640113595113 36.0 34.0 39.0 31.0 41.0 74-75 35.37785980506261 36.0 34.0 39.0 30.5 40.0 76-77 33.34028742901182 34.5 32.0 36.5 27.5 39.0 78-79 34.53777099202679 35.0 33.5 37.0 30.0 39.0 80-81 34.55398852221189 35.0 34.0 37.0 30.0 39.0 82-83 34.27407957183539 35.0 34.0 36.0 30.0 38.5 84-85 34.02077250266606 35.0 34.0 36.0 30.0 37.0 86-87 33.81629144741929 35.0 34.0 35.5 30.0 37.0 88-89 33.58425660264335 35.0 33.0 35.0 29.5 36.5 90-91 33.423710141542486 35.0 33.0 35.0 29.0 36.0 92-93 33.36177574383214 35.0 33.0 35.0 29.0 36.0 94-95 33.339236118793224 35.0 33.0 35.0 29.0 36.0 96-97 33.37725561450849 35.0 33.0 35.0 30.0 35.5 98-99 33.40851202710609 35.0 33.0 35.0 30.0 35.0 100-101 32.13566198379098 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 9.0 20 42.0 21 189.0 22 871.0 23 2929.0 24 8125.0 25 17581.0 26 32719.0 27 54506.0 28 81025.0 29 113098.0 30 151159.0 31 198984.0 32 261477.0 33 353893.0 34 514295.0 35 792393.0 36 1394741.0 37 2478741.0 38 2767393.0 39 1063804.0 40 14701.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5435611814477 20.47463951619588 14.19271215009839 23.789087152258023 2 14.52453215963298 21.139758840608522 42.096042876922205 22.239666122836294 3 18.36726691201393 26.12084472034256 30.259633516573754 25.25225485106976 4 12.48690024932355 17.99399321166722 39.006134036813926 30.5129725021953 5 13.156916962900498 37.872874143717276 35.77146782892826 13.198741064453959 6 29.98884174043225 38.149192608293646 18.861147029482225 13.000818621791879 7 26.562292529710717 32.49931085892214 23.37493739493025 17.56345921643689 8 23.987686651188433 37.72494234487471 21.130758718153793 17.156612285783062 9 25.358807369699104 17.13834846549046 21.368241038029645 36.13460312678079 10-11 24.132708421316128 26.958930188726676 29.08371290296687 19.824648486990323 12-13 24.914081583755404 24.379175593777973 29.31077985118685 21.395962971279772 14-15 21.968891207163338 25.846119486168746 26.769349961495465 25.41563934517245 16-17 21.68100725712579 29.04381477258361 27.39377532878126 21.881402641509343 18-19 21.693096195058352 28.288787161322375 28.999150803562685 21.018965840056584 20-21 22.43999490212557 27.446855969419744 28.856269740067614 21.256879388387077 22-23 22.174002119814205 27.380632555393458 28.73262689362473 21.712738431167608 24-25 21.94075114355936 27.46774192138945 28.815919057037714 21.775587878013475 26-27 21.914218603202094 27.647161240362404 28.695197977523236 21.743422178912265 28-29 21.834717158876224 27.775542761477713 28.664769294964838 21.72497078468123 30-31 22.13938382958909 27.610651562617633 28.575115353774365 21.67484925401891 32-33 21.925862402813827 27.744160633493326 28.538856882227876 21.791120081464975 34-35 22.022127270587447 27.752031872821902 28.564516748621788 21.661324107968866 36-37 22.036968051392865 27.69242845481913 28.497099618330346 21.77350387545766 38-39 21.937026875406275 27.763794633625572 28.583458411538132 21.71572007943002 40-41 22.109816197919343 27.693785690767648 28.45090799709907 21.745490114213943 42-43 21.985091964090266 27.814952257937254 28.290587633209064 21.909368144763413 44-45 22.10637743164142 27.846342077052938 28.13629834874259 21.910982142563057 46-47 22.12092289950423 27.85350255113233 27.92688059457666 22.09869395478678 48-49 22.114291967761734 27.94922839464671 27.868977176319742 22.06750246127182 50-51 22.09415862472323 28.05204808455529 27.766747086101017 22.08704620462046 52-53 22.222602185203993 27.969623663293596 27.678019345829853 22.129754805672558 54-55 22.1986345961675 27.911696690114578 27.688880819189134 22.200787894528787 56-57 22.20521986730898 27.961176723535143 27.71959284895411 22.114010560201766 58-59 22.213334621737165 28.031622071680694 27.622195966113892 22.13284734046825 60-61 22.23668469268352 27.984398280550366 27.68203580943232 22.09688121733379 62-63 22.26256210914721 28.030825956833194 27.588255314430437 22.11835661958916 64-65 22.222738180494943 28.03481813085566 27.560956092658806 22.18148759599059 66-67 22.269658552714677 27.994627826631657 27.486703808803387 22.249009811850275 68-69 22.210194696352037 28.02400905257488 27.56111612649172 22.20468012458137 70-71 22.19584537521982 27.829026065558637 27.605364979082875 22.369763580138667 72-73 22.267214918184486 27.883094466052178 27.552149863927934 22.297540751835403 74-75 22.108131838025137 28.00490195933712 27.579242782496667 22.307723420141077 76-77 22.268087629094985 27.93966220215418 27.473435776514183 22.31881439223665 78-79 22.224199338769278 27.97454013467063 27.471559269071687 22.329701257488406 80-81 22.2262196540557 27.9733805280299 27.494540641989317 22.30585917592508 82-83 22.214040252238014 27.932139371074104 27.599481824160232 22.25433855252765 84-85 22.32438605078811 27.91234391559926 27.50358971401997 22.25968031959266 86-87 22.186806835022356 27.921402421409784 27.59285269325611 22.29893805031175 88-89 22.299819062195215 27.8624859820153 27.501343591192217 22.336351364597267 90-91 22.292064653950266 27.928292530666717 27.518824127970838 22.26081868741218 92-93 22.26092939484517 27.910311431610186 27.55526146210576 22.273497711438882 94-95 22.183510055606472 27.94348438765751 27.595142321777384 22.277863234958637 96-97 22.203956966019607 27.973890156882565 27.59903149872448 22.22312137837335 98-99 22.406945538606713 28.523006611891926 27.700186213052724 21.369861636448636 100-101 23.204469967416635 31.071759411750378 24.833662686907267 20.890107933925716 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2483.0 1 2100.5 2 2631.5 3 3783.5 4 5157.5 5 8195.0 6 10728.5 7 12520.5 8 13737.0 9 13478.0 10 12070.5 11 10688.5 12 11466.5 13 15178.0 14 23674.5 15 35013.0 16 44197.5 17 49495.5 18 50877.0 19 49220.0 20 46488.5 21 44566.0 22 45419.0 23 51018.0 24 61823.0 25 77378.0 26 97229.5 27 119597.5 28 144364.5 29 170355.5 30 193276.0 31 215524.5 32 238827.0 33 259472.0 34 278105.0 35 296955.0 36 317307.5 37 336463.0 38 352074.0 39 364060.5 40 375741.5 41 388333.5 42 398851.5 43 408827.0 44 417481.5 45 425027.5 46 430283.5 47 432422.5 48 431615.5 49 425466.0 50 417660.0 51 405592.0 52 387896.0 53 369403.5 54 348237.0 55 323320.5 56 297747.5 57 270844.5 58 242091.5 59 211532.0 60 177190.5 61 144621.0 62 116233.0 63 90206.0 64 67578.5 65 50282.5 66 37764.5 67 28653.0 68 21713.5 69 15627.5 70 11161.5 71 8229.5 72 5951.0 73 4186.5 74 2919.0 75 1993.0 76 1396.5 77 978.5 78 662.5 79 456.5 80 333.0 81 242.0 82 172.5 83 118.5 84 79.0 85 58.0 86 50.5 87 40.0 88 27.0 89 16.0 90 11.5 91 10.0 92 7.5 93 4.5 94 2.0 95 1.0 96 1.0 97 1.5 98 2.5 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004367794715977839 3 5.823726287970453E-5 4 4.853105239975378E-5 5 9.706210479950756E-5 6 0.0 7 1.941242095990151E-5 8 4.076608401579317E-4 9 8.735589431955678E-5 10-11 4.853105239975378E-5 12-13 2.96039419638498E-4 14-15 0.0 16-17 4.8045741875756237E-4 18-19 9.706210479950755E-6 20-21 1.9413074802945158E-5 22-23 0.0 24-25 0.0 26-27 8.741847559370866E-5 28-29 1.4579712805901208E-5 30-31 7.786522745771248E-5 32-33 4.0492296560115985E-4 34-35 0.0 36-37 3.63722960085583E-4 38-39 0.0011378111975462854 40-41 0.0 42-43 0.0 44-45 2.8883556297496985E-4 46-47 0.0 48-49 0.0 50-51 5.222038464490921E-5 52-53 6.112156061469954E-4 54-55 0.0030889572913640625 56-57 0.0035269217939180404 58-59 0.004104720808494441 60-61 9.202918267294269E-4 62-63 1.1066339774367291E-5 64-65 5.643843837634995E-4 66-67 0.0 68-69 0.0 70-71 5.773984757373119E-6 72-73 9.927569040256934E-5 74-75 1.771365382607837E-5 76-77 0.0 78-79 0.0 80-81 4.6468910067434333E-4 82-83 0.0 84-85 0.0 86-87 6.34621134038774E-6 88-89 0.0 90-91 0.0011686089949205331 92-93 1.6580865111279824E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 196.0 20-21 776.0 22-23 1589.0 24-25 3628.0 26-27 5885.0 28-29 10787.0 30-31 24296.0 32-33 29119.0 34-35 39581.0 36-37 61027.0 38-39 74228.0 40-41 75179.0 42-43 85126.0 44-45 99153.0 46-47 100097.0 48-49 95128.0 50-51 86952.0 52-53 83616.0 54-55 89290.0 56-57 92711.0 58-59 93264.0 60-61 92581.0 62-63 88279.0 64-65 91345.0 66-67 95826.0 68-69 98606.0 70-71 98723.0 72-73 94179.0 74-75 95639.0 76-77 92976.0 78-79 99755.0 80-81 102099.0 82-83 98846.0 84-85 98340.0 86-87 102608.0 88-89 110851.0 90-91 122050.0 92-93 120622.0 94-95 138316.0 96-97 215441.0 98-99 877057.0 100-101 6216915.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.70134620188881 #Duplication Level Percentage of deduplicated Percentage of total 1 88.93749872871429 74.44188371422162 2 7.473181993770544 12.5103078658062 3 1.9848997662712875 4.984163475381638 4 0.7355200019351542 2.4625605728155313 5 0.3458432903776531 1.4473774489750153 6 0.17127003625517248 0.8601319559162544 7 0.10705307696258257 0.6272340659775799 8 0.06490282960225806 0.43459633680166404 9 0.04323844004904024 0.32572040757968984 >10 0.1340068353887782 1.7242812625161457 >50 0.002119714106724913 0.11667750248727453 >100 4.652865665985697E-4 0.06506539152144501 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.706210479950755E-6 2 0.0 0.0 0.0 9.706210479950755E-6 9.706210479950755E-6 3 0.0 0.0 0.0 9.706210479950755E-6 9.706210479950755E-6 4 0.0 1.941242095990151E-5 0.0 9.706210479950755E-6 9.706210479950755E-6 5 0.0 1.941242095990151E-5 0.0 9.706210479950755E-6 9.706210479950755E-6 6 0.0 2.9118631439852264E-5 0.0 9.706210479950755E-6 1.941242095990151E-5 7 0.0 2.9118631439852264E-5 0.0 9.706210479950755E-6 1.941242095990151E-5 8 0.0 2.9118631439852264E-5 0.0 9.706210479950755E-6 1.941242095990151E-5 9 0.0 9.706210479950755E-5 0.0 9.706210479950755E-6 2.9118631439852264E-5 10-11 0.0 9.706210479950755E-5 0.0 9.706210479950755E-6 2.9118631439852264E-5 12-13 0.0 1.0191521003948292E-4 0.0 9.706210479950755E-6 2.9118631439852264E-5 14-15 0.0 2.135366305589166E-4 0.0 1.4559315719926132E-5 3.882484191980302E-5 16-17 0.0 2.135366305589166E-4 0.0 2.9118631439852264E-5 3.882484191980302E-5 18-19 0.0 2.523614724787196E-4 0.0 4.853105239975377E-5 4.367794715977839E-5 20-21 0.0 2.9118631439852265E-4 0.0 6.794347335965529E-5 4.853105239975377E-5 22-23 0.0 3.203049458383749E-4 0.0 8.250278907958141E-5 9.706210479950755E-5 24-25 0.0 3.7854220871807944E-4 0.0 1.261807362393598E-4 1.5529936767921207E-4 26-27 0.0 4.076608401579317E-4 0.0 2.9118631439852265E-4 1.6500557815916282E-4 28-29 0.0 4.076608401579317E-4 0.0 0.0014171067300728102 1.6500557815916282E-4 30-31 0.0 4.5133878731771007E-4 0.0 0.004950167344774885 1.698586833991382E-4 32-33 0.0 4.5619189255768547E-4 0.0 0.011720249154540535 1.7471178863911357E-4 34-35 0.0 5.095760501974147E-4 0.0 0.019960821852018727 1.8441799911906434E-4 36-37 0.0 5.629602078371438E-4 0.0 0.03409306431082702 1.8441799911906434E-4 38-39 0.0 5.7751952355707E-4 0.0 0.05217573443497528 1.8441799911906434E-4 40-41 0.0 5.92078839276996E-4 0.0 0.06561883594970708 1.8927110435903972E-4 42-43 0.0 6.16344365476873E-4 0.0 0.07610154326805389 1.9897731483899047E-4 44-45 0.0 7.182595755163559E-4 0.0 0.0870598548999183 2.0383042007896584E-4 46-47 0.0 7.862030488760112E-4 0.0 0.09995455552253288 2.0383042007896584E-4 48-49 0.0 7.862030488760112E-4 0.0 0.11040814420943984 2.0383042007896584E-4 50-51 0.0 8.638527327156172E-4 0.0 0.11969213453351273 2.0383042007896584E-4 52-53 0.0 8.638527327156172E-4 0.0 0.1278356451261914 2.1838973579889196E-4 54-55 0.0 8.784120484355433E-4 0.0 0.136197545454669 2.329490515188181E-4 56-57 0.0 8.929713641554694E-4 0.0 0.14426340636350807 2.329490515188181E-4 58-59 0.0 9.075306798753955E-4 0.0 0.1515915952758709 2.3780215675879348E-4 60-61 0.0 9.269431008352971E-4 0.0 0.15883242829391414 2.475083672387442E-4 62-63 0.0 9.366493113152478E-4 0.0 0.16602473025955766 2.523614724787196E-4 64-65 0.0 0.0010191521003948293 0.0 0.172658925122604 2.523614724787196E-4 66-67 9.706210479950755E-6 0.0010337114161147554 0.0 0.17933679793281013 2.523614724787196E-4 68-69 9.706210479950755E-6 0.0010579769423146321 0.0 0.18631556326789472 2.523614724787196E-4 70-71 9.706210479950755E-6 0.001082242468514509 0.0 0.19302255470954066 2.6206768295867035E-4 72-73 9.706210479950755E-6 0.0010919486789944598 0.0 0.19828332078967398 3.008925248784734E-4 74-75 9.706210479950755E-6 0.0011210673104343123 0.0 0.2025540534008523 3.008925248784734E-4 76-77 9.706210479950755E-6 0.0011501859418741643 0.0 0.2058881367007154 3.008925248784734E-4 78-79 9.706210479950755E-6 0.0011550390471141397 0.0 0.20907177373813926 3.008925248784734E-4 80-81 9.706210479950755E-6 0.0011550390471141397 0.0 0.21059564878349152 3.1059873535842415E-4 82-83 9.706210479950755E-6 0.0011550390471141397 0.0 0.21117802141228859 3.203049458383749E-4 84-85 9.706210479950755E-6 0.0011550390471141397 0.0 0.2117603940410856 3.251580510783503E-4 86-87 9.706210479950755E-6 0.0011647452575940906 0.0 0.21208555209216395 3.3001115631832564E-4 88-89 9.706210479950755E-6 0.001184157678553992 0.0 0.21218746730220345 3.3001115631832564E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11395 0.0 44.824173 1 GTATCAA 20030 0.0 34.809628 1 TCAACGC 23515 0.0 28.768957 4 ATCAACG 23705 0.0 28.538368 3 CAACGCA 24100 0.0 28.08817 5 AACGCAG 24670 0.0 27.473734 6 TATCAAC 25155 0.0 27.39839 2 ACGCAGA 28905 0.0 23.41918 7 CGCAGAG 29275 0.0 23.123192 8 GTACATG 28585 0.0 21.388964 1 TACATGG 28570 0.0 20.91191 2 ACATGGG 28490 0.0 20.257662 3 GCAGAGT 35180 0.0 19.181751 9 CATGGGG 20635 0.0 18.543564 4 GAGTACT 19985 0.0 17.983377 12-13 AGAGTAC 31405 0.0 17.596655 10-11 GTGGTAT 6525 0.0 17.496168 1 CAGAGTA 34385 0.0 17.07995 10-11 TGGTATC 6290 0.0 15.998824 2 GTACTTT 23340 0.0 15.44414 14-15 >>END_MODULE