##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138783_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 41274488 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.442559772031576 31.0 31.0 34.0 30.0 34.0 2 31.56930358530432 31.0 31.0 34.0 30.0 34.0 3 31.60530708460878 31.0 31.0 34.0 30.0 34.0 4 35.422124775963304 37.0 35.0 37.0 33.0 37.0 5 35.24750446328977 37.0 35.0 37.0 33.0 37.0 6 35.26257859334318 37.0 35.0 37.0 32.0 37.0 7 35.16543432349785 37.0 35.0 37.0 32.0 37.0 8 35.16041546051401 37.0 35.0 37.0 32.0 37.0 9 36.686907491135926 39.0 35.0 39.0 32.0 39.0 10-11 36.57250481217356 39.0 35.0 39.0 32.0 39.0 12-13 36.51713987342496 39.0 35.0 39.0 32.0 39.0 14-15 37.58131381302658 39.0 36.0 41.0 32.0 41.0 16-17 37.560485462593746 39.0 36.0 41.0 32.0 41.0 18-19 37.57175219229855 39.0 36.0 41.0 32.0 41.0 20-21 37.55270177146461 39.0 36.0 41.0 32.0 41.0 22-23 37.46222701766041 39.0 36.0 41.0 32.0 41.0 24-25 37.35383782750306 39.0 36.0 41.0 31.0 41.0 26-27 37.144839391932194 39.0 36.0 41.0 31.0 41.0 28-29 36.966051385141654 39.0 36.0 40.0 30.5 41.0 30-31 36.804822067058495 39.0 35.5 40.0 30.0 41.0 32-33 36.626943786302505 38.0 35.0 40.0 30.0 41.0 34-35 36.48815847869214 38.0 35.0 40.0 30.0 41.0 36-37 36.334938423515965 38.0 35.0 40.0 30.0 41.0 38-39 36.177445639535875 38.0 35.0 40.0 30.0 41.0 40-41 35.98200122748489 38.0 34.0 40.0 29.0 41.0 42-43 35.784774710639226 38.0 34.0 40.0 28.5 41.0 44-45 35.98512882946689 38.0 34.0 40.0 29.0 41.0 46-47 35.9707928901539 38.0 34.0 40.0 29.0 41.0 48-49 36.31134334491141 38.0 35.0 40.0 30.0 41.0 50-51 36.3812745561531 38.0 35.0 40.0 30.0 41.0 52-53 36.31054246757448 38.0 35.0 40.0 29.0 41.0 54-55 36.188981794146116 38.0 34.0 40.0 29.0 41.0 56-57 36.07678686250183 38.0 34.0 40.0 28.5 41.0 58-59 35.910528666555024 38.0 34.0 40.0 28.0 41.0 60-61 35.71498316458066 38.0 34.0 40.0 28.0 41.0 62-63 35.496094444538414 37.5 34.0 40.0 28.0 41.0 64-65 35.27023665133677 37.0 33.0 40.0 28.0 41.0 66-67 34.999862317854124 36.5 33.0 39.5 28.0 41.0 68-69 34.729573762690954 36.0 33.0 39.0 27.5 41.0 70-71 34.47909659663897 36.0 32.0 39.0 27.0 40.0 72-73 34.162146825395624 35.0 32.0 38.5 26.0 40.0 74-75 33.84651881186238 35.0 32.0 38.0 26.0 40.0 76-77 31.98186489636888 33.5 29.5 35.5 25.0 38.5 78-79 33.10738151408967 34.5 31.0 36.0 26.0 39.0 80-81 33.190305876514536 35.0 32.0 36.0 26.0 39.0 82-83 32.97789823101243 34.0 31.0 36.0 26.0 37.5 84-85 32.74973329599851 34.0 31.0 35.5 26.0 37.0 86-87 32.56232609429036 34.0 31.0 35.0 26.0 37.0 88-89 32.39686666496672 34.0 31.0 35.0 26.0 36.0 90-91 32.219309630017634 34.0 31.0 35.0 26.0 36.0 92-93 32.192952885894655 34.0 31.0 35.0 26.0 36.0 94-95 32.20151634274313 34.0 31.0 35.0 26.0 35.0 96-97 32.30525272427847 34.0 31.0 35.0 27.0 35.0 98-99 32.45311693529845 34.0 31.0 35.0 27.0 35.0 100 30.986829677452107 33.0 29.0 34.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 0.0 15 0.0 16 2.0 17 0.0 18 19.0 19 89.0 20 650.0 21 4055.0 22 18507.0 23 60281.0 24 149530.0 25 300891.0 26 508811.0 27 761004.0 28 1036391.0 29 1311318.0 30 1590297.0 31 1885294.0 32 2221308.0 33 2644599.0 34 3213769.0 35 3990326.0 36 5198390.0 37 6768830.0 38 6627336.0 39 2893645.0 40 89144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69115109777137 21.778550512329808 14.63734970225069 23.892948687648136 2 14.532640700471255 22.83072196990267 40.9750899432247 21.661547386401374 3 17.479412591525605 27.964970714641158 31.42621237257137 23.129404321261866 4 12.31683843055788 19.53420233825796 39.8347715421691 28.314187689015064 5 12.312176955411294 38.786780347220784 36.490805167589244 12.410237529778685 6 28.07152073321847 40.143367091493495 19.38335724036641 12.401754934921627 7 24.64924397485546 33.41712520860647 25.006125454690693 16.92750536184738 8 23.31129639479226 37.833836674941594 22.08445134642134 16.77041558384481 9 25.18511571187223 16.499735944428664 21.96245780798526 36.35269053571384 10-11 23.289363320207208 27.359772406577378 30.25889825130544 19.091966021909975 12-13 24.222283190814537 25.05518730369661 30.074962375624292 20.647567129864562 14-15 21.4629455348104 26.342386491363033 27.51755115106245 24.67711682276412 16-17 21.026166451395834 29.298702294895186 28.1547126916642 21.520418562044778 18-19 21.0580046597087 28.610465329190127 29.70147998392759 20.630050027173578 20-21 21.89002307339569 27.89626240066294 29.420812336179797 20.792902189761566 22-23 21.587591310084214 27.816915424043014 29.32578246706553 21.269710798807235 24-25 21.38765942880973 27.94994003466657 29.37262046428263 21.289780072241072 26-27 21.40691749109587 28.054941408154683 29.27559272299615 21.262548377753294 28-29 21.404039204803556 28.08745111721162 29.27284917552062 21.2356605024642 30-31 21.651746127406195 27.999516724894807 29.127648672909224 21.221088474789777 32-33 21.46152287061352 28.176814525119898 29.078958665829628 21.282703938436953 34-35 21.548807841968095 28.188246567920494 29.072744814046192 21.190200776065222 36-37 21.60090806356017 28.124507396325548 29.014877060088484 21.2597074800258 38-39 21.44530571366147 28.232297079771534 29.054111495081585 21.26828571148541 40-41 21.713957231535996 28.102730118203866 28.893272869470486 21.290039780789645 42-43 21.57007601034964 28.24315917053873 28.71414265712045 21.47262216199118 44-45 21.61461382953495 28.365274699087113 28.529205740447612 21.490905730930333 46-47 21.729699486383687 28.30772475979201 28.294146227429806 21.668429526394505 48-49 21.656776302207415 28.393542054426973 28.317648855985528 21.632032787380084 50-51 21.637737318439733 28.50937629450047 28.179860339978895 21.6730260470809 52-53 21.769495603053887 28.398803586801407 28.117701794880844 21.71399901526386 54-55 21.75863435594289 28.319035112987983 28.197932829415045 21.724397701654087 56-57 21.717282653514957 28.418382312364905 28.187236245670633 21.67709878844951 58-59 21.73377210196119 28.456350878137084 28.1318745257579 21.67800249414383 60-61 21.790921803226716 28.457446224514165 28.11231336077012 21.639318611488996 62-63 21.752775440750185 28.495154261832184 28.087630450608987 21.664439846808644 64-65 21.71363957305128 28.45488717114153 28.1080374870953 21.72343576871189 66-67 21.804457906426645 28.486226424956136 27.962983064226066 21.746332604391153 68-69 21.726540324668143 28.47032592336396 28.039835848719623 21.763297903248272 70-71 21.76190802117562 28.20010473765227 28.143227114030754 21.894760127141353 72-73 21.78756101634815 28.290052716320385 28.076417593221652 21.845968674109812 74-75 21.630498852225323 28.396387246784982 28.088937345241057 21.884176555748642 76-77 21.708129847762407 28.357251418955382 28.08130432747877 21.853314405803445 78-79 21.70533643228492 28.372411532581353 28.04601390639349 21.876238128740237 80-81 21.727185058328853 28.3417075246351 28.054543411204612 21.87656400583143 82-83 21.76304746255411 28.277548720666907 28.167344997533256 21.79205881924573 84-85 21.802463483771827 28.26187408267127 28.142265446547256 21.79339698700965 86-87 21.641565142029748 28.290639579026355 28.22809960806665 21.83969567087725 88-89 21.710413848971807 28.25760481783067 28.188169624582482 21.84381170861504 90-91 21.76286608177028 28.222532278354294 28.298585766985628 21.7160158728898 92-93 21.75558282490972 28.171008483756626 28.268587366920105 21.804821324413545 94-95 21.517992831448137 28.20551469349705 28.430694248141368 21.845798226913445 96-97 21.561916155891495 28.337243424923525 28.541044993050633 21.559795426134347 98-99 22.574720248728504 30.316861519089837 28.82892553311566 18.279492699065997 100 21.953972608970144 30.997922374399582 22.681909302606567 24.366195714023707 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9258.0 1 8493.5 2 12766.0 3 18788.5 4 25207.0 5 41334.5 6 55669.0 7 65700.5 8 71735.5 9 69517.0 10 62598.5 11 55518.5 12 58139.5 13 74021.0 14 112230.5 15 169029.5 16 215690.5 17 239565.5 18 247520.0 19 245333.0 20 236677.5 21 230905.0 22 235268.0 23 259850.5 24 312208.0 25 389985.0 26 488640.5 27 588857.5 28 679886.5 29 775790.0 30 862927.0 31 945844.0 32 1043900.0 33 1136009.0 34 1224402.0 35 1312486.0 36 1404596.5 37 1486765.5 38 1540394.0 39 1583497.0 40 1632750.5 41 1672579.5 42 1693430.0 43 1715621.5 44 1732026.0 45 1740617.5 46 1737218.5 47 1714607.0 48 1684868.5 49 1641235.5 50 1590505.0 51 1525434.5 52 1438147.0 53 1345941.5 54 1252892.0 55 1153173.0 56 1052600.0 57 949588.0 58 840270.0 59 729695.5 60 611479.5 61 497236.5 62 396299.0 63 310164.0 64 236082.0 65 176180.0 66 133417.0 67 103971.0 68 81332.0 69 59930.0 70 43200.5 71 31741.0 72 22864.0 73 16272.5 74 11598.0 75 8302.0 76 5950.5 77 4100.0 78 2847.5 79 2075.5 80 1501.0 81 1084.0 82 823.0 83 584.0 84 427.0 85 327.0 86 251.5 87 199.5 88 142.5 89 93.5 90 66.0 91 52.0 92 40.0 93 25.5 94 13.0 95 8.5 96 7.5 97 6.5 98 3.0 99 0.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.4228041302414216E-6 2 0.13362249339107488 3 2.64085650196315E-4 4 0.0 5 0.0 6 5.57244949955527E-5 7 2.4228041302414216E-6 8 2.4228041302414216E-6 9 0.002371925243506352 10-11 4.4700736202954233E-4 12-13 1.1871740238182966E-4 14-15 6.590027234256667E-4 16-17 0.0012392643126184872 18-19 4.724468053970773E-5 20-21 0.0028918142720592943 22-23 4.362111210934795E-5 24-25 8.666749237150308E-4 26-27 0.00523716180372704 28-29 0.001372960193586659 30-31 0.006013825792793012 32-33 0.004944557909820872 34-35 4.161507773996395E-5 36-37 7.628795133320885E-5 38-39 0.0 40-41 0.0 42-43 1.2593375471439306E-5 44-45 0.0 46-47 0.0 48-49 2.547922953357813E-4 50-51 0.0 52-53 5.300406852604497E-6 54-55 3.343814005615788E-5 56-57 0.0 58-59 0.0 60-61 0.0 62-63 2.778455831145951E-4 64-65 0.0 66-67 0.0 68-69 2.890883013567463E-6 70-71 2.92874137924975E-6 72-73 4.451689882996087E-6 74-75 3.758609979431232E-5 76-77 7.38843377406331E-4 78-79 0.003922660807180512 80-81 2.97477088980016E-5 82-83 4.770035400817727E-6 84-85 9.689878037381095E-6 86-87 4.925311832574071E-6 88-89 6.690130179730849E-6 90-91 7.018368285178282E-5 92-93 4.771217657546835E-4 94-95 0.0 96-97 1.871782627936764E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1682.0 20-21 5885.0 22-23 11903.0 24-25 23169.0 26-27 32361.0 28-29 51573.0 30-31 111327.0 32-33 140236.0 34-35 199777.0 36-37 264770.0 38-39 318822.0 40-41 323134.0 42-43 382954.0 44-45 426337.0 46-47 420854.0 48-49 386048.0 50-51 354714.0 52-53 345465.0 54-55 370755.0 56-57 396932.0 58-59 399451.0 60-61 398760.0 62-63 382975.0 64-65 399245.0 66-67 425236.0 68-69 441936.0 70-71 453763.0 72-73 438008.0 74-75 446162.0 76-77 406572.0 78-79 457387.0 80-81 488919.0 82-83 485703.0 84-85 496474.0 86-87 538904.0 88-89 664204.0 90-91 695045.0 92-93 754100.0 94-95 894743.0 96-97 1776933.0 98-99 2922789.0 100-101 2.2338481E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.17809576205302 #Duplication Level Percentage of deduplicated Percentage of total 1 88.48714117161508 71.83217619739673 2 7.48477792648832 12.15200038548339 3 1.989580739444436 4.845311273788701 4 0.8065157414455386 2.618856483706765 5 0.42148921630538 1.710784598195541 6 0.2509508261986921 1.2223026120434248 7 0.14076663108854826 0.7999016941025432 8 0.10492608862778205 0.6814160056451002 9 0.07139386421419906 0.5216056151402936 >10 0.23480599710676964 2.9647276202537194 >50 0.005846061013250165 0.32418558482315396 >100 0.001744963474524909 0.23144645390877203 >500 2.7255085244584956E-5 0.01684162695105325 >1k 3.351789227446771E-5 0.07844384856081774 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2114020651207108E-5 2 0.0 1.9382433041931373E-5 0.0 2.4228041302414216E-6 1.2114020651207108E-5 3 0.0 2.1805237172172796E-5 0.0 9.691216520965686E-6 1.2114020651207108E-5 4 0.0 6.783851564675981E-5 0.0 1.2114020651207108E-5 1.4536824781448531E-5 5 0.0 7.510692803748407E-5 0.0 1.4536824781448531E-5 1.6959628911689953E-5 6 0.0 7.510692803748407E-5 0.0 1.4536824781448531E-5 3.3919257823379906E-5 7 0.0 7.510692803748407E-5 0.0 1.9382433041931373E-5 4.118767021410417E-5 8 2.4228041302414216E-6 8.237534042820834E-5 0.0 2.665084543265564E-5 4.361047434434559E-5 9 4.845608260482843E-6 1.574822684656924E-4 0.0 4.361047434434559E-5 7.995253629796691E-5 10-11 6.057010325603555E-6 1.574822684656924E-4 0.0 5.451309293043199E-5 8.84323507538119E-5 12-13 7.268412390724266E-6 1.574822684656924E-4 0.0 7.268412390724264E-5 9.812356727477759E-5 14-15 9.691216520965686E-6 2.3985760889390074E-4 0.0 9.448936107941545E-5 1.453682478144853E-4 16-17 9.691216520965686E-6 2.4954882541486644E-4 0.0 1.223516085771918E-4 1.7444189737738237E-4 18-19 9.691216520965686E-6 2.834680832382463E-4 0.0 1.4900245400984742E-4 1.8655591802858949E-4 20-21 9.691216520965686E-6 3.1981014519186766E-4 0.0 1.7080769118202023E-4 1.9140152628907233E-4 22-23 9.691216520965686E-6 3.634206195362133E-4 0.0 1.9624713454955518E-4 2.1684096965660725E-4 24-25 9.691216520965686E-6 4.0824249594567956E-4 0.0 2.338005985682972E-4 2.3743480476365932E-4 26-27 9.691216520965686E-6 4.3852754757369735E-4 0.0 2.9194789769409135E-4 2.3864620682878003E-4 28-29 1.2114020651207108E-5 4.4095035170393877E-4 0.0 6.481001048395804E-4 2.4106901095902146E-4 30-31 1.2114020651207108E-5 5.063660632204571E-4 0.0 0.0018255829121369112 2.459146192195043E-4 32-33 1.574822684656924E-5 5.124230735460606E-4 0.0 0.004525798115290976 2.8346808323824636E-4 34-35 2.1805237172172796E-5 5.86318599518424E-4 0.0 0.009308413468387542 2.9437070182433277E-4 36-37 2.1805237172172796E-5 6.602141254907874E-4 0.0 0.015642834866903738 2.992163100848156E-4 38-39 2.1805237172172796E-5 6.66271135816391E-4 0.0 0.025097827985170885 3.0648472247553983E-4 40-41 4.6033278474587016E-5 7.438008679841165E-4 0.0 0.034154269824013324 3.125417328011434E-4 42-43 4.6033278474587016E-5 7.607604968958065E-4 0.0 0.04601268463947997 3.1981014519186766E-4 44-45 5.935870119091483E-5 8.564612600403425E-4 0.0 0.05931993632483097 3.2707855758259193E-4 46-47 7.87411342328462E-5 9.388366004685509E-4 0.0 0.07325227147578427 3.3919257823379905E-4 48-49 8.722094868869118E-5 9.400480025336717E-4 0.0 0.08640688650093006 3.525180009501269E-4 50-51 9.933496933989829E-5 0.0010078865181804314 0.0 0.0992538054015352 3.6099781540597186E-4 52-53 9.933496933989829E-5 0.0010151549305711556 0.0 0.11354956117202472 3.9007146496886894E-4 54-55 1.0660338173062256E-4 0.0010200005388316387 0.0 0.127381349951573 4.215679186620074E-4 56-57 1.1629459825158825E-4 0.0010248461470921215 0.0 0.13904351763249007 4.3004773311785237E-4 58-59 1.1629459825158825E-4 0.0010369601677433283 0.0 0.15010482988910728 4.3973894963881806E-4 60-61 1.1750600031670895E-4 0.0010539197966550184 0.0 0.1641546710403773 4.4821876409466304E-4 62-63 1.1992880444695037E-4 0.0010696680235015876 0.0 0.17764726724169178 4.5064156822490446E-4 64-65 1.2840861890279535E-4 0.0012089792609904695 0.0 0.18864922079711804 4.518529702900252E-4 66-67 1.332542271632782E-4 0.0012198818795765558 0.0 0.19956153059972542 4.542757744202666E-4 68-69 1.3931123748888176E-4 0.0012586467456604186 1.2114020651207108E-6 0.21342481583296685 4.56698578550508E-4 70-71 1.429454436842439E-4 0.0012877203952233157 2.4228041302414216E-6 0.22342130567434296 4.7123540333195656E-4 72-73 1.4657964987960603E-4 0.0012962002096791607 2.4228041302414216E-6 0.2303553710950939 5.039432590902157E-4 74-75 1.5505946433545098E-4 0.001327696663372299 2.4228041302414216E-6 0.23593145480084454 5.039432590902157E-4 76-77 1.5505946433545098E-4 0.0013761527459771276 2.4228041302414216E-6 0.23989758516204973 5.148458776763022E-4 78-79 1.562708664005717E-4 0.0013906895707585761 2.4228041302414216E-6 0.2436044754813191 5.233256921321471E-4 80-81 1.574822684656924E-4 0.0013906895707585761 2.4228041302414216E-6 0.24453119806113643 5.354397127833542E-4 82-83 1.574822684656924E-4 0.0014040149934749038 2.4228041302414216E-6 0.24513811049576195 5.693589706067342E-4 84-85 1.574822684656924E-4 0.0014185518182563525 2.4228041302414216E-6 0.2454627662492143 5.74204578867217E-4 86-87 1.574822684656924E-4 0.0014415684574936459 2.4228041302414216E-6 0.24562388272387534 5.74204578867217E-4 88 1.574822684656924E-4 0.0015021385607496816 2.4228041302414216E-6 0.24563599674452655 5.74204578867217E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 46415 0.0 47.60017 1 GTATCAA 82605 0.0 34.52177 1 TCAACGC 101895 0.0 27.291777 4 ATCAACG 101985 0.0 27.27966 3 CAACGCA 103725 0.0 26.786348 5 AACGCAG 106425 0.0 26.157299 6 TATCAAC 108690 0.0 25.8481 2 ACGCAGA 123525 0.0 22.51619 7 CGCAGAG 124875 0.0 22.239653 8 GTACATG 108590 0.0 20.319208 1 TACATGG 106825 0.0 20.09669 2 ACATGGG 107790 0.0 19.291704 3 GCAGAGT 148620 0.0 18.38328 9 AGAGTAC 132480 0.0 18.143913 10-11 GAGTACT 89765 0.0 17.378904 12-13 CAGAGTA 144735 0.0 16.854803 10-11 CATGGGG 74865 0.0 16.854673 4 AGTACTT 99490 0.0 15.725868 12-13 GTGGTAT 22800 0.0 14.966655 1 GTACTTT 105300 0.0 14.806767 14-15 >>END_MODULE