##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138792_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11252341 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37743897025517 33.0 31.0 34.0 31.0 34.0 2 32.54486377545793 34.0 31.0 34.0 31.0 34.0 3 32.66142325405887 34.0 31.0 34.0 31.0 34.0 4 36.16947753360834 37.0 35.0 37.0 35.0 37.0 5 36.01068622076064 37.0 35.0 37.0 35.0 37.0 6 36.05568619010035 37.0 35.0 37.0 35.0 37.0 7 36.03214975443777 37.0 35.0 37.0 35.0 37.0 8 36.01779194213897 37.0 35.0 37.0 35.0 37.0 9 37.85073132781881 39.0 38.0 39.0 35.0 39.0 10-11 37.73509761213245 39.0 37.0 39.0 35.0 39.0 12-13 37.75204306375002 39.0 37.0 39.0 35.0 39.0 14-15 39.08326525120417 40.0 38.5 41.0 36.0 41.0 16-17 39.03633159535425 40.0 38.0 41.0 36.0 41.0 18-19 39.09738951210241 40.0 38.5 41.0 36.0 41.0 20-21 39.0968976662824 40.0 39.0 41.0 36.0 41.0 22-23 39.0628378668998 40.0 39.0 41.0 36.0 41.0 24-25 39.04792951444027 40.0 39.0 41.0 36.0 41.0 26-27 38.95283229374168 40.0 38.0 41.0 35.5 41.0 28-29 38.871439254978974 40.0 38.0 41.0 35.0 41.0 30-31 38.73197583122713 40.0 38.0 41.0 35.0 41.0 32-33 38.64457814854607 40.0 38.0 41.0 35.0 41.0 34-35 38.60095420751986 40.0 38.0 41.0 35.0 41.0 36-37 38.50339370536348 40.0 38.0 41.0 34.5 41.0 38-39 38.46862220592905 40.0 38.0 41.0 34.0 41.0 40-41 38.465962186070094 40.0 38.0 41.0 34.0 41.0 42-43 38.428181929034565 40.0 38.0 41.0 34.0 41.0 44-45 38.321984749706345 40.0 38.0 41.0 34.0 41.0 46-47 38.26422531865538 40.0 38.0 41.0 34.0 41.0 48-49 38.238563552243164 40.0 38.0 41.0 34.0 41.0 50-51 38.162261664815546 40.0 37.5 41.0 33.0 41.0 52-53 38.0331251884173 40.0 37.0 41.0 33.0 41.0 54-55 37.8617275214879 40.0 37.0 41.0 33.0 41.0 56-57 37.73989930794599 39.0 37.0 41.0 33.0 41.0 58-59 37.518338978207595 39.0 36.0 41.0 32.5 41.0 60-61 37.35535018257696 39.0 36.0 40.5 32.0 41.0 62-63 37.137820579007865 39.0 35.0 40.0 32.0 41.0 64-65 36.81719551428202 38.5 35.0 40.0 31.0 41.0 66-67 36.74342508372835 38.0 35.0 40.0 31.5 41.0 68-69 36.507626415794064 37.5 35.0 40.0 31.0 41.0 70-71 36.193315371018514 37.0 35.0 39.5 31.0 41.0 72-73 35.87706593591466 36.5 34.5 39.0 31.0 41.0 74-75 35.478090915553956 36.0 34.0 39.0 30.5 40.0 76-77 33.42828198286607 34.5 32.0 36.5 27.5 39.0 78-79 34.630670601702334 35.0 34.0 37.0 30.0 39.0 80-81 34.6371233965469 35.0 34.0 37.0 30.0 39.0 82-83 34.3515220114687 35.0 34.0 36.5 30.0 39.0 84-85 34.093984080902786 35.0 34.0 36.0 30.0 37.0 86-87 33.886531447589704 35.0 34.0 36.0 30.0 37.0 88-89 33.64851070193207 35.0 33.5 35.0 30.0 36.5 90-91 33.48463768898388 35.0 33.0 35.0 29.5 36.0 92-93 33.41875525177035 35.0 33.0 35.0 29.0 36.0 94-95 33.39134755238173 35.0 33.0 35.0 30.0 36.0 96-97 33.425996866077696 35.0 33.0 35.0 30.0 35.5 98-99 33.45242190225798 35.0 33.0 35.0 30.0 35.0 100-101 32.16026864639515 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 15.0 20 60.0 21 209.0 22 888.0 23 3073.0 24 8432.0 25 18636.0 26 34648.0 27 56727.0 28 85083.0 29 118939.0 30 158881.0 31 207397.0 32 273102.0 33 372606.0 34 538512.0 35 828756.0 36 1469609.0 37 2687685.0 38 3117902.0 39 1251035.0 40 20140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.56822122614307 20.296807570975677 14.125158489242374 24.00981271363888 2 14.39416912108441 21.120814232719685 42.01945996292155 22.46555668327435 3 18.344691130165142 26.00816239909089 30.248484558174578 25.398661912569388 4 12.388783054037154 17.928959081548605 39.147262985130546 30.53499487928369 5 13.062671192306732 37.921067199320746 35.87347368291957 13.142787925452955 6 29.958459310822523 38.16209444772426 18.86085748734419 13.018588754109034 7 26.439729553117804 32.53549328721788 23.407408895163933 17.617368264500385 8 23.960485579077766 37.50685748874208 21.304912232586823 17.227744699593337 9 25.33934311193204 17.001512931368513 21.41807455310581 36.24106940359364 10-11 23.987923575342617 26.96251898605596 29.188700978294552 19.860856460306866 12-13 24.73807934823697 24.434879396547046 29.363320537590926 21.46372071762506 14-15 21.834983738270605 25.908514402715987 26.890003629911806 25.3664982291016 16-17 21.515721958058663 29.034846068639553 27.56427848274058 21.88515349056121 18-19 21.54570420260567 28.33382530505542 29.113951892941742 21.006518599397165 20-21 22.25253645910704 27.531036716240127 29.015232063439996 21.20119476121284 22-23 21.969212801505297 27.42293812273949 28.894779259604253 21.713069816150956 24-25 21.727872711979934 27.5569314058272 28.971556367054735 21.74363951513813 26-27 21.75047898097839 27.74049714412386 28.815162146484024 21.693861728413726 28-29 21.643310927356808 27.85387400422868 28.845994162229573 21.656820906184944 30-31 21.9862000280668 27.653947282985968 28.757964646078193 21.60188804286903 32-33 21.737998948576546 27.81985581691201 28.714133244798685 21.728011989712762 34-35 21.81411437538607 27.85781324353277 28.753905991858087 21.57416638922307 36-37 21.85901906495972 27.784289201706535 28.671343509354713 21.685348223979027 38-39 21.70927312951704 27.924495859879904 28.727585927652072 21.63864508295098 40-41 21.9428033772474 27.75957322051456 28.6299200314285 21.667703370809534 42-43 21.80500304391334 27.889280377584463 28.46855734548815 21.837159233014045 44-45 21.899482843058326 27.97298230520245 28.316390113131224 21.811144738608 46-47 21.951746625894607 27.932296506729394 28.116014448294358 21.999942419081638 48-49 21.907420809393987 28.020051569492015 28.117572812644443 21.954954808469555 50-51 21.91002696220148 28.121063689802174 28.02228537208237 21.94662397591398 52-53 22.049810397309162 28.04190124679448 27.86333614723628 22.044952208660078 54-55 22.01654894394152 27.983771675265707 27.913308873922198 22.086370506870576 56-57 22.013990952266976 28.040203465198672 27.94693704368192 21.998868538852438 58-59 21.986447333548934 28.100070372632107 27.897863377739405 22.01561891607955 60-61 22.088778819630946 28.04897358060027 27.909264075560912 21.952983524207873 62-63 22.069278180397287 28.096394754845388 27.850408847021495 21.983918217735827 64-65 22.008959607528052 28.067786578942012 27.82516211868245 22.09809169484749 66-67 22.073846567864173 28.060951614245553 27.72433267564946 22.14086914224081 68-69 22.008387768292987 28.07010589554834 27.81464172763442 22.10686460852425 70-71 22.03734512207546 27.866926465622953 27.884043113256308 22.211685299045275 72-73 22.104742840383473 27.877203817670686 27.82373182085667 22.19432152108917 74-75 21.949281401282917 27.99359278290787 27.83050325897963 22.226622556829582 76-77 22.064902478648698 27.948523095714933 27.753701806039295 22.232872619597078 78-79 22.02235331825592 27.93664758999813 27.758181283977468 22.282817807768478 80-81 22.027116079577432 27.983621908754934 27.762118368613304 22.22714364305433 82-83 22.080553076183147 27.860252365189485 27.882966389718682 22.176228168908683 84-85 22.190406551131165 27.86863065533417 27.796333212479812 22.144629581054858 86-87 22.040825057899045 27.85027630751235 27.887635650204185 22.221262984384417 88-89 22.103268518001 27.80068412366185 27.817535164630737 22.27851219370641 90-91 22.14524517941808 27.8414004526568 27.82808844113199 22.185265926793136 92-93 22.130493783667294 27.76252615150257 27.91312485608063 22.19385520874951 94-95 22.06672358586174 27.77171236124382 27.924164212816226 22.237399840078208 96-97 22.05315123534574 27.82271541916676 27.94495925163028 22.179174093857217 98-99 22.301776718816928 28.34155131845442 28.05021574999249 21.30645621273616 100-101 23.003479831984283 30.921520154756184 25.23057381730075 20.844426195958782 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1877.0 1 1729.0 2 2535.5 3 3778.5 4 5104.0 5 8166.0 6 11022.5 7 13546.5 8 15688.5 9 15801.0 10 14110.5 11 12419.5 12 13277.0 13 17203.0 14 26131.5 15 38030.5 16 47483.5 17 52819.5 18 54239.5 19 52869.5 20 50644.5 21 49384.0 22 51018.0 23 58135.0 24 71080.5 25 88940.0 26 111807.0 27 136332.5 28 162012.0 29 188870.0 30 213978.0 31 238594.5 32 263281.0 33 286716.0 34 309712.0 35 331615.0 36 355533.0 37 377916.5 38 393875.5 39 407182.0 40 422557.0 41 436550.5 42 446134.5 43 457010.0 44 467822.0 45 475534.0 46 478808.5 47 479089.0 48 478120.0 49 470530.0 50 459066.0 51 444872.5 52 423381.0 53 400596.0 54 376287.0 55 347298.5 56 317611.5 57 286631.0 58 254560.0 59 220392.0 60 184615.5 61 151071.0 62 119935.0 63 93091.5 64 70226.5 65 53049.0 66 40654.0 67 30872.5 68 23271.5 69 16710.5 70 11718.5 71 8439.5 72 5970.5 73 4160.0 74 2924.5 75 2000.5 76 1343.5 77 925.0 78 666.0 79 479.0 80 330.5 81 216.5 82 151.0 83 102.0 84 72.0 85 53.5 86 46.0 87 38.5 88 24.5 89 15.5 90 11.5 91 7.5 92 4.5 93 3.0 94 3.0 95 3.0 96 3.0 97 3.0 98 1.5 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004630147628835635 3 1.066444751363294E-4 4 7.998335635224706E-5 5 8.887039594694118E-5 6 0.0 7 1.7774079189388235E-5 8 3.9102974216654115E-4 9 1.1553151473102353E-4 10-11 3.554815837877647E-5 12-13 2.7105470763817056E-4 14-15 1.3330559392041175E-5 16-17 4.7101309851878823E-4 18-19 4.443519797347059E-6 20-21 3.5549363646394214E-5 22-23 0.0 24-25 0.0 26-27 4.44684475242303E-5 28-29 8.899853508411251E-6 30-31 8.912917718929447E-5 32-33 4.244998051769315E-4 34-35 0.0 36-37 3.829204159831162E-4 38-39 9.663173527731584E-4 40-41 0.0 42-43 0.0 44-45 2.792114770063765E-4 46-47 9.408645905799508E-6 48-49 4.278913869029578E-5 50-51 3.0737554832315834E-4 52-53 5.818156147771663E-4 54-55 0.0030005141500918852 56-57 0.0031944954195584022 58-59 0.004067963374136738 60-61 8.030378467191661E-4 62-63 5.1031241887627265E-6 64-65 4.742965550552357E-4 66-67 0.0 68-69 0.0 70-71 1.6001849387073163E-5 72-73 1.2951117786692823E-4 74-75 4.3663720147865005E-5 76-77 0.0 78-79 0.0 80-81 4.6957262724244263E-4 82-83 0.0 84-85 0.0 86-87 5.8768822551947965E-6 88-89 0.0 90-91 9.378829247400991E-4 92-93 1.4760939209039993E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 230.0 20-21 831.0 22-23 1726.0 24-25 4320.0 26-27 6525.0 28-29 12327.0 30-31 28853.0 32-33 34689.0 34-35 47233.0 36-37 72228.0 38-39 86905.0 40-41 86500.0 42-43 97470.0 44-45 114866.0 46-47 113584.0 48-49 108045.0 50-51 99620.0 52-53 96117.0 54-55 102982.0 56-57 105741.0 58-59 105261.0 60-61 103524.0 62-63 99176.0 64-65 102178.0 66-67 108369.0 68-69 111279.0 70-71 109949.0 72-73 104992.0 74-75 106066.0 76-77 103556.0 78-79 111189.0 80-81 112618.0 82-83 108717.0 84-85 109016.0 86-87 114308.0 88-89 122659.0 90-91 136517.0 92-93 133281.0 94-95 150232.0 96-97 228636.0 98-99 946093.0 100-101 6703933.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.98803823776394 #Duplication Level Percentage of deduplicated Percentage of total 1 89.6216751278553 76.16770352698624 2 7.204588152199685 12.24607626732976 3 1.818375484994785 4.63620495748048 4 0.6288542953461875 2.137803715954555 5 0.29631963549309037 1.259181225594352 6 0.14970840789394776 0.7634054336763356 7 0.08319530510700536 0.49494240401456263 8 0.053795776091509366 0.3657597980396309 9 0.030684320441895438 0.23470201791140505 >10 0.10998398693793181 1.4550820911351232 >50 0.0023425348217808416 0.12885103957300262 >100 4.264684671646822E-4 0.06796588496489328 >500 3.366972280525239E-5 0.02435151886792799 >1k 1.68346269217132E-5 0.01797011847175561 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6661118784082354E-5 0.0 0.0 0.0 3 0.0 2.6661118784082354E-5 0.0 0.0 0.0 4 0.0 5.332223756816471E-5 0.0 0.0 0.0 5 0.0 7.109631675755294E-5 0.0 0.0 0.0 6 0.0 7.109631675755294E-5 0.0 0.0 0.0 7 0.0 7.998335635224705E-5 0.0 0.0 0.0 8 0.0 8.887039594694118E-5 0.0 0.0 0.0 9 0.0 1.3330559392041175E-4 0.0 1.7774079189388235E-5 0.0 10-11 0.0 1.3330559392041175E-4 0.0 2.6661118784082354E-5 0.0 12-13 0.0 1.3330559392041175E-4 0.0 2.6661118784082354E-5 0.0 14-15 0.0 2.266195096647E-4 0.0 3.9991678176123525E-5 4.443519797347059E-6 16-17 0.0 2.4439358885408824E-4 0.0 5.332223756816471E-5 2.2217598986735294E-5 18-19 0.0 2.7105470763817056E-4 0.0 6.220927716285883E-5 3.554815837877647E-5 20-21 0.0 2.888287868275588E-4 0.0 6.220927716285883E-5 3.554815837877647E-5 22-23 0.0 3.2882046500368233E-4 0.0 9.77574355416353E-5 6.220927716285883E-5 24-25 0.0 3.599251035851117E-4 0.0 1.732972720965353E-4 7.998335635224705E-5 26-27 0.0 3.9102974216654115E-4 0.0 2.9771582642225294E-4 7.998335635224705E-5 28-29 0.0 4.0436030155858234E-4 0.0 0.0012308549838651352 7.998335635224705E-5 30-31 0.0 4.976742173028706E-4 0.0 0.002883844348478241 7.998335635224705E-5 32-33 0.0 5.110047766949117E-4 0.0 0.005932098929458323 7.998335635224705E-5 34-35 0.0 5.909881330471588E-4 0.0 0.010193434415114153 1.0664447513632941E-4 36-37 0.0 6.576409300073647E-4 0.0 0.015930018473489203 1.0664447513632941E-4 38-39 0.0 6.976326081834883E-4 0.0 0.02579018890380233 1.0664447513632941E-4 40-41 1.7774079189388235E-5 7.642854051436941E-4 0.0 0.0345972451421442 1.0664447513632941E-4 42-43 1.7774079189388235E-5 8.042770833198176E-4 0.0 0.04148470082803214 1.0664447513632941E-4 44-45 1.7774079189388235E-5 8.975909990641059E-4 0.0 0.049794082849071136 1.0664447513632941E-4 46-47 2.6661118784082354E-5 9.731308356190058E-4 0.0 0.059258780017420375 1.1553151473102353E-4 48-49 2.6661118784082354E-5 9.820178752137E-4 0.0 0.06814137609231714 1.1997503452837059E-4 50-51 2.6661118784082354E-5 0.0011108799493367647 0.0 0.07666404706362881 1.2886207412306472E-4 52-53 2.6661118784082354E-5 0.001128654028526153 0.0 0.08471570493642167 1.466361533124529E-4 54-55 2.6661118784082354E-5 0.001128654028526153 0.0 0.0921497135573833 1.599667127044941E-4 56-57 2.6661118784082354E-5 0.001128654028526153 0.0 0.0995615045793582 1.599667127044941E-4 58-59 3.554815837877647E-5 0.001128654028526153 0.0 0.10640896858707001 1.599667127044941E-4 60-61 3.554815837877647E-5 0.0011553151473102353 0.0 0.11290983805058877 1.599667127044941E-4 62-63 3.554815837877647E-5 0.0011642021869049293 0.0 0.1186641961881532 1.7774079189388235E-4 64-65 4.443519797347059E-5 0.0013330559392041176 0.0 0.12472960071153194 1.7774079189388235E-4 66-67 5.332223756816471E-5 0.0013419429787988116 0.0 0.13120825257606394 1.9995839088061767E-4 68-69 5.332223756816471E-5 0.0013774911371775883 0.0 0.1376913479603933 2.1773247007000586E-4 70-71 5.332223756816471E-5 0.0013774911371775883 0.0 0.14356568113248613 2.2217598986735293E-4 72-73 5.332223756816471E-5 0.0013774911371775883 0.0 0.14839134363240503 2.2217598986735293E-4 74-75 5.332223756816471E-5 0.0014263698549484057 0.0 0.15251493000434307 2.2217598986735293E-4 76-77 5.332223756816471E-5 0.0014708050529218765 0.0 0.1562252690351279 2.2217598986735293E-4 78-79 5.332223756816471E-5 0.0014752485727192236 0.0 0.15956679592273287 2.2217598986735293E-4 80-81 5.332223756816471E-5 0.0014752485727192236 0.0 0.16119756768835924 2.266195096647E-4 82-83 5.332223756816471E-5 0.0014796920925165707 0.0 0.16179299934120375 2.488371086514353E-4 84-85 5.332223756816471E-5 0.0014974661717059587 0.0 0.1624684143504005 2.488371086514353E-4 86-87 5.332223756816471E-5 0.0015419013696794295 0.0 0.1627705736966201 2.488371086514353E-4 88-89 5.332223756816471E-5 0.0016218847260316763 0.0 0.1628816616915538 2.5772414824612943E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12250 0.0 44.937027 1 GTATCAA 21295 0.0 34.69724 1 TCAACGC 24880 0.0 28.818214 4 ATCAACG 25015 0.0 28.696314 3 CAACGCA 25530 0.0 28.0679 5 AACGCAG 26325 0.0 27.316355 6 TATCAAC 26675 0.0 27.132078 2 ACGCAGA 31025 0.0 23.05619 7 CGCAGAG 31595 0.0 22.693478 8 GTACATG 31160 0.0 21.687986 1 TACATGG 30200 0.0 21.50042 2 ACATGGG 30265 0.0 20.8561 3 GCAGAGT 38375 0.0 18.6838 9 GTGGTAT 6890 0.0 18.554754 1 CATGGGG 21665 0.0 18.109898 4 GAGTACT 21715 0.0 17.661362 12-13 AGAGTAC 33435 0.0 17.230957 10-11 CAGAGTA 36675 0.0 16.975729 10-11 TGGTATC 6875 0.0 16.515724 2 GTACTTT 24605 0.0 15.638831 14-15 >>END_MODULE