##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138786_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16078147 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.23920138309471 33.0 31.0 34.0 30.0 34.0 2 32.36592357315803 34.0 31.0 34.0 31.0 34.0 3 32.422393078008305 34.0 31.0 34.0 31.0 34.0 4 36.040686840342985 37.0 35.0 37.0 35.0 37.0 5 35.92249511091048 37.0 35.0 37.0 35.0 37.0 6 35.94623708814206 37.0 35.0 37.0 35.0 37.0 7 35.86706938305764 37.0 35.0 37.0 35.0 37.0 8 35.83179492014845 37.0 35.0 37.0 35.0 37.0 9 37.4848095990166 39.0 37.0 39.0 35.0 39.0 10-11 37.38156240890197 39.0 37.0 39.0 34.0 39.0 12-13 37.34418223070109 39.0 37.0 39.0 34.0 39.0 14-15 38.55579657282646 40.0 38.0 41.0 34.0 41.0 16-17 38.57555743208468 40.0 38.0 41.0 34.0 41.0 18-19 38.57725035105103 40.0 38.0 41.0 34.0 41.0 20-21 38.54805018518117 40.0 38.0 41.0 34.0 41.0 22-23 38.448819552673 40.0 38.0 41.0 34.0 41.0 24-25 38.36225176310161 40.0 38.0 41.0 34.0 41.0 26-27 38.204393251117565 40.0 38.0 41.0 33.5 41.0 28-29 38.07692119171439 40.0 37.5 41.0 33.0 41.0 30-31 37.92546782769067 40.0 37.0 41.0 33.0 41.0 32-33 38.11232676618668 40.0 37.5 41.0 33.0 41.0 34-35 38.09772355976459 40.0 37.5 41.0 33.0 41.0 36-37 38.017968007125475 40.0 37.0 41.0 33.0 41.0 38-39 37.919668635056084 40.0 37.0 41.0 33.0 41.0 40-41 37.87159606799021 40.0 37.0 41.0 33.0 41.0 42-43 37.764846241833865 40.0 37.0 41.0 33.0 41.0 44-45 37.80422509227359 40.0 37.0 41.0 33.0 41.0 46-47 37.93879797845402 40.0 37.0 41.0 33.0 41.0 48-49 37.86385725804482 40.0 37.0 41.0 33.0 41.0 50-51 37.74866117869382 40.0 37.0 41.0 32.5 41.0 52-53 37.59683172872049 40.0 36.5 41.0 32.0 41.0 54-55 37.499836311967215 39.0 36.0 41.0 32.0 41.0 56-57 37.33961163913927 39.0 36.0 41.0 32.0 41.0 58-59 37.20074291293186 39.0 35.5 41.0 31.0 41.0 60-61 36.979146517753705 39.0 35.0 40.0 31.0 41.0 62-63 36.72084046900315 38.0 35.0 40.0 31.0 41.0 64-65 36.51599899223373 38.0 35.0 40.0 31.0 41.0 66-67 36.22754982848868 37.5 34.5 40.0 30.5 41.0 68-69 35.90547181949589 37.0 34.0 40.0 30.0 41.0 70-71 35.5976738829733 36.5 34.0 39.0 30.0 41.0 72-73 35.28759993613869 36.0 34.0 39.0 29.5 40.0 74-75 34.881338606913275 35.5 34.0 38.5 29.0 40.0 76-77 33.79460990115655 35.0 32.5 37.0 28.0 39.0 78-79 34.089526927497616 35.0 33.0 37.0 29.0 39.0 80-81 33.923194799137725 35.0 33.0 36.5 29.0 39.0 82-83 33.67318789751532 35.0 33.0 36.0 29.0 37.5 84-85 33.456198167285265 35.0 33.0 36.0 29.0 37.0 86-87 33.23929377961352 35.0 33.0 35.0 29.0 37.0 88-89 32.99093072195339 34.5 32.0 35.0 28.0 36.0 90-91 32.84818509462656 34.0 32.0 35.0 28.0 36.0 92-93 32.760145946453974 34.0 32.0 35.0 28.0 36.0 94-95 32.69138858067264 34.0 32.0 35.0 28.0 35.0 96-97 32.60003757946693 34.0 32.0 35.0 27.5 35.0 98-99 32.711267533162896 34.0 32.0 35.0 29.0 35.0 100-101 31.77906607999717 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 12.0 20 73.0 21 447.0 22 2143.0 23 7656.0 24 20603.0 25 45195.0 26 82403.0 27 134343.0 28 196861.0 29 270184.0 30 352519.0 31 448034.0 32 569107.0 33 733904.0 34 988829.0 35 1366735.0 36 2077404.0 37 3327682.0 38 3753416.0 39 1629774.0 40 70822.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.71076063678234 21.938523139513528 14.863223977240661 24.48749224646348 2 13.920077263687212 22.664891894030127 41.25298981311522 22.16204102916744 3 16.746855219074686 27.95591432271393 31.642545624194128 23.654684834017253 4 11.941098984811196 19.443636754682288 39.90562189184998 28.709642368656528 5 12.417450841816535 38.63115569225732 36.49294287457379 12.45845059135235 6 28.541920906681597 39.842532849090134 19.173565212458872 12.441981031769394 7 24.936045179833226 33.182231758423406 24.863860244591617 17.01786281715175 8 23.590199791058012 37.57197891025626 21.922974084016026 16.914847214669702 9 25.325449506090468 16.275749935611362 21.671595613599003 36.72720494469916 10-11 23.485218787961077 27.124381932818505 30.175392724049605 19.215006555170817 12-13 24.363230414549637 24.814899378641083 29.936105199187445 20.88576500762184 14-15 21.647634519077354 26.128639077625053 27.247172824082277 24.976553579215317 16-17 21.302163703656042 29.10163892987847 27.896894028519004 21.699303337946482 18-19 21.36526989086491 28.514725608616466 29.29758945480471 20.822415045713914 20-21 22.174012860685938 27.78040088288929 28.980210750444694 21.06537550598008 22-23 21.87734106306494 27.72994973862205 28.855137389124234 21.537571809188776 24-25 21.671884675852667 27.842373034535616 28.918777786540566 21.56696450307115 26-27 21.663156496448 27.96917822800582 28.801839904367004 21.56582537117918 28-29 21.65350843756026 28.0359035416975 28.79641318359137 21.514174837150875 30-31 21.868157266186216 27.891091383048654 28.726078359188868 21.51467299157626 32-33 21.667465594571482 28.084599994085412 28.660293875006243 21.58764053633686 34-35 21.78089031153922 28.06425877096988 28.68588624689867 21.468964670592232 36-37 21.80194232787111 28.01161304823917 28.657786279623902 21.528658344265818 38-39 21.649250016237538 28.08977164657392 28.700226868397728 21.56075146879082 40-41 21.75759887839928 27.87775164815282 28.676976726338268 21.68767274710964 42-43 21.779499681420383 28.029699879090252 28.48333975895493 21.70746068053443 44-45 21.689600758096354 28.055098287224727 28.382757526808007 21.872543427870912 46-47 21.76278229361884 27.992252768890523 28.208933794728473 22.036031142762162 48-49 21.71892941681744 28.21885757142158 28.196618291208438 21.865594720552547 50-51 21.69437935362602 28.289837997015095 28.08561830614768 21.93016434321121 52-53 21.769118115129796 28.1589773055888 27.829302355791295 22.242602223490103 54-55 21.69505547013014 27.868779991879787 28.078304721817894 22.357859816172184 56-57 21.790457601657714 27.568824913723834 28.313663214177954 22.327054270440502 58-59 21.594891133728915 27.40277576976901 28.41842745105035 22.583905645451726 60-61 21.663817182739866 27.19212190346138 28.720785821965904 22.42327509183285 62-63 21.391472723017298 27.728500772085724 28.71015458554995 22.169871919347028 64-65 20.987631287219376 27.9269885341363 28.534349627455757 22.551030551188568 66-67 21.11668340252097 28.56096291951188 27.9558711918111 22.36648248615606 68-69 21.210171395719794 28.947457382369475 27.4778413372779 22.36452988463283 70-71 21.236075692360597 28.47716805559035 27.428922836017726 22.857833416031323 72-73 21.120866936960024 28.09934560729112 27.383976400218213 23.395811055530643 74-75 21.53003171402022 27.75409865653688 27.466110143826345 23.249759485616554 76-77 21.97208467860271 27.579858484391977 27.352966143378637 23.095090693626673 78-79 22.206836324693 27.46492177351237 26.652124709219066 23.676117192575568 80-81 22.11340995424583 27.906486177466867 26.568282530001973 23.41182133828533 82-83 21.992176454507163 28.053621244813538 26.666021353226192 23.288180947453103 84-85 22.022431270100597 28.0711616647847 26.618503752031565 23.28790331308314 86-87 22.289093361919615 28.42390733591231 26.590909154996556 22.696090147171518 88-89 22.52213313612535 28.07618494346383 26.905849921156012 22.495831999254815 90-91 22.200798372372894 28.10393148118102 27.245882949518847 22.44938719692724 92-93 21.9371247310018 27.644800784293942 27.068118312470048 23.349956172234208 94-95 21.725892943626 27.605671807990028 27.815508574601395 22.852926673782573 96-97 21.23912512315907 27.9738469104034 28.131743324600304 22.655284641837227 98-99 21.46294027716783 28.063046978149885 28.4961576797112 21.977855064971084 100-101 24.398127660236533 36.06116045566826 29.936883941509585 9.603827942585628 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4753.0 1 4248.0 2 5239.5 3 7131.5 4 9400.0 5 14148.0 6 17891.0 7 20402.0 8 21828.0 9 21327.5 10 19873.0 11 18441.0 12 20248.0 13 26310.5 14 39931.5 15 58499.5 16 72498.0 17 79311.5 18 81078.0 19 79112.0 20 75601.0 21 73779.0 22 75955.5 23 85728.5 24 104228.5 25 130512.0 26 163743.0 27 198779.0 28 234359.0 29 270842.0 30 303510.5 31 337095.0 32 372514.0 33 406932.0 34 440766.0 35 472564.0 36 509038.5 37 543823.0 38 570691.5 39 593280.0 40 614480.5 41 634034.5 42 647807.0 43 659142.0 44 668617.0 45 673998.5 46 674864.5 47 672853.0 48 667475.0 49 654636.5 50 637529.0 51 614567.0 52 581546.5 53 545535.0 54 506872.0 55 464882.5 56 422355.0 57 377803.5 58 330842.5 59 283264.5 60 236730.0 61 191378.0 62 151206.5 63 117086.0 64 86579.0 65 63851.0 66 48144.5 67 36468.0 68 27907.5 69 20313.5 70 14456.5 71 10596.0 72 7645.5 73 5318.5 74 3660.0 75 2582.5 76 1826.5 77 1249.0 78 858.0 79 619.5 80 465.0 81 344.0 82 256.5 83 179.5 84 128.5 85 97.0 86 72.0 87 52.5 88 34.0 89 18.5 90 10.0 91 7.0 92 7.5 93 6.0 94 3.5 95 3.0 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013620972615812008 3 0.0 4 3.358595987460495E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0034363412649480066 18-19 0.0 20-21 0.0020463325770610596 22-23 0.0 24-25 3.5465848114892175E-4 26-27 0.003420415961795914 28-29 0.0 30-31 1.7461988525103696E-4 32-33 8.627971797035842E-4 34-35 8.688136819649491E-4 36-37 0.010342165877119057 38-39 0.011556997342906331 40-41 0.02483000712901631 42-43 0.0019906809759430866 44-45 0.001411674908468297 46-47 0.0018786734952022024 48-49 0.001692594554343663 50-51 5.3506145699174336E-5 52-53 9.095867104126218E-5 54-55 0.005597855903090891 56-57 0.003322103407176967 58-59 0.003452659151762208 60-61 0.0014037339322598111 62-63 3.436826489408904E-4 64-65 6.913943088450733E-4 66-67 6.115763602117277E-4 68-69 2.135071148399259E-5 70-71 0.0 72-73 1.7893418764061396E-4 74-75 3.1067423409924887E-4 76-77 0.001700717732851858 78-79 0.0018944632129602546 80-81 0.01067126329728013 82-83 0.009494983418583527 84-85 0.012396297570345516 86-87 0.006243560321392706 88-89 0.08425814405653133 90-91 3.751892517117176E-4 92-93 5.528704480793834E-5 94-95 3.0880639283165545E-4 96-97 0.016698569180007485 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 355.0 20-21 1417.0 22-23 3037.0 24-25 6148.0 26-27 8569.0 28-29 15218.0 30-31 37671.0 32-33 49187.0 34-35 67422.0 36-37 105759.0 38-39 81930.0 40-41 121867.0 42-43 134483.0 44-45 155579.0 46-47 156094.0 48-49 145797.0 50-51 139575.0 52-53 24024.0 54-55 23273.0 56-57 23465.0 58-59 25212.0 60-61 164407.0 62-63 156681.0 64-65 162391.0 66-67 173288.0 68-69 179146.0 70-71 180713.0 72-73 173613.0 74-75 172267.0 76-77 173113.0 78-79 189017.0 80-81 194880.0 82-83 186065.0 84-85 185470.0 86-87 197862.0 88-89 212630.0 90-91 233442.0 92-93 250933.0 94-95 318134.0 96-97 420264.0 98-99 1533068.0 100-101 9294681.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.90205717790978 #Duplication Level Percentage of deduplicated Percentage of total 1 88.03987858798982 72.10647170049778 2 7.99522806725063 13.096512526287807 3 2.077738658817257 5.105132113056137 4 0.8256190424561067 2.704795920896447 5 0.40425117600454885 1.6554501465680918 6 0.21236291524024076 1.0435775775884284 7 0.12175168500655999 0.6980199426839896 8 0.08126707570144397 0.532475254462495 9 0.057275665521995166 0.42218953492367556 >10 0.179984160759753 2.255795214906319 >50 0.003481043986701648 0.19100856212473424 >100 0.0011057203190619179 0.14169125647967923 >500 2.8102682715313685E-5 0.017757227711125624 >1k 2.809826317884116E-5 0.029123021813320764 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.219622199000917E-6 0.0 2 0.0 3.7317733194005504E-5 0.0 6.219622199000917E-6 0.0 3 0.0 4.353735539300642E-5 0.0 6.219622199000917E-6 0.0 4 0.0 7.463546638801101E-5 0.0 1.2439244398001834E-5 0.0 5 0.0 7.463546638801101E-5 0.0 1.2439244398001834E-5 6.219622199000917E-6 6 6.219622199000917E-6 7.463546638801101E-5 0.0 1.8658866597002752E-5 1.8658866597002752E-5 7 6.219622199000917E-6 8.085508858701192E-5 0.0 1.8658866597002752E-5 1.8658866597002752E-5 8 6.219622199000917E-6 8.707471078601284E-5 0.0 2.4878488796003667E-5 2.4878488796003667E-5 9 6.219622199000917E-6 1.7414942157202568E-4 0.0 3.7317733194005504E-5 3.7317733194005504E-5 10-11 1.2439244398001834E-5 1.803690437710266E-4 0.0 4.042754429350596E-5 3.7317733194005504E-5 12-13 1.8658866597002752E-5 1.8347885487052706E-4 0.0 5.286678869150779E-5 3.7317733194005504E-5 14-15 1.8658866597002752E-5 2.176867769650321E-4 0.0 5.5976599791008256E-5 5.9086410890508714E-5 16-17 1.8658866597002752E-5 2.176867769650321E-4 0.0 6.219622199000918E-5 9.329433298501375E-5 18-19 1.8658866597002752E-5 2.705535656565399E-4 0.0 8.085508858701192E-5 9.951395518401467E-5 20-21 1.8658866597002752E-5 3.358595987460495E-4 0.0 1.0573357738301558E-4 1.0884338848251605E-4 22-23 2.4878488796003667E-5 3.638478986415537E-4 0.0 1.7414942157202568E-4 1.2439244398001836E-4 24-25 4.353735539300642E-5 4.13604876233561E-4 0.0 3.7939695413905596E-4 1.3683168837802019E-4 26-27 5.908641089050872E-5 4.291539317310633E-4 0.0 7.836723970741156E-4 1.3683168837802019E-4 28-29 6.219622199000918E-5 4.353735539300642E-4 0.0 0.003486098242540014 1.3683168837802019E-4 30-31 6.219622199000918E-5 5.100090203180752E-4 0.0 0.012653821363867366 1.3683168837802019E-4 32-33 6.841584418901009E-5 5.131188314175756E-4 0.0 0.03343357913072943 1.586003660745234E-4 34-35 7.774527748751147E-5 6.219622199000917E-4 0.0 0.06011575836444336 1.865886659700275E-4 36-37 8.707471078601284E-5 7.308056083826078E-4 0.0 0.09671823500556376 1.8969847706952795E-4 38-39 8.707471078601284E-5 7.4635466388011E-4 0.0 0.16577159046997145 2.1457696586553167E-4 40-41 9.329433298501375E-5 8.209901302681211E-4 0.0 0.4841322821591319 2.3012602136303394E-4 42-43 9.329433298501375E-5 8.551980523626261E-4 0.0 0.5438468748917398 2.3012602136303394E-4 44-45 9.329433298501375E-5 9.858101185416454E-4 0.0 0.6351509287730732 2.3012602136303394E-4 46-47 9.329433298501375E-5 0.0010759946404271586 0.0 0.7508141329967937 2.5189469905953716E-4 48-49 9.329433298501375E-5 0.0010822142626261597 0.0 0.8462106982850698 2.7988299895504126E-4 50-51 9.329433298501375E-5 0.001172398784511673 0.0 0.9556294018209934 2.923222433530431E-4 52-53 9.329433298501375E-5 0.0011786184067106738 0.0 1.193775626009639 3.2653016544754814E-4 54-55 9.329433298501375E-5 0.0012283753843026811 0.0 1.9654317129952847 3.638478986415537E-4 56-57 9.329433298501375E-5 0.0012781323618946887 0.0 2.8064085991998953 3.7628714303955546E-4 58-59 9.329433298501375E-5 0.0012905716062926904 0.0 3.6795533714177386 3.918361985370578E-4 60-61 9.329433298501375E-5 0.0013372187727851972 0.0 4.357632132608316 4.042754429350596E-4 62-63 9.329433298501375E-5 0.0013776463170787033 0.0 4.374453100845514 4.291539317310633E-4 64-65 9.329433298501375E-5 0.001505148572158222 0.0 4.3851197529168005 4.322637428305638E-4 66-67 9.329433298501375E-5 0.0015206976276557244 0.0 4.393444717230164 4.353735539300642E-4 68-69 9.329433298501375E-5 0.001579784038546233 0.0 4.400774541991686 4.353735539300642E-4 70-71 9.329433298501375E-5 0.0016233213939392394 0.0 4.408272296552582 4.5403242052706694E-4 72-73 9.329433298501375E-5 0.0016388704494367417 0.0 4.414495028562682 4.8513053152207154E-4 74-75 9.329433298501375E-5 0.0016917372381282493 0.0 4.4199496372312055 4.8513053152207154E-4 76-77 9.329433298501375E-5 0.0017819217600137628 0.0 4.424797832735328 4.8513053152207154E-4 78-79 9.329433298501375E-5 0.00183167873760577 0.0 4.429254192040911 4.8513053152207154E-4 80-81 9.329433298501375E-5 0.0018441179820037719 0.0 4.431919300153183 4.944599648205729E-4 82-83 9.329433298501375E-5 0.0018596670375012742 0.0 4.4336918924798985 5.100090203180752E-4 84-85 9.329433298501375E-5 0.001884545526297278 0.0 4.435184601807658 5.131188314175756E-4 86-87 9.329433298501375E-5 0.0019218632594912835 0.0 4.435377410095827 5.22448264716077E-4 88-89 9.329433298501375E-5 0.0019996085369787947 0.0 4.435411618017922 5.348875091140789E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17215 0.0 47.272808 1 TATCTCG 20065 0.0 40.53436 94-95 GTATCAA 29890 0.0 33.87687 1 CCGTCTT 8360 0.0 31.02168 92-93 TGCCGTC 8205 0.0 30.835506 90-91 TATGCCG 8060 0.0 30.62491 88-89 GCCGTCT 8510 0.0 29.047316 90-91 ATGCCGT 8430 0.0 28.329395 88-89 CTATCTC 27620 0.0 28.085918 94-95 TCAACGC 36350 0.0 26.980032 4 ATCAACG 36525 0.0 26.88565 3 CAACGCA 37155 0.0 26.429697 5 CGTATGC 9545 0.0 26.26399 86-87 AACGCAG 37660 0.0 26.109125 6 ATCTCGT 15750 0.0 25.846981 94-95 TATCAAC 39300 0.0 25.235811 2 CGCTATC 29265 0.0 25.110336 92-93 GCTATCT 34390 0.0 25.015747 94-95 CTCGTAT 9895 0.0 24.71324 84-85 TCGTATG 9695 0.0 24.63579 84-85 >>END_MODULE