##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138787_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17879274 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19224757112621 33.0 31.0 34.0 30.0 34.0 2 32.315923621954674 34.0 31.0 34.0 30.0 34.0 3 32.369755953177965 34.0 31.0 34.0 30.0 34.0 4 36.00121179417017 37.0 35.0 37.0 35.0 37.0 5 35.88699250316316 37.0 35.0 37.0 35.0 37.0 6 35.913796276068034 37.0 35.0 37.0 35.0 37.0 7 35.834652905928955 37.0 35.0 37.0 35.0 37.0 8 35.799568763250676 37.0 35.0 37.0 33.0 37.0 9 37.438594318762604 39.0 37.0 39.0 34.0 39.0 10-11 37.33639626530697 39.0 37.0 39.0 34.0 39.0 12-13 37.29902545259947 39.0 37.0 39.0 34.0 39.0 14-15 38.4832228366767 40.0 38.0 41.0 34.0 41.0 16-17 38.50968903994648 40.0 38.0 41.0 34.0 41.0 18-19 38.5270311870605 40.0 38.0 41.0 34.0 41.0 20-21 38.50469992668204 40.0 38.0 41.0 34.0 41.0 22-23 38.4069369528826 40.0 38.0 41.0 34.0 41.0 24-25 38.32070784277 40.0 38.0 41.0 34.0 41.0 26-27 38.16225043769485 40.0 38.0 41.0 33.0 41.0 28-29 38.03545685967507 40.0 37.0 41.0 33.0 41.0 30-31 37.88197193328885 40.0 37.0 41.0 33.0 41.0 32-33 38.05599311176671 40.0 37.0 41.0 33.0 41.0 34-35 38.038541955128736 40.0 37.0 41.0 33.0 41.0 36-37 37.95987200802103 40.0 37.0 41.0 33.0 41.0 38-39 37.86140988438698 40.0 37.0 41.0 33.0 41.0 40-41 37.81817831110682 40.0 37.0 41.0 33.0 41.0 42-43 37.7188924787953 40.0 37.0 41.0 33.0 41.0 44-45 37.764338022644935 40.0 37.0 41.0 33.0 41.0 46-47 37.90374741106511 40.0 37.0 41.0 33.0 41.0 48-49 37.83947964452324 40.0 37.0 41.0 33.0 41.0 50-51 37.73225999890998 40.0 37.0 41.0 32.5 41.0 52-53 37.59611239404137 40.0 36.5 41.0 32.0 41.0 54-55 37.5068236040555 39.5 36.0 41.0 32.0 41.0 56-57 37.35686345328861 39.0 36.0 41.0 32.0 41.0 58-59 37.22610887637093 39.0 36.0 41.0 31.0 41.0 60-61 37.01701647576108 39.0 35.0 40.0 31.0 41.0 62-63 36.77109215343427 38.5 35.0 40.0 31.0 41.0 64-65 36.570738923087426 38.0 35.0 40.0 31.0 41.0 66-67 36.29700105219442 38.0 35.0 40.0 30.5 41.0 68-69 35.99224451085226 37.0 34.0 40.0 30.0 41.0 70-71 35.70192815670299 37.0 34.0 39.0 30.0 41.0 72-73 35.39411687231705 36.0 34.0 39.0 29.0 40.5 74-75 35.006662981933886 36.0 34.0 39.0 29.0 40.0 76-77 33.92187781426671 35.0 32.5 37.0 28.0 39.0 78-79 34.25684283771125 35.0 33.0 37.0 29.0 39.0 80-81 34.10031532580256 35.0 33.0 37.0 29.0 39.0 82-83 33.8331534087811 35.0 33.0 36.0 29.0 38.5 84-85 33.58284085345156 35.0 33.0 36.0 29.0 37.0 86-87 33.340887147313694 35.0 33.0 35.5 29.0 37.0 88-89 33.08223061362803 34.5 32.0 35.0 29.0 36.5 90-91 32.90538515255794 34.0 32.0 35.0 28.0 36.0 92-93 32.793148492327845 34.0 32.0 35.0 28.5 36.0 94-95 32.708152372698066 34.0 32.0 35.0 28.5 36.0 96-97 32.62311769951978 34.0 32.0 35.0 28.0 35.0 98-99 32.73446963316669 34.0 32.0 35.0 29.0 35.0 100-101 31.837081692994662 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 2.0 18 5.0 19 8.0 20 89.0 21 506.0 22 2381.0 23 8691.0 24 22877.0 25 49292.0 26 90605.0 27 146164.0 28 216017.0 29 294680.0 30 387612.0 31 493738.0 32 628839.0 33 811074.0 34 1088891.0 35 1492550.0 36 2236854.0 37 3564428.0 38 4174820.0 39 2090206.0 40 78943.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.295760778653545 22.631769052815006 15.097262897811175 23.975207270720276 2 13.547232420686239 23.193514600940297 41.79209929115936 21.4671536872141 3 16.458380804500226 28.852664822967643 31.953803045917862 22.735151326614268 4 11.421527337322322 20.03452052158875 40.63543599776724 27.908516143321688 5 11.877434173222023 39.25222578948116 36.7038169446925 12.16652309260432 6 27.346306119588526 40.64978812898107 19.768940282474556 12.234965468955842 7 24.267232550941387 33.639167899099256 25.34651015471881 16.747089395240543 8 23.193111756103743 37.96806850211032 22.2998484166639 16.538971325122038 9 25.191095566855793 16.329494139415278 22.178059355206482 36.30135093852245 10-11 22.960345034144 27.669624616748976 30.487823498873613 18.882206850233406 12-13 23.98210632042442 25.443684122744582 30.329122983405256 20.245086573425745 14-15 21.211898760542514 26.6448095151962 27.868502938094693 24.2747887861666 16-17 20.62483856457747 29.666240199352682 28.508919513346243 21.20000172272361 18-19 20.680814556564208 28.96879929240975 30.080337713936263 20.270048437089784 20-21 21.675609002490848 28.160789992220714 29.708203576054302 20.455397429234136 22-23 21.308683953173524 28.217344188525356 29.573259610437574 20.90071224786354 24-25 21.012848412810293 28.320775382553965 29.699961804821097 20.966414399814646 26-27 21.021234906065235 28.44387493082352 29.580680950144405 20.95420921296684 28-29 20.95385461996006 28.491641087711788 29.60607872836781 20.948425563960342 30-31 21.20011698753946 28.386271727558988 29.540284499969665 20.87332678493189 32-33 21.049769677365575 28.476457696779278 29.509854373346865 20.963918252508275 34-35 21.04518360907409 28.53535785298984 29.603227981861846 20.816230556074228 36-37 21.090093375816156 28.554830915626784 29.44386205444044 20.911213654116622 38-39 20.95031125385849 28.550855474595128 29.526836784296883 20.9719964872495 40-41 21.09984354502627 28.435980555026013 29.447942063590265 21.016233836357443 42-43 21.05710525874837 28.574912797922973 29.242743516512775 21.125238426815883 44-45 21.114627972354537 28.695968016718666 29.03324805206934 21.156155958857457 46-47 21.203398181598548 28.64141168601721 28.804349572475125 21.35084055990912 48-49 21.175943013704437 28.735155152021925 28.746394714027666 21.342507120245973 50-51 21.188051412213355 28.82749157712496 28.60350991395445 21.38094709670724 52-53 21.227405006693857 28.74997753946224 28.595695182565407 21.4269222712785 54-55 21.22974290698069 28.736528150075745 28.561452661489156 21.472276281454405 56-57 21.310452056627096 28.739217888853542 28.537411071394896 21.412918983124463 58-59 21.220779217480125 28.79107446922284 28.583064971539716 21.405081341757317 60-61 21.222626483421873 28.65139197369783 28.612214064920433 21.513767477959867 62-63 21.400278975434755 28.698351990683076 28.57699116797981 21.324377865902363 64-65 21.056384832559765 28.691615394059973 28.602468248087536 21.649531525292726 66-67 21.212372903071362 28.705280866994254 28.432092010359987 21.650254219574393 68-69 21.177938043073873 28.95730892237825 28.45329923695474 21.411453797593133 70-71 21.189378780718393 28.74436811061372 28.523374355250148 21.542878753417742 72-73 21.22688121763647 28.725044719254388 28.27099383960279 21.77708022350635 74-75 21.183179771971897 28.761320767947048 28.232512235825375 21.822987224255684 76-77 21.273203490978197 28.492225708297266 28.466070667727983 21.76850013299655 78-79 21.28929296680298 28.437518195674137 28.417486955447973 21.855701882074907 80-81 21.549582181761924 28.44122795605158 28.13903202950836 21.87015783267814 82-83 21.57146408780448 28.686052503285797 28.236897173263927 21.505586235645797 84-85 21.37603904510696 28.447954729697027 28.154091750556574 22.021914474639434 86-87 21.24776189445915 28.718516700738938 28.240516363909045 21.793205040892868 88-89 21.626800836098177 28.33753365903903 28.215218953885145 21.82044655097765 90-91 21.68253273346375 28.619870765746285 28.282094439570127 21.415502061219836 92-93 21.340192659886988 28.525485037602266 28.327265273333897 21.807057029176853 94-95 21.4920035114857 28.26442324898521 28.435250704745634 21.808322534783457 96-97 21.393769977502348 28.63164503066991 28.557110404146606 21.41747458768113 98-99 21.562250212609403 29.012711075523246 28.73237491546356 20.692663796403792 100-101 23.887383366540494 36.72709934864551 30.115616211545156 9.269901073268844 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3379.0 1 3333.0 2 5346.5 3 7902.5 4 10822.5 5 16928.5 6 21604.0 7 24874.0 8 26776.0 9 25912.5 10 23918.0 11 22400.5 12 25328.5 13 34092.0 14 53711.5 15 80113.5 16 100012.5 17 108927.5 18 109177.5 19 104813.0 20 99360.5 21 96763.0 22 101218.0 23 116202.0 24 142237.5 25 177803.0 26 222261.0 27 270556.5 28 320989.5 29 372682.0 30 419586.0 31 464033.0 32 508776.0 33 551238.5 34 591647.0 35 629740.0 36 666338.0 37 697915.0 38 719899.0 39 735583.5 40 749111.0 41 757454.0 42 758135.0 43 758337.5 44 757416.5 45 751997.0 46 741617.0 47 728271.5 48 713722.5 49 693272.5 50 668949.5 51 635014.5 52 589009.5 53 544201.5 54 500987.0 55 454528.0 56 407981.0 57 362038.0 58 315301.0 59 268284.0 60 222487.0 61 178871.0 62 139174.5 63 105972.5 64 78842.0 65 58460.5 66 43466.5 67 32293.0 68 23829.5 69 16741.5 70 11619.5 71 8214.0 72 5807.0 73 4125.5 74 2957.5 75 2112.5 76 1486.0 77 1000.0 78 693.5 79 506.0 80 367.5 81 267.5 82 207.5 83 153.0 84 110.0 85 81.5 86 61.0 87 50.5 88 38.0 89 26.0 90 19.5 91 15.0 92 12.0 93 6.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012304750181690823 3 0.0 4 3.020256862778656E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0034005855047581908 18-19 0.0 20-21 0.00213383198441872 22-23 0.0 24-25 3.608848089819921E-4 26-27 0.0035318149924482966 28-29 0.0 30-31 9.812499672332601E-5 32-33 7.984023182454693E-4 34-35 7.758860484656798E-4 36-37 0.009789283613644123 38-39 0.011405960755090611 40-41 0.02476390899254797 42-43 0.0020130311769658033 44-45 0.001311052534433575 46-47 0.0019369010018360098 48-49 0.0018215406241344858 50-51 8.222185875423592E-5 52-53 1.4460873261368438E-4 54-55 0.006362022700740765 56-57 0.0037767888290937443 58-59 0.003715054435708316 60-61 0.0016984908732664479 62-63 4.565702893198495E-4 64-65 7.667526358022955E-4 66-67 6.105705625946489E-4 68-69 1.0089542333987595E-5 70-71 0.0 72-73 9.338118646469447E-5 74-75 2.3139329687276166E-4 76-77 0.0016064531079181077 78-79 0.0019540532851583486 80-81 0.011210448240305718 82-83 0.009989744135631248 84-85 0.01298637715804005 86-87 0.0065225803819681455 88-89 0.08848975709270478 90-91 3.9451315880708785E-4 92-93 4.4791726007220344E-5 94-95 2.3775801698134496E-4 96-97 0.01538045877219626 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 383.0 20-21 1422.0 22-23 3061.0 24-25 6329.0 26-27 7980.0 28-29 15265.0 30-31 45780.0 32-33 59023.0 34-35 81995.0 36-37 129715.0 38-39 147595.0 40-41 151869.0 42-43 171682.0 44-45 200484.0 46-47 201646.0 48-49 190613.0 50-51 175152.0 52-53 152720.0 54-55 166616.0 56-57 176489.0 58-59 112009.0 60-61 195252.0 62-63 181408.0 64-65 186487.0 66-67 200701.0 68-69 204918.0 70-71 206643.0 72-73 196334.0 74-75 193905.0 76-77 194511.0 78-79 213623.0 80-81 220696.0 82-83 210356.0 84-85 206534.0 86-87 220147.0 88-89 238543.0 90-91 265006.0 92-93 279920.0 94-95 348012.0 96-97 447668.0 98-99 1539613.0 100-101 9731169.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.08114566057418 #Duplication Level Percentage of deduplicated Percentage of total 1 89.14204714700502 74.951654506491 2 7.415867699273732 12.470693044443633 3 1.9141579150510426 4.828337714182431 4 0.7115500547653696 2.393117751980663 5 0.33041409092942897 1.389079765387176 6 0.17158768302072125 0.8656373381775417 7 0.09521821802792937 0.5604239801682647 8 0.05984324931732513 0.4025351170121656 9 0.037730202955545175 0.28551588214573986 >10 0.11733317220727084 1.513526961981489 >50 0.003145088765039798 0.17917490631155042 >100 0.0010708610177186174 0.13946845314060347 >500 3.4617663833218705E-5 0.020834578577793764 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.593068264404919E-6 0.0 0.0 0.0 5.593068264404919E-6 2 5.593068264404919E-6 2.2372273057619676E-5 0.0 5.593068264404919E-6 5.593068264404919E-6 3 5.593068264404919E-6 2.2372273057619676E-5 0.0 1.677920479321476E-5 5.593068264404919E-6 4 5.593068264404919E-6 3.355840958642952E-5 0.0 3.355840958642952E-5 5.593068264404919E-6 5 5.593068264404919E-6 3.355840958642952E-5 0.0 3.355840958642952E-5 5.593068264404919E-6 6 1.1186136528809838E-5 3.355840958642952E-5 0.0 4.474454611523935E-5 1.677920479321476E-5 7 1.1186136528809838E-5 3.355840958642952E-5 0.0 5.593068264404919E-5 2.2372273057619676E-5 8 1.1186136528809838E-5 3.355840958642952E-5 0.0 6.152375090845411E-5 2.2372273057619676E-5 9 1.1186136528809838E-5 4.474454611523935E-5 0.0 8.94890922304787E-5 5.0337614379644276E-5 10-11 3.355840958642952E-5 4.474454611523935E-5 0.0 1.1186136528809839E-4 5.0337614379644276E-5 12-13 5.0337614379644276E-5 4.474454611523935E-5 0.0 1.3143710421351562E-4 5.0337614379644276E-5 14-15 5.313414851184674E-5 8.109948983387133E-5 0.0 1.4262324074232547E-4 6.991335330506148E-5 16-17 6.152375090845411E-5 8.94890922304787E-5 0.0 1.649955137999451E-4 9.508216049488363E-5 18-19 6.711681917285903E-5 1.0906483115589592E-4 0.0 1.8457125272536233E-4 9.508216049488363E-5 20-21 6.711681917285903E-5 1.3143710421351562E-4 0.0 2.293157988406017E-4 9.508216049488363E-5 22-23 6.711681917285903E-5 1.538093772711353E-4 0.0 4.893934731354304E-4 1.1465789942030085E-4 24-25 9.228562636268117E-5 1.789781844609574E-4 0.0 0.0013339467810605733 1.3143710421351562E-4 26-27 1.0626829702369346E-4 1.9016432098976725E-4 0.0 0.0038704032389682043 1.39826706610123E-4 28-29 1.0906483115589592E-4 1.929608551219697E-4 0.0 0.020176993763840745 1.4541977487452792E-4 30-31 1.2304750181690822E-4 2.1253659404738692E-4 0.0 0.031069494208769324 1.4541977487452792E-4 32-33 1.3423363834571807E-4 2.1253659404738692E-4 0.0 0.03937799711554284 1.5660591140333774E-4 34-35 1.4541977487452792E-4 2.4609500363381644E-4 0.0 0.050085926307746054 1.6779204793214759E-4 36-37 1.5660591140333774E-4 2.8244994735244843E-4 0.0 0.06460553152214121 1.7058858206435006E-4 38-39 1.6219897966774266E-4 2.880430156168534E-4 0.0 0.09167318538772884 1.733851161965525E-4 40-41 1.6779204793214759E-4 3.243979593354853E-4 0.0 0.14051465400664478 1.789781844609574E-4 42-43 1.6779204793214759E-4 3.243979593354853E-4 0.0 0.16228846875997313 1.873677868575648E-4 44-45 1.789781844609574E-4 3.4117716412870007E-4 0.0 0.19336075950287468 1.9855392338637465E-4 46-47 1.929608551219697E-4 3.6075290305411726E-4 0.0 0.22982756458679476 2.0974005991518448E-4 48-49 2.013504575185771E-4 3.663459713185222E-4 0.0 0.2600497089535067 2.1253659404738692E-4 50-51 2.0414699165077955E-4 4.1109051743376155E-4 0.0 0.29292017114341445 2.1253659404738692E-4 52-53 2.1812966231179185E-4 4.1388705156596405E-4 0.0 0.33006373748732754 2.572811401626263E-4 54-55 2.2372273057619677E-4 4.166835856981665E-4 0.0 0.4149133795924823 3.020256862778656E-4 56-57 2.2372273057619677E-4 4.2507318809477385E-4 0.0 0.49236059584969727 3.020256862778656E-4 58-59 2.2372273057619677E-4 4.3346279049138125E-4 0.0 0.5586552339876887 3.1321182280667553E-4 60-61 2.4050193536941154E-4 4.362593246235837E-4 0.0 1.0251590752510422 3.188048910710804E-4 62-63 2.4050193536941154E-4 4.446489270201911E-4 0.0 1.0365353761008418 3.6914250545072466E-4 64-65 2.4050193536941154E-4 5.397310875150747E-4 0.0 1.0479815903039464 3.803286419795345E-4 66-67 2.4050193536941154E-4 5.509172240438845E-4 0.0 1.0568661792419536 3.971078467727493E-4 68-69 2.4609500363381644E-4 5.565102923082894E-4 0.0 1.065781530055415 4.027009150371542E-4 70-71 2.4609500363381644E-4 5.59306826440492E-4 0.0 1.0740424918819411 4.1948011983036895E-4 72-73 2.4609500363381644E-4 5.59306826440492E-4 0.0 1.0809135762447624 4.5303852941679844E-4 74-75 2.4609500363381644E-4 5.788825653659092E-4 0.0 1.0867974840589165 4.5303852941679844E-4 76-77 2.4609500363381644E-4 6.096444408201362E-4 0.0 1.0919542929986976 4.5303852941679844E-4 78-79 2.516880718982214E-4 6.20830577348946E-4 0.0 1.096610522328815 4.5303852941679844E-4 80-81 2.516880718982214E-4 6.32016713877756E-4 0.0 1.099331550039448 4.5583506354900094E-4 82-83 2.572811401626263E-4 6.376097821421609E-4 0.0 1.1009954878481083 4.921900072676329E-4 84-85 2.628742084270312E-4 6.487959186709706E-4 0.0 1.102438499460325 4.921900072676329E-4 86-87 2.628742084270312E-4 6.655751234641854E-4 0.0 1.1026678152591654 4.921900072676329E-4 88-89 2.628742084270312E-4 6.87947396521805E-4 0.0 1.102718152873545 4.921900072676329E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22065 0.0 48.333748 1 GTATCAA 39655 0.0 34.510918 1 ATCAACG 49425 0.0 26.992792 3 TCAACGC 49570 0.0 26.897116 4 CAACGCA 50510 0.0 26.388058 5 TATCAAC 52275 0.0 25.727665 2 AACGCAG 52120 0.0 25.668316 6 ACCGAGG 19850 0.0 24.410236 92-93 GACCGAG 19775 0.0 24.180466 90-91 GAGACCG 20010 0.0 23.637638 88-89 AGACCGA 19775 0.0 23.600134 90-91 CGAGACC 19935 0.0 23.416216 88-89 ACGAGAC 21275 0.0 22.499855 86-87 ACGCAGA 60225 0.0 22.151995 7 CGCAGAG 60840 0.0 21.94169 8 GCCCACG 21340 0.0 21.671926 82-83 CCCACGA 21285 0.0 21.595316 84-85 CACGAGA 21860 0.0 21.331291 86-87 CCACGAG 22300 0.0 21.08959 84-85 GTACATG 63790 0.0 20.810658 1 >>END_MODULE