##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138784_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 41227851 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.433532080049478 31.0 31.0 34.0 30.0 34.0 2 31.559093342022607 31.0 31.0 34.0 30.0 34.0 3 31.595098274707553 31.0 31.0 34.0 30.0 34.0 4 35.41262077909421 37.0 35.0 37.0 33.0 37.0 5 35.23671583076207 37.0 35.0 37.0 32.0 37.0 6 35.253198960091325 37.0 35.0 37.0 32.0 37.0 7 35.15782661094802 37.0 35.0 37.0 32.0 37.0 8 35.15212352445923 37.0 35.0 37.0 32.0 37.0 9 36.68016804950614 39.0 35.0 39.0 32.0 39.0 10-11 36.5610205101401 39.0 35.0 39.0 32.0 39.0 12-13 36.5045160612422 38.0 35.0 39.0 32.0 39.0 14-15 37.56650663164568 39.0 36.0 41.0 32.0 41.0 16-17 37.54491424983563 39.0 36.0 41.0 32.0 41.0 18-19 37.55270056399496 39.0 36.0 41.0 32.0 41.0 20-21 37.53336835405935 39.0 36.0 41.0 32.0 41.0 22-23 37.441540848846444 39.0 36.0 41.0 32.0 41.0 24-25 37.33195969183521 39.0 36.0 41.0 31.0 41.0 26-27 37.118712087518574 39.0 36.0 41.0 31.0 41.0 28-29 36.93969110833762 39.0 36.0 40.0 30.5 41.0 30-31 36.778639612231544 39.0 35.5 40.0 30.0 41.0 32-33 36.59973077016352 38.0 35.0 40.0 30.0 41.0 34-35 36.45948316895818 38.0 35.0 40.0 30.0 41.0 36-37 36.30668899017415 38.0 35.0 40.0 30.0 41.0 38-39 36.14524799540466 38.0 35.0 40.0 30.0 41.0 40-41 35.94514509629637 38.0 34.0 40.0 29.0 41.0 42-43 35.744429518570485 38.0 34.0 40.0 28.0 41.0 44-45 35.94321411281197 38.0 34.0 40.0 29.0 41.0 46-47 35.92509359275833 38.0 34.0 40.0 29.0 41.0 48-49 36.27086566173855 38.0 35.0 40.0 30.0 41.0 50-51 36.33794204793979 38.0 35.0 40.0 29.5 41.0 52-53 36.261823172147075 38.0 34.5 40.0 29.0 41.0 54-55 36.13731049758084 38.0 34.0 40.0 29.0 41.0 56-57 36.01818259022049 38.0 34.0 40.0 28.5 41.0 58-59 35.84702735976788 38.0 34.0 40.0 28.0 41.0 60-61 35.64828557878903 38.0 34.0 40.0 28.0 41.0 62-63 35.43051701454207 37.0 33.5 40.0 28.0 41.0 64-65 35.206336494278546 37.0 33.0 40.0 28.0 41.0 66-67 34.9365129222158 36.5 33.0 39.0 28.0 41.0 68-69 34.66941129119606 36.0 32.5 39.0 27.0 41.0 70-71 34.421474561150475 36.0 32.0 39.0 26.5 40.0 72-73 34.10885926964223 35.0 32.0 38.5 26.0 40.0 74-75 33.79340991367976 35.0 32.0 38.0 26.0 40.0 76-77 31.929592873998793 33.5 29.5 35.5 25.0 38.5 78-79 33.057699854276365 34.5 31.0 36.0 26.0 39.0 80-81 33.14472567504049 35.0 31.0 36.0 26.0 39.0 82-83 32.93036404655451 34.0 31.0 36.0 26.0 37.5 84-85 32.698883979528375 34.0 31.0 35.5 26.0 37.0 86-87 32.51119761134653 34.0 31.0 35.0 26.0 37.0 88-89 32.34554349492648 34.0 31.0 35.0 26.0 36.0 90-91 32.17207124070349 34.0 31.0 35.0 26.0 36.0 92-93 32.15125656533482 34.0 31.0 35.0 26.0 36.0 94-95 32.160058484960764 34.0 31.0 35.0 26.0 35.0 96-97 32.26645241715178 34.0 31.0 35.0 26.5 35.0 98-99 32.41955551268395 34.0 31.0 35.0 27.0 35.0 100 30.933269798713575 32.0 29.0 34.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 45.0 20 612.0 21 4009.0 22 18735.0 23 62154.0 24 154014.0 25 308753.0 26 522094.0 27 777880.0 28 1052622.0 29 1329063.0 30 1604121.0 31 1891340.0 32 2231243.0 33 2652542.0 34 3230116.0 35 4010781.0 36 5221319.0 37 6751772.0 38 6553403.0 39 2772502.0 40 78726.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.50151318825713 21.966182520646054 14.611620188498303 23.920684102598507 2 14.40459812414768 22.86250268501437 41.13333205741515 21.5995671334228 3 17.414459824895054 28.155035834737745 31.404263727040245 23.026240613326955 4 12.227607982768737 19.619070128103452 40.00689242813068 28.14642946099713 5 12.215075192738036 38.898188023431054 36.609572495059226 12.277164288771685 6 27.908644222682135 40.37423269357527 19.439439262197315 12.27768382154528 7 24.522110065838746 33.421540695875706 25.152982143066343 16.9033670952192 8 23.23888043546097 38.00211900445648 22.108161786070298 16.650838774012257 9 25.09340336215477 16.501055683755496 21.98282987282434 36.4227110812654 10-11 23.17318020157696 27.44553219132948 30.33131565560539 19.049971951488175 12-13 24.161504856869836 25.07268762515224 30.15691989102108 20.608887626956847 14-15 21.38718777075727 26.387925081293655 27.524999945121635 24.69988720282744 16-17 20.955192227935218 29.35923803292162 28.186797765090166 21.498771974053 18-19 20.978873351489998 28.7291903945674 29.689290507510506 20.602645746432096 20-21 21.770018603961226 27.982879285780605 29.409023282029366 20.838078828228802 22-23 21.51678059876385 27.947307393211823 29.285730272464743 21.250181735559583 24-25 21.306303808205694 28.095819486572104 29.319829694696736 21.278047010525462 26-27 21.331900588337703 28.18945855113033 29.196399741876643 21.282241118655325 28-29 21.306298840409756 28.22945453376113 29.198901036319718 21.265345589509398 30-31 21.571374749464844 28.081651483916755 29.09431077497454 21.25266299164386 32-33 21.411784474524133 28.31301100156508 29.01465748285591 21.260547041054874 34-35 21.47379242071627 28.343567262834174 29.074032980788328 21.10860733566123 36-37 21.497960378897314 28.260043488032483 28.97002258366288 21.271973549407324 38-39 21.407793552191578 28.292183373829182 29.04280833489285 21.257214739086386 40-41 21.65274897435565 28.164245297839475 28.907085660366317 21.275920067438562 42-43 21.45836115285298 28.34126907160246 28.71386055577811 21.48650921976645 44-45 21.537447952607906 28.466237920789155 28.556161792760015 21.440152333842924 46-47 21.623900761771374 28.41055381715843 28.321743505463417 21.64380191560678 48-49 21.567578661035565 28.495633943631237 28.32631923957316 21.610468155760028 50-51 21.546207367383364 28.59188684097068 28.20989827100814 21.652007520637824 52-53 21.628231254417727 28.50664482049564 28.155890518843613 21.709233406243023 54-55 21.62551386173151 28.424350591047187 28.233471051664534 21.716664495556774 56-57 21.616359488240004 28.46562591309261 28.21524644520433 21.702768153463058 58-59 21.60324060905374 28.533918154200126 28.197279759596995 21.66556147714914 60-61 21.697430909759248 28.542004143100634 28.163778254599254 21.596786692540864 62-63 21.64867030979959 28.57398572384965 28.123558558301504 21.653785408049256 64-65 21.583842086004097 28.55474813846422 28.102035088808574 21.759374686723106 66-67 21.623009114767537 28.603463496672383 27.98044749662071 21.793079891939367 68-69 21.554772806263514 28.598826632927697 28.043332193483916 21.80306836732487 70-71 21.61455970933567 28.362375505474702 28.087745167967533 21.935319617222092 72-73 21.605905498461787 28.437106622199988 28.037450152818504 21.91953772651972 74-75 21.50549966939804 28.53414746660956 28.07213687186935 21.88821599212304 76-77 21.587225992071865 28.47989062293699 28.014109154405414 21.918774230585733 78-79 21.57428361583807 28.504959264636614 27.986955880229107 21.933801239296212 80-81 21.596361307017105 28.521618602337984 27.989609161955403 21.892410928689507 82-83 21.627345703671168 28.44220848217282 28.127606999482456 21.802838814673557 84-85 21.682765130584343 28.476743842557738 28.081652694241072 21.758838332616843 86-87 21.488496861632928 28.525020817258067 28.180362759808542 21.806119561300463 88-89 21.557165884749235 28.473301446294318 28.14988666385047 21.819646005105973 90-91 21.57905717282699 28.444698567464894 28.25824459586177 21.71799966384635 92-93 21.54625611578735 28.45942575335258 28.262479202690365 21.731838928169704 94-95 21.30229765157199 28.53618343621577 28.401843852813013 21.75967505939923 96-97 21.30932018716791 28.673680205010815 28.552493044450856 21.464506563370417 98-99 22.320455058372588 30.66551014049986 28.811891767190644 18.20214303393691 100 21.798804804611482 31.34634115458848 22.595538005979176 24.25931603482086 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 11991.0 1 10608.0 2 14363.0 3 20462.0 4 27065.0 5 43497.0 6 57671.0 7 66384.0 8 69853.5 9 65684.5 10 58321.0 11 51289.5 12 54402.0 13 71040.5 14 109115.5 15 164568.0 16 209875.0 17 232502.0 18 238927.5 19 236445.5 20 228420.5 21 223938.5 22 230530.5 23 256892.0 24 308513.5 25 382751.5 26 477422.5 27 576160.0 28 672150.0 29 775519.0 30 869339.5 31 961203.5 32 1065565.0 33 1159029.0 34 1245658.5 35 1329219.0 36 1416039.5 37 1504403.5 38 1567206.0 39 1602094.5 40 1636212.0 41 1666426.0 42 1688102.5 43 1711659.0 44 1723249.0 45 1734128.0 46 1738669.5 47 1726416.5 48 1698453.5 49 1646137.0 50 1587804.5 51 1519822.5 52 1431678.0 53 1337382.5 54 1238093.0 55 1127979.5 56 1020718.5 57 915387.5 58 807239.5 59 698306.0 60 580352.0 61 466167.5 62 368267.5 63 284841.5 64 213117.0 65 157478.5 66 117418.0 67 89005.5 68 68398.0 69 50372.5 70 36537.5 71 27173.0 72 19731.5 73 13926.0 74 9978.0 75 7129.0 76 5075.5 77 3589.5 78 2546.5 79 1860.0 80 1354.0 81 964.0 82 718.0 83 515.5 84 363.5 85 265.0 86 207.0 87 167.0 88 124.5 89 86.0 90 57.0 91 46.0 92 44.5 93 31.5 94 13.0 95 7.0 96 7.0 97 5.5 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.13313087795917375 3 2.8621428752131656E-4 4 0.0 5 0.0 6 6.306416504706977E-5 7 0.0 8 0.0 9 0.002464353526454726 10-11 4.208320244487155E-4 12-13 1.5280932299866905E-4 14-15 7.531316633505831E-4 16-17 0.0012261129012036062 18-19 3.638317214254025E-5 20-21 0.0027713839867128816 22-23 3.881876111209782E-5 24-25 8.203323399302859E-4 26-27 0.004915191037799968 28-29 0.001280912028809097 30-31 0.005884072524103031 32-33 0.005034891062716837 34-35 4.042407153992487E-5 36-37 8.74118168661864E-5 38-39 0.0 40-41 0.0 42-43 2.265842715621558E-5 44-45 0.0 46-47 0.0 48-49 2.322413324258709E-4 50-51 0.0 52-53 2.6427245337715285E-6 54-55 3.598155249791133E-5 56-57 0.0 58-59 0.0 60-61 0.0 62-63 3.1379168755545073E-4 64-65 1.4034523974629958E-6 66-67 0.0 68-69 1.4370868662676855E-6 70-71 5.82260242263348E-6 72-73 4.424584027157271E-6 74-75 3.286746195964772E-5 76-77 7.385542703298717E-4 78-79 0.00423450651079514 80-81 3.8863881880910525E-5 82-83 6.313780229432672E-6 84-85 3.2056466054470443E-6 86-87 1.6287341009492002E-6 88-89 0.0 90-91 8.822922686119809E-5 92-93 6.065953812228626E-4 94-95 0.0 96-97 1.855852347793337E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1767.0 20-21 6270.0 22-23 12294.0 24-25 21882.0 26-27 31982.0 28-29 51336.0 30-31 107610.0 32-33 133690.0 34-35 191126.0 36-37 251715.0 38-39 300004.0 40-41 315411.0 42-43 364245.0 44-45 403996.0 46-47 402195.0 48-49 376535.0 50-51 338016.0 52-53 316148.0 54-55 338202.0 56-57 370258.0 58-59 389633.0 60-61 396326.0 62-63 383251.0 64-65 399710.0 66-67 424355.0 68-69 437418.0 70-71 452282.0 72-73 433689.0 74-75 442303.0 76-77 398911.0 78-79 452045.0 80-81 485664.0 82-83 483110.0 84-85 486895.0 86-87 530683.0 88-89 657509.0 90-91 690514.0 92-93 748808.0 94-95 923330.0 96-97 1819688.0 98-99 2964321.0 100-101 2.2492724E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.78579708641954 #Duplication Level Percentage of deduplicated Percentage of total 1 87.86167672223665 70.10113910632964 2 7.61110466588896 12.14516104952235 3 2.149923879286957 5.146001711521112 4 0.926138384848808 2.9557075698996527 5 0.49376473461672893 1.9697706462280065 6 0.27709269305196016 1.3264836829183935 7 0.1798348670449506 1.0043787747778168 8 0.12218843269537348 0.7799121197872559 9 0.08440486439188272 0.6060878445129761 >10 0.28714320970916096 3.444320366043232 >50 0.005241972113123462 0.2810604972028255 >100 0.0014302149297224056 0.17932475395519729 >500 2.8340470777409308E-5 0.013033022474298045 >1k 2.701871496961194E-5 0.04761885482722113 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.3361985809059024E-5 0.0 4.851089619005366E-6 0.0 3 0.0 5.3361985809059024E-5 0.0 4.851089619005366E-6 0.0 4 0.0 1.576604126176744E-4 0.0 4.851089619005366E-6 2.425544809502683E-6 5 0.0 1.600859574271771E-4 0.0 7.276634428508049E-6 2.425544809502683E-6 6 0.0 1.6251150223667977E-4 0.0 7.276634428508049E-6 9.702179238010731E-6 7 0.0 1.697881366651878E-4 0.0 7.276634428508049E-6 9.702179238010731E-6 8 0.0 1.8919249514120928E-4 0.0 7.276634428508049E-6 1.2127724047513415E-5 9 0.0 3.104697356163434E-4 0.0 7.276634428508049E-6 2.1829903285524148E-5 10-11 0.0 3.104697356163434E-4 0.0 7.276634428508049E-6 2.1829903285524148E-5 12-13 1.2127724047513414E-6 3.104697356163434E-4 0.0 7.276634428508049E-6 2.1829903285524148E-5 14-15 3.6383172142540243E-6 4.329597484962289E-4 0.0 7.276634428508049E-6 3.274485492828622E-5 16-17 4.851089619005366E-6 4.463002449484937E-4 0.0 7.276634428508049E-6 3.638317214254025E-5 18-19 4.851089619005366E-6 4.875345067100393E-4 0.0 9.702179238010731E-6 4.244703416629696E-5 20-21 4.851089619005366E-6 5.396837201143471E-4 0.0 1.5766041261767438E-5 4.7298123785302314E-5 22-23 4.851089619005366E-6 6.233650160421896E-4 0.0 3.1532082523534876E-5 5.0936440999556346E-5 24-25 4.851089619005366E-6 6.852164086845079E-4 0.0 7.03407994755778E-5 5.578753061856171E-5 26-27 4.851089619005366E-6 7.167484912080429E-4 0.0 1.7827754349844722E-4 5.8213075428064395E-5 28-29 4.851089619005366E-6 7.203868084222969E-4 0.0 9.884095098723433E-4 5.8213075428064395E-5 30-31 7.276634428508049E-6 7.955786975168801E-4 0.0 0.0038857227848232982 5.8213075428064395E-5 32-33 8.48940683325939E-6 8.004297871358854E-4 0.0 0.009897435595175698 6.0638620237567074E-5 34-35 9.702179238010731E-6 9.132176207777602E-4 0.0 0.018561481654719283 6.791525466607512E-5 36-37 9.702179238010731E-6 0.0010308565440386402 0.0 0.03166791303286703 6.791525466607512E-5 38-39 9.702179238010731E-6 0.0010611758541574237 0.0 0.06560977432464282 7.03407994755778E-5 40-41 9.702179238010731E-6 0.0011703253705850447 0.0 0.099432783920753 7.03407994755778E-5 42-43 9.702179238010731E-6 0.0012091340875370876 0.0 0.1241224045366808 7.03407994755778E-5 44-45 9.702179238010731E-6 0.0013546667761072484 0.0 0.15452175763417791 7.03407994755778E-5 46-47 9.702179238010731E-6 0.001480795106201388 0.0 0.19048167220745996 7.397911668983183E-5 48-49 9.702179238010731E-6 0.0014856461958203933 0.0 0.2213091339638343 7.519188909458317E-5 50-51 9.702179238010731E-6 0.0016323916567953056 0.0 0.24771967862210426 7.519188909458317E-5 52-53 9.702179238010731E-6 0.001648157698057073 0.0 0.30534698497867374 8.610684073734524E-5 54-55 9.702179238010731E-6 0.0016493704704618245 0.0 0.3753651869945877 9.823456478485866E-5 56-57 9.702179238010731E-6 0.0016712003737473487 0.0 0.44975785907443977 1.0066010959436134E-4 58-59 9.702179238010731E-6 0.0016845408701996133 0.0 0.5085615546636181 1.0551119921336672E-4 60-61 9.702179238010731E-6 0.0017160729527231481 0.0 0.5367197043571347 1.0914951642762074E-4 62-63 9.702179238010731E-6 0.0017633710765084507 0.0 0.565655241162097 1.0914951642762074E-4 64-65 9.702179238010731E-6 0.0019452869372211519 0.0 0.5790551634621945 1.0914951642762074E-4 66-67 9.702179238010731E-6 0.001957414661268665 0.0 0.5900974562074555 1.1400060604662611E-4 68-69 9.702179238010731E-6 0.0020156277366967295 0.0 0.6041413606544761 1.2127724047513415E-4 70-71 9.702179238010731E-6 0.0020423087296012592 0.0 0.61455907561129 1.261283300941395E-4 72-73 9.702179238010731E-6 0.0020556492260535237 0.0 0.6220503707554391 1.3583050933215025E-4 74-75 9.702179238010731E-6 0.002113862301481588 0.0 0.627927465828864 1.3583050933215025E-4 76-77 9.702179238010731E-6 0.0022096713214569443 0.0 0.631907784861258 1.3583050933215025E-4 78-79 9.702179238010731E-6 0.0022509055832184897 0.0 0.6355000167241315 1.3583050933215025E-4 80-81 1.0914951642762074E-5 0.0022569694452422464 0.0 0.63643385147579 1.4189437135590696E-4 82-83 1.2127724047513415E-5 0.002266671624480257 0.0 0.6370365993609515 1.5038377818916634E-4 84-85 1.2127724047513415E-5 0.0022739482589087655 0.0 0.6373410052345441 1.5038377818916634E-4 86-87 1.2127724047513415E-5 0.0023066931138370516 0.0 0.6375035167367806 1.5038377818916634E-4 88 1.2127724047513415E-5 0.002389161637360143 0.0 0.6375180700056376 1.5038377818916634E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 48265 0.0 44.453686 1 GTATCAA 82435 0.0 33.248928 1 ATCAACG 99735 0.0 26.64867 3 TCAACGC 99960 0.0 26.576485 4 CAACGCA 101585 0.0 26.139095 5 AACGCAG 103675 0.0 25.700249 6 TATCAAC 106250 0.0 25.420856 2 ACGCAGA 119670 0.0 22.164595 7 CGCAGAG 120645 0.0 21.964823 8 GTACATG 107785 0.0 19.126787 1 TACATGG 104810 0.0 19.09059 2 ACATGGG 105475 0.0 18.330072 3 GCAGAGT 144760 0.0 18.12831 9 AGAGTAC 130060 0.0 17.808462 10-11 GAGTACT 86915 0.0 17.274622 12-13 CATGGGG 73950 0.0 16.679235 4 CAGAGTA 142805 0.0 16.496735 10-11 AGTACTT 95870 0.0 15.557109 12-13 GTACTTT 102095 0.0 14.708117 14-15 TATACTG 26060 0.0 14.273986 5 >>END_MODULE