##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138781_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6882308 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83342535672626 33.0 33.0 33.0 33.0 33.0 2 32.8342243619437 33.0 33.0 33.0 33.0 33.0 3 32.831675652993155 33.0 33.0 33.0 33.0 33.0 4 36.78058784930869 37.0 37.0 37.0 37.0 37.0 5 36.791141140443 37.0 37.0 37.0 37.0 37.0 6 36.80167438016433 37.0 37.0 37.0 37.0 37.0 7 36.788062376749195 37.0 37.0 37.0 37.0 37.0 8 36.78510697283527 37.0 37.0 37.0 37.0 37.0 9 36.784888296193664 37.0 37.0 37.0 37.0 37.0 10-11 36.76618948178431 37.0 37.0 37.0 37.0 37.0 12-13 36.75206544083758 37.0 37.0 37.0 37.0 37.0 14-15 39.10569419444756 40.0 40.0 40.0 37.0 40.0 16-17 39.06269837095347 40.0 40.0 40.0 37.0 40.0 18-19 39.04854788538961 40.0 40.0 40.0 37.0 40.0 20-21 39.10607562470335 40.0 40.0 40.0 37.0 40.0 22-23 39.13523456118416 40.0 40.0 40.0 37.0 40.0 24-25 39.14058528104505 40.0 40.0 40.0 37.0 40.0 26-27 38.878530919497706 40.0 40.0 40.0 37.0 40.0 28-29 38.88141973555666 40.0 40.0 40.0 37.0 40.0 30-31 38.90277593286915 40.0 40.0 40.0 37.0 40.0 32-33 38.884386248336114 40.0 40.0 40.0 37.0 40.0 34-35 38.85697139499974 40.0 40.0 40.0 37.0 40.0 36-37 38.82961868114631 40.0 40.0 40.0 37.0 40.0 38-39 38.78431220652426 40.0 37.0 40.0 37.0 40.0 40-41 38.75088470582338 40.0 37.0 40.0 37.0 40.0 42-43 38.70295816167939 40.0 37.0 40.0 37.0 40.0 44-45 38.639978241057705 40.0 37.0 40.0 37.0 40.0 46-47 38.57315707166046 40.0 37.0 40.0 37.0 40.0 48-49 38.53517482351895 40.0 37.0 40.0 37.0 40.0 50-51 38.48439318437854 40.0 37.0 40.0 37.0 40.0 52-53 38.438363314257025 40.0 37.0 40.0 37.0 40.0 54-55 38.366705150630615 40.0 37.0 40.0 37.0 40.0 56-57 38.2599316391896 40.0 37.0 40.0 37.0 40.0 58-59 38.14645228847856 40.0 37.0 40.0 37.0 40.0 60-61 38.000968522867794 40.0 37.0 40.0 37.0 40.0 62-63 37.834834773641326 40.0 37.0 40.0 33.0 40.0 64-65 37.64462464865535 38.5 37.0 40.0 33.0 40.0 66-67 37.43170431099013 37.0 37.0 40.0 33.0 40.0 68-69 37.19026722899209 37.0 37.0 40.0 33.0 40.0 70-71 36.94540028931969 37.0 37.0 40.0 33.0 40.0 72-73 36.70139546489864 37.0 37.0 40.0 33.0 40.0 74-75 36.428399192042136 37.0 37.0 37.0 33.0 40.0 76-77 34.759669876995545 37.0 33.0 37.0 30.0 37.0 78-79 31.442239502329723 37.0 33.0 37.0 8.5 37.0 80-81 34.61551862539808 37.0 33.0 37.0 30.0 37.0 82-83 35.65058260616363 37.0 35.0 37.0 33.0 37.0 84-85 35.759006529007195 37.0 37.0 37.0 33.0 37.0 86-87 35.713074424713724 37.0 37.0 37.0 33.0 37.0 88-89 35.63441818675974 37.0 37.0 37.0 33.0 37.0 90-91 35.567263276988925 37.0 37.0 37.0 33.0 37.0 92-93 35.49959077277964 37.0 35.0 37.0 33.0 37.0 94-95 35.45271572942814 37.0 33.0 37.0 33.0 37.0 96-97 35.43096281050381 37.0 33.0 37.0 33.0 37.0 98-99 35.398988558490075 37.0 33.0 37.0 33.0 37.0 100 35.34982479561349 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 0.0 13 1.0 14 0.0 15 1.0 16 0.0 17 2.0 18 1.0 19 9.0 20 28.0 21 96.0 22 373.0 23 1084.0 24 2767.0 25 5741.0 26 10762.0 27 17557.0 28 27051.0 29 38581.0 30 52161.0 31 69937.0 32 94307.0 33 129835.0 34 188451.0 35 302489.0 36 644177.0 37 2076316.0 38 3064578.0 39 155997.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.7869424036239 20.58581220137198 14.892126304140996 23.735119090863126 2 14.014237665620314 20.936813638680512 42.83603698061755 22.212911715081628 3 17.716269773232256 26.419209088145738 31.172282341153025 24.69223879746898 4 11.81846191856874 18.91824173588251 39.225712687028114 30.037583658520635 5 12.869606691656617 37.7301027180568 35.93322701414266 13.467063576143925 6 28.75304331047085 38.41442434718121 19.2575804512091 13.574951891138845 7 25.50779476884789 33.23694609424629 22.954102025076473 18.301157111829344 8 23.70183083930565 36.8695792167395 21.70674430728761 17.721845636667236 9 24.814379129791924 17.221490232637073 21.387854190774373 36.576276446796626 10-11 23.374020995138622 27.17053836958026 29.17210543120894 20.28333520407218 12-13 24.58609088695246 24.6808628733268 29.07854458126547 21.654501658455274 14-15 21.80007214150196 26.189726338150393 26.94319456083588 25.06700695951176 16-17 21.161180316340122 29.52169748300261 27.60585021811362 21.711271982543646 18-19 21.069174759397573 28.127838800588407 29.58220556243632 21.220780877577695 20-21 21.778459539539092 27.14879370524077 29.767466494395407 21.30528026082473 22-23 21.279297979050856 27.522328324530655 29.667804867983083 21.530568828435406 24-25 21.20852612129042 27.724422333828315 29.87243580873264 21.194615736148627 26-27 21.16476378064428 27.750314084925186 29.75516285505197 21.32975927937856 28-29 20.640798031211688 27.525552411593914 29.946098801008386 21.887550756186016 30-31 21.05378583633159 27.33079279876995 30.089290781965932 21.526130582932538 32-33 20.900138425338056 27.61433667226188 30.036334826396054 21.449190076004008 34-35 20.986534344360226 28.117445951915816 30.103773609762396 20.792246093961563 36-37 21.15317775543633 27.82817995850802 29.456527387212834 21.562114898842815 38-39 21.15574661107777 27.636816672470626 29.732288763531905 21.4751479529197 40-41 21.322042007274653 27.551577160846335 29.737433141750834 21.388947690128173 42-43 21.447976823377182 27.532642246672445 29.686290425028417 21.33309050492196 44-45 21.309006279863947 27.936309907939936 29.300451661757627 21.454232150438486 46-47 21.720161701493847 27.613245468138047 28.674922328669556 21.991670501698554 48-49 21.537336467781987 27.74300955659264 28.87755944903075 21.842094526594625 50-51 21.3861376434778 28.127855671392552 28.761139938126924 21.72486674700272 52-53 21.414881697628687 28.239286425963734 28.920963187715955 21.424868688691625 54-55 21.41572838585311 28.247036261859904 28.58020616218417 21.75702919010282 56-57 21.759857796337883 28.48438376888851 28.096754412312848 21.65900402246076 58-59 21.278711105964813 28.715057968471115 28.71097356266028 21.29525736290379 60-61 21.731711507571816 29.046443929013112 28.032316572089876 21.189527991325193 62-63 21.284478155127292 29.27968045441014 28.036714946435005 21.399126444027562 64-65 21.308190671620178 29.05950834457251 28.104065134828765 21.528235848978543 66-67 21.466688046152882 28.869795913033077 28.014951566080875 21.648564474733167 68-69 21.57059867591668 28.62763717473809 28.095241771220802 21.70652237812442 70-71 21.5250899795338 28.249111392361005 28.251434661651835 21.974363966453364 72-73 21.61671597854607 28.184151376291684 28.211342214000545 21.987790431161706 74-75 21.622018153770483 28.266180078919717 28.123104906771896 21.988696860537907 76-77 21.632420891046664 28.22095123286995 28.042525124216667 22.10410275186672 78-79 22.231913229691667 28.176786614302706 27.634176704254287 21.957123451751336 80-81 21.647498456969306 28.22258860339276 28.005611706974786 22.124301232663147 82-83 21.761831249805407 28.185534787296067 28.086466567743685 21.96616739515484 84-85 21.95325543336294 28.1816130507252 27.988756482227974 21.876375033683885 86-87 21.700961060285685 28.17349102461339 28.15231560650536 21.973232308595563 88-89 21.802702199016988 28.086761290535044 28.152344103758935 21.958192406689037 90-91 21.829592983140266 27.976879269238015 28.19976697544156 21.993760772180163 92-93 21.81066190117871 27.928396978813474 28.30220870020869 21.958732419799126 94-95 21.60894122532862 28.13652669278098 28.30294479801513 21.951587283875266 96-97 21.645810961975855 28.226554513129372 28.449597954453353 21.67803657044142 98-99 22.78411619127499 30.058250927795555 28.690373750478347 18.467259130451104 100 21.75812705606384 31.138635341955055 22.4192609369588 24.6839766650223 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1244.0 1 1138.5 2 1653.0 3 2492.0 4 3710.0 5 6175.0 6 8144.0 7 9538.5 8 10437.0 9 10437.5 10 9874.5 11 9350.0 12 10578.0 13 14407.0 14 22721.0 15 33608.5 16 42526.5 17 48105.5 18 49479.0 19 47119.5 20 42823.5 21 38057.0 22 35168.0 23 36011.0 24 40492.5 25 48526.0 26 59681.0 27 73038.0 28 87615.5 29 104145.5 30 121179.0 31 137735.0 32 155662.5 33 173432.5 34 191676.0 35 209376.5 36 226682.5 37 242266.0 38 252350.0 39 261042.5 40 271699.0 41 278703.5 42 281910.5 43 287375.0 44 292556.5 45 302277.0 46 314671.5 47 320909.0 48 311975.0 49 296781.5 50 284390.5 51 263150.0 52 238463.0 53 216797.5 54 196785.5 55 177636.0 56 159161.5 57 140099.5 58 121139.5 59 103601.5 60 86710.0 61 70345.0 62 55229.0 63 42350.5 64 31792.5 65 23237.5 66 16769.0 67 12413.0 68 9363.5 69 6721.5 70 4555.5 71 3168.0 72 2169.0 73 1450.5 74 982.0 75 621.5 76 394.0 77 256.5 78 172.0 79 116.0 80 75.5 81 46.5 82 31.5 83 21.5 84 16.0 85 11.5 86 8.0 87 6.5 88 4.0 89 2.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 3.4872022583121826E-4 4 0.02409075560117333 5 0.016593270745802136 6 0.0 7 0.0 8 0.0 9 0.0 10-11 7.265004704817046E-6 12-13 0.0 14-15 7.265004704817046E-6 16-17 7.265004704817046E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008945743087124343 26-27 0.052527162780121844 28-29 0.08429325909185086 30-31 0.0750332775425313 32-33 0.03678990628570361 34-35 0.004266752694549469 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.494703493041468E-6 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.996832426988684E-4 56-57 6.202921910223203E-4 58-59 0.0 60-61 0.0 62-63 8.182733532146483E-6 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.013956938216363866 74-75 0.029326043176421686 76-77 0.0010398094575604854 78-79 5.133304874694335 80-81 0.0 82-83 0.01290606805745433 84-85 0.05139221303501901 86-87 0.041102483178616714 88-89 0.010121743431952043 90-91 9.464847131834247E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 405.0 22-23 960.0 24-25 1927.0 26-27 2385.0 28-29 5672.0 30-31 14206.0 32-33 19002.0 34-35 26073.0 36-37 37598.0 38-39 42443.0 40-41 47424.0 42-43 55294.0 44-45 66145.0 46-47 64896.0 48-49 56841.0 50-51 47329.0 52-53 42001.0 54-55 49362.0 56-57 56732.0 58-59 60270.0 60-61 59534.0 62-63 66193.0 64-65 70201.0 66-67 77808.0 68-69 65183.0 70-71 55074.0 72-73 51358.0 74-75 52833.0 76-77 54414.0 78-79 55033.0 80-81 55239.0 82-83 53209.0 84-85 53111.0 86-87 56254.0 88-89 60911.0 90-91 63613.0 92-93 65628.0 94-95 71357.0 96-97 209135.0 98-99 411265.0 100-101 4477913.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.85787634501611 #Duplication Level Percentage of deduplicated Percentage of total 1 90.75313799257064 78.82624837680885 2 6.742290722658462 11.712421077416359 3 1.4624608835137416 3.8107873973897872 4 0.5005498198538915 1.7390677742955756 5 0.22579507529451778 0.9806040364622416 6 0.10746916783665303 0.5600726214514674 7 0.05918219756450729 0.3598307998519001 8 0.037260308270271325 0.2589080998653127 9 0.02310403775967009 0.18060908893200073 >10 0.08560659616502934 1.1303350320937626 >50 0.0017348506733313772 0.09745486182699024 >100 0.0012321265086125382 0.22737747388355284 >500 1.51046932675651E-4 0.08313458328804742 >1k 2.517439803508801E-5 0.03314877643413307 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.4530009409634094E-5 0.0 2 0.0 1.4530009409634094E-5 0.0 1.4530009409634094E-5 0.0 3 0.0 1.4530009409634094E-5 0.0 1.4530009409634094E-5 0.0 4 0.0 4.359002822890228E-5 0.0 1.4530009409634094E-5 0.0 5 0.0 4.359002822890228E-5 0.0 1.4530009409634094E-5 0.0 6 0.0 4.359002822890228E-5 0.0 1.4530009409634094E-5 1.4530009409634094E-5 7 0.0 4.359002822890228E-5 0.0 1.4530009409634094E-5 1.4530009409634094E-5 8 0.0 7.265004704817047E-5 0.0 1.4530009409634094E-5 2.906001881926819E-5 9 0.0 1.1624007527707275E-4 0.0 2.906001881926819E-5 2.906001881926819E-5 10-11 0.0 1.1624007527707275E-4 0.0 1.0171006586743866E-4 2.906001881926819E-5 12-13 0.0 1.1624007527707275E-4 0.0 1.0171006586743866E-4 2.906001881926819E-5 14-15 0.0 1.5256509880115797E-4 0.0 1.380350893915239E-4 5.085503293371933E-5 16-17 0.0 1.5983010350597502E-4 0.0 1.5983010350597502E-4 7.265004704817047E-5 18-19 0.0 1.5983010350597502E-4 0.0 2.1068513643969435E-4 7.265004704817047E-5 20-21 0.0 1.7436011291560913E-4 0.0 3.6325023524085237E-4 7.265004704817047E-5 22-23 0.0 2.2521514584932846E-4 0.0 7.846205081202411E-4 7.265004704817047E-5 24-25 0.0 2.470101599637796E-4 0.0 0.0019833462844150536 7.265004704817047E-5 26-27 0.0 2.470101599637796E-4 0.0 0.005114563312191201 7.991505175298751E-5 28-29 0.0 2.470101599637796E-4 0.0 0.01517659482836281 8.718005645780457E-5 30-31 0.0 2.760701787830478E-4 0.0 0.016004805364711952 8.718005645780457E-5 32-33 0.0 2.906001881926819E-4 0.0 0.017755671498572864 1.0171006586743866E-4 34-35 0.0 3.269252117167671E-4 0.0 0.020538168300517794 1.1624007527707275E-4 36-37 0.0 3.632502352408523E-4 0.0 0.024497595864643083 1.1624007527707275E-4 38-39 0.0 3.632502352408523E-4 0.0 0.04998323236914128 1.1624007527707275E-4 40-41 0.0 3.777802446504864E-4 0.0 0.07688554479107881 1.3077008468670684E-4 42-43 0.0 3.850452493553035E-4 0.0 0.08392533435004652 1.4530009409634092E-4 44-45 0.0 4.4316528699383986E-4 0.0 0.09400189587562777 1.5983010350597502E-4 46-47 0.0 4.7949031051792507E-4 0.0 0.10500111299872078 1.888901223252432E-4 48-49 0.0 4.7949031051792507E-4 0.0 0.11562981488186812 1.888901223252432E-4 50-51 0.0 5.812003763853638E-4 0.0 0.12626578176972025 1.888901223252432E-4 52-53 0.0 5.812003763853638E-4 0.0 0.20953726569633324 1.9615512703006027E-4 54-55 0.0 5.812003763853638E-4 0.0 0.31547556430197543 2.0342013173487732E-4 56-57 0.0 5.812003763853638E-4 0.0 0.42397840956841804 2.1068513643969435E-4 58-59 0.0 5.884653810901808E-4 0.0 0.5393684792950272 2.179501411445114E-4 60-61 0.0 6.10260395204632E-4 0.0 0.5758460679179136 2.179501411445114E-4 62-63 0.0 6.10260395204632E-4 0.0 0.6338280704670585 2.179501411445114E-4 64-65 0.0 6.538504234335342E-4 0.0 0.6409405100730743 2.179501411445114E-4 66-67 0.0 6.538504234335342E-4 0.0 0.6460405433758559 2.2521514584932846E-4 68-69 0.0 6.683804328431683E-4 0.0 0.6503341611564027 2.3974515525896256E-4 70-71 0.0 6.683804328431683E-4 0.0 0.6542354686828895 2.615401693734137E-4 72-73 0.0 6.756454375479854E-4 0.0 0.6576354908847439 3.05130197602316E-4 74-75 0.0 6.974404516624365E-4 0.0 0.6600474724467431 3.05130197602316E-4 76-77 0.0 7.337654751865217E-4 0.0 0.6622560338770075 3.05130197602316E-4 78-79 0.0 7.410304798913387E-4 0.0 0.6639778399920492 3.05130197602316E-4 80-81 0.0 7.410304798913387E-4 0.0 0.6647188704719404 3.12395202307133E-4 82-83 0.0 7.410304798913387E-4 0.0 0.6653146008577355 3.632502352408523E-4 84-85 0.0 7.410304798913387E-4 0.0 0.6654526359471271 3.632502352408523E-4 86-87 0.0 7.410304798913387E-4 0.0 0.6655180209894704 3.7051523994566937E-4 88 0.0 7.70090498710607E-4 0.0 0.6655180209894704 3.777802446504864E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10875 0.0 48.948006 1 GTATCAA 19740 0.0 36.758293 1 CTTATAC 11770 0.0 30.806608 1 ATCAACG 23385 0.0 30.434526 3 TCAACGC 23485 0.0 30.340797 4 CAACGCA 23955 0.0 29.773312 5 TATCAAC 24445 0.0 29.321535 2 AACGCAG 24400 0.0 29.245022 6 ACGCAGA 27680 0.0 25.749151 7 TATACAC 15295 0.0 25.606525 3 CGCAGAG 27885 0.0 25.544756 8 TTATACA 15300 0.0 24.662312 2 GCAGAGT 32210 0.0 21.997099 9 GTGGTAT 5250 0.0 21.57795 1 TGGTATC 5215 0.0 20.511461 2 ACACATC 17860 0.0 20.342361 6 GAGTACT 20810 0.0 20.341455 12-13 TACACAT 19460 0.0 20.27247 5 CAGAGTA 31585 0.0 19.560019 10-11 GTACATG 20690 0.0 18.603855 1 >>END_MODULE