##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138780_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6751003 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.818973417727705 33.0 33.0 33.0 33.0 33.0 2 32.8176202854598 33.0 33.0 33.0 33.0 33.0 3 32.81600615493728 33.0 33.0 33.0 33.0 33.0 4 36.76228095291914 37.0 37.0 37.0 37.0 37.0 5 36.773591124163325 37.0 37.0 37.0 37.0 37.0 6 36.78438700145741 37.0 37.0 37.0 37.0 37.0 7 36.77049662102061 37.0 37.0 37.0 37.0 37.0 8 36.76524332754703 37.0 37.0 37.0 37.0 37.0 9 36.76665067398133 37.0 37.0 37.0 37.0 37.0 10-11 36.743085879238976 37.0 37.0 37.0 37.0 37.0 12-13 36.72912980486011 37.0 37.0 37.0 37.0 37.0 14-15 39.049353851568426 40.0 40.0 40.0 37.0 40.0 16-17 39.00192460290715 40.0 40.0 40.0 37.0 40.0 18-19 38.97902422795546 40.0 40.0 40.0 37.0 40.0 20-21 39.0334916805065 40.0 40.0 40.0 37.0 40.0 22-23 39.0668076619381 40.0 40.0 40.0 37.0 40.0 24-25 39.07170270866854 40.0 40.0 40.0 37.0 40.0 26-27 38.79786800952907 40.0 40.0 40.0 37.0 40.0 28-29 38.795405790059974 40.0 40.0 40.0 37.0 40.0 30-31 38.81671318818964 40.0 37.0 40.0 37.0 40.0 32-33 38.80249306733671 40.0 37.0 40.0 37.0 40.0 34-35 38.77355195239284 40.0 37.0 40.0 37.0 40.0 36-37 38.73832281632578 40.0 37.0 40.0 37.0 40.0 38-39 38.68875694144728 40.0 37.0 40.0 37.0 40.0 40-41 38.6500141645287 40.0 37.0 40.0 37.0 40.0 42-43 38.59494371115224 40.0 37.0 40.0 37.0 40.0 44-45 38.52717351034798 40.0 37.0 40.0 37.0 40.0 46-47 38.45170719629335 40.0 37.0 40.0 37.0 40.0 48-49 38.401352171149476 40.0 37.0 40.0 37.0 40.0 50-51 38.33555274363152 40.0 37.0 40.0 37.0 40.0 52-53 38.26687484521506 40.0 37.0 40.0 37.0 40.0 54-55 38.19541934125667 40.0 37.0 40.0 37.0 40.0 56-57 38.087004553741764 40.0 37.0 40.0 37.0 40.0 58-59 37.95229906034414 40.0 37.0 40.0 35.0 40.0 60-61 37.78918297785546 40.0 37.0 40.0 33.0 40.0 62-63 37.59987798450073 38.5 37.0 40.0 33.0 40.0 64-65 37.38659478850059 37.0 37.0 40.0 33.0 40.0 66-67 37.15841773704297 37.0 37.0 40.0 33.0 40.0 68-69 36.89945604277335 37.0 37.0 40.0 33.0 40.0 70-71 36.6431388031219 37.0 37.0 40.0 33.0 40.0 72-73 36.39594612448201 37.0 37.0 37.0 33.0 40.0 74-75 36.12713189317324 37.0 37.0 37.0 33.0 40.0 76-77 34.41085790135562 35.0 33.0 37.0 30.0 37.0 78-79 31.095077737451568 37.0 33.0 37.0 8.5 37.0 80-81 34.327195766035615 37.0 33.0 37.0 30.0 37.0 82-83 35.42579500843739 37.0 33.0 37.0 33.0 37.0 84-85 35.56319276688981 37.0 37.0 37.0 33.0 37.0 86-87 35.52825528539006 37.0 37.0 37.0 33.0 37.0 88-89 35.44257074992426 37.0 33.0 37.0 33.0 37.0 90-91 35.3662519338446 37.0 33.0 37.0 33.0 37.0 92-93 35.28647677128282 37.0 33.0 37.0 33.0 37.0 94-95 35.23290958439118 37.0 33.0 37.0 33.0 37.0 96-97 35.20262609266348 37.0 33.0 37.0 33.0 37.0 98-99 35.168008679361705 37.0 33.0 37.0 33.0 37.0 100 35.11439804265727 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 12.0 21 116.0 22 425.0 23 1301.0 24 3180.0 25 6342.0 26 11746.0 27 19463.0 28 29454.0 29 41521.0 30 57141.0 31 77167.0 32 103912.0 33 143018.0 34 209053.0 35 340039.0 36 744524.0 37 2194168.0 38 2647126.0 39 121293.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.53804997568509 20.1014278915296 14.508673748182307 23.851848384603 2 14.540965246201193 20.796554230534337 41.850462812710944 22.81201771055353 3 18.106870251622354 25.933900065027498 30.624619500251075 25.33461018309907 4 12.442431202277254 18.314304115558812 38.530710198764865 30.712554483399074 5 13.479091601217966 37.39812321378121 35.38139507252136 13.741390112479468 6 29.80903726453684 37.60568614767317 18.787000983409428 13.798275604380564 7 26.341182191742472 32.764079648609254 22.648190202255872 18.246547957392405 8 24.37763692298759 36.29364407036999 21.23352633675322 18.0951926698892 9 25.370437548316893 16.907354359048572 21.096968850406377 36.625239242228155 10-11 23.980703311789377 26.749328951564678 28.72862743506409 20.541340301581855 12-13 25.064349697370897 24.30095202149962 28.745180530952215 21.88951775017727 14-15 22.205218987460086 25.731109881005832 26.531383558857847 25.53228757267624 16-17 21.686229438795984 28.951090674970814 27.194899780077126 22.16778010615608 18-19 21.7259939004619 27.82233247415236 29.01739193420593 21.434281691179816 20-21 22.435598091652665 26.972763130071804 29.087246935301277 21.504391842974254 22-23 22.160718433646124 27.174256986894907 28.87520532262614 21.78981925683283 24-25 22.04046904312834 27.337775199132324 28.925521558909228 21.696234198830112 26-27 22.050168965121717 27.45918081889046 28.860549222468308 21.630100993519513 28-29 21.761555794584595 27.360052063641422 28.949529212147834 21.92886292962615 30-31 22.302967431632098 27.26305481918417 28.862894436345165 21.571083312838567 32-33 22.076773411767313 27.40102819979178 28.907228773226063 21.61496961521484 34-35 22.02840705431457 27.521170446651638 28.969700206099635 21.480722292934153 36-37 22.073623364132576 27.36880775045194 28.779580221036145 21.77798866437934 38-39 21.828684617068536 27.33825791305451 28.94742921722481 21.885628252652147 40-41 22.071882759038335 27.23337673348271 28.844629988493914 21.85011051898504 42-43 22.083749752815425 27.28801089098084 28.707282790962434 21.920956565241294 44-45 22.015879761091366 27.50872082280405 28.44806424739624 22.027335168708344 46-47 22.265336834274645 27.390752762358094 27.97958997541193 22.36432042795533 48-49 22.161628167654097 27.524160264292806 28.0245059279259 22.289705640127185 50-51 22.10906192591686 27.71688882260494 27.934232514846652 22.239816736631546 52-53 22.184053995834972 27.721328840559167 27.975837184505615 22.11877997910025 54-55 22.167184422865347 27.649626430537577 27.834720178868054 22.34846896772902 56-57 22.33277346392735 27.812925551952844 27.583447189173555 22.270853794946248 58-59 22.05652896416778 27.941862516400214 27.91967548262268 22.081933036809325 60-61 22.325913455522713 28.0627496629234 27.593488728883912 22.01784815266997 62-63 22.046899444637198 28.291113643369243 27.559491069370484 22.102495842623078 64-65 22.05833319270739 28.188064240812356 27.517590227198042 22.23601233928221 66-67 22.148785888577304 28.134840497638365 27.394190030770638 22.322183583013693 68-69 22.158653676781746 27.99479793394446 27.512995615001273 22.333552774272526 70-71 22.186316315373418 27.732811826773172 27.55633452793351 22.524537329919898 72-73 22.186808387350652 27.7117269830013 27.470943079657346 22.630521549990704 74-75 22.19084952173404 27.841626458517908 27.38483373467316 22.58269028507489 76-77 22.33268662442683 27.70180226796703 27.317561592620216 22.647949514985925 78-79 22.84406081826848 27.722434693018233 26.887781370599377 22.54572311811391 80-81 22.371497307183407 27.82775336393568 27.181296228837127 22.61945310004378 82-83 22.438733187657984 27.795548303076558 27.255056118631753 22.5106623906337 84-85 22.495573145029592 27.843146290424908 27.1870108161825 22.474269748363 86-87 22.324725818750128 27.888469088422973 27.26758016880772 22.51922492401917 88-89 22.426021953235253 27.913771343837553 27.21799878866356 22.442207914263633 90-91 22.510831325245555 27.903460207906015 27.204209212157476 22.38149925469095 92-93 22.55664565490164 27.87593884941276 27.2428871923594 22.3245283033262 94-95 22.394345374464823 28.00090076005492 27.302560648006473 22.30219321747378 96-97 22.482530718382705 28.001926248358057 27.455428474759476 22.06011455849977 98-99 23.593078407307043 29.89102921768924 27.62247626543634 18.893416109567372 100 22.55805845724621 30.781113675585956 21.547778217161433 25.113049650006396 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1617.0 1 1440.0 2 1872.0 3 2641.0 4 3625.0 5 5822.0 6 7636.0 7 8908.5 8 9818.0 9 9905.0 10 9486.0 11 9073.5 12 9959.0 13 12981.5 14 20207.5 15 30162.0 16 38328.0 17 43431.5 18 44794.0 19 42393.5 20 38182.0 21 33536.5 22 30167.5 23 30493.0 24 34493.5 25 41574.5 26 51411.5 27 62877.0 28 75863.0 29 90290.5 30 105115.0 31 119855.0 32 135524.0 33 150943.5 34 166174.5 35 180995.0 36 196536.5 37 210644.0 38 221766.0 39 232567.5 40 244354.0 41 254430.5 42 260607.5 43 266054.0 44 270983.5 45 276603.0 46 282713.5 47 289010.5 48 296565.0 49 294315.5 50 283028.5 51 272409.0 52 258742.0 53 241519.5 54 224011.5 55 207571.0 56 190328.5 57 171409.5 58 151178.5 59 130222.0 60 108262.0 61 87288.0 62 69351.0 63 53776.0 64 40180.5 65 29450.5 66 21889.5 67 16554.5 68 12412.0 69 8873.0 70 6259.5 71 4478.0 72 3086.0 73 2040.0 74 1335.0 75 869.5 76 575.5 77 369.0 78 242.0 79 161.5 80 111.0 81 72.0 82 46.5 83 29.5 84 20.0 85 19.0 86 15.0 87 9.5 88 8.5 89 6.5 90 5.0 91 5.5 92 5.0 93 3.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 1.9256397901171128E-4 4 0.021774542242093506 5 0.015701370596339536 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008689948418896112 26-27 0.052674439431842295 28-29 0.08534679149892276 30-31 0.07553645953481357 32-33 0.036123260866169904 34-35 0.004556746748321182 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 4.3122872155777064E-4 56-57 7.962070945912526E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 8.571019121600819E-6 72-73 0.014155650062991345 74-75 0.02954423632248838 76-77 0.0010737781526808676 78-79 5.278083021357021 80-81 0.0 82-83 0.012901043653691446 84-85 0.0508188775361005 86-87 0.03993242120474306 88-89 0.009816903103623705 90-91 2.827959926676655E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 393.0 22-23 881.0 24-25 1912.0 26-27 2979.0 28-29 5337.0 30-31 12769.0 32-33 17063.0 34-35 23240.0 36-37 33325.0 38-39 37546.0 40-41 42364.0 42-43 50725.0 44-45 60185.0 46-47 58885.0 48-49 51716.0 50-51 42890.0 52-53 37310.0 54-55 42564.0 56-57 46697.0 58-59 46879.0 60-61 50669.0 62-63 55570.0 64-65 59184.0 66-67 64572.0 68-69 58302.0 70-71 52439.0 72-73 49891.0 74-75 51234.0 76-77 53035.0 78-79 51698.0 80-81 53008.0 82-83 51501.0 84-85 51494.0 86-87 55134.0 88-89 58286.0 90-91 60495.0 92-93 63319.0 94-95 76590.0 96-97 218455.0 98-99 414311.0 100-101 4486082.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.43858858116641 #Duplication Level Percentage of deduplicated Percentage of total 1 91.12999373224933 79.68278029358424 2 6.508726611921589 11.382277368142022 3 1.362787830161853 3.574807332148283 4 0.46976676648560833 1.6430297209535993 5 0.21644547216398344 0.946284329540143 6 0.09897654034216254 0.5192621394099343 7 0.060297055727527096 0.36906026138904346 8 0.03509772100025559 0.2455116149342331 9 0.024926996448422084 0.1961623248315998 >10 0.09061539908306414 1.2302619947856726 >50 0.001785543930015105 0.10652345124221067 >100 5.552326992221363E-4 0.0845957654967833 >500 2.5097787007946517E-5 0.019443403542222234 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.4812613770131637E-5 0.0 1.4812613770131637E-5 1.4812613770131637E-5 5 0.0 1.4812613770131637E-5 0.0 1.4812613770131637E-5 1.4812613770131637E-5 6 0.0 1.4812613770131637E-5 0.0 4.4437841310394914E-5 2.9625227540263275E-5 7 0.0 2.9625227540263275E-5 0.0 5.925045508052655E-5 2.9625227540263275E-5 8 0.0 2.9625227540263275E-5 0.0 5.925045508052655E-5 4.4437841310394914E-5 9 0.0 5.925045508052655E-5 0.0 7.406306885065819E-5 4.4437841310394914E-5 10-11 0.0 5.925045508052655E-5 0.0 7.406306885065819E-5 4.4437841310394914E-5 12-13 0.0 5.925045508052655E-5 0.0 9.628198950585565E-5 5.184414819546073E-5 14-15 7.406306885065819E-6 8.1469375735724E-5 0.0 1.1109460327598727E-4 8.887568262078983E-5 16-17 1.4812613770131637E-5 8.887568262078983E-5 0.0 1.2590721704611892E-4 1.3331352393118474E-4 18-19 1.4812613770131637E-5 1.0368829639092146E-4 0.0 1.4071983081625057E-4 1.3331352393118474E-4 20-21 1.4812613770131637E-5 1.0368829639092146E-4 0.0 1.555324445863822E-4 1.3331352393118474E-4 22-23 1.4812613770131637E-5 1.1109460327598727E-4 0.0 1.6293875147144803E-4 1.555324445863822E-4 24-25 1.4812613770131637E-5 1.3331352393118474E-4 0.0 1.7775136524157966E-4 1.7775136524157966E-4 26-27 1.4812613770131637E-5 1.3331352393118474E-4 0.0 2.4440812720717204E-4 1.925639790117113E-4 28-29 1.4812613770131637E-5 1.3331352393118474E-4 0.0 5.628793232650023E-4 2.0737659278184293E-4 30-31 1.4812613770131637E-5 1.4812613770131638E-4 0.0 0.0018219514937261915 2.2218920655197458E-4 32-33 1.4812613770131637E-5 1.4812613770131638E-4 0.0 0.004740036406442124 2.2218920655197458E-4 34-35 1.4812613770131637E-5 1.925639790117113E-4 0.0 0.008369126780124376 2.6662704786236947E-4 36-37 1.4812613770131637E-5 2.295955134370404E-4 0.0 0.014871864225212163 2.6662704786236947E-4 38-39 1.4812613770131637E-5 2.4440812720717204E-4 0.0 0.04147531855636859 2.6662704786236947E-4 40-41 1.4812613770131637E-5 2.9625227540263277E-4 0.0 0.0687305278934108 2.6662704786236947E-4 42-43 1.4812613770131637E-5 3.036585822876986E-4 0.0 0.08001033327936605 2.8143966163250115E-4 44-45 1.4812613770131637E-5 3.480964235980935E-4 0.0 0.09374162624427806 2.9625227540263277E-4 46-47 1.4812613770131637E-5 3.851279580234226E-4 0.0 0.11023547167731965 3.036585822876986E-4 48-49 1.4812613770131637E-5 3.851279580234226E-4 0.0 0.1251962115851526 3.110648891727644E-4 50-51 1.4812613770131637E-5 4.8140994752927826E-4 0.0 0.14089758218149212 3.110648891727644E-4 52-53 1.4812613770131637E-5 4.888162544143441E-4 0.0 0.2309804928245477 3.25877502942896E-4 54-55 1.4812613770131637E-5 4.888162544143441E-4 0.0 0.34516352607160744 3.406901167130277E-4 56-57 1.4812613770131637E-5 5.036288681844757E-4 0.0 0.46429397231789116 3.406901167130277E-4 58-59 1.4812613770131637E-5 5.036288681844757E-4 0.0 0.580965524678333 3.406901167130277E-4 60-61 1.4812613770131637E-5 5.332540957247389E-4 0.0 0.6688857937109494 3.406901167130277E-4 62-63 1.4812613770131637E-5 5.332540957247389E-4 0.0 0.7274400559442797 3.555027304831593E-4 64-65 1.4812613770131637E-5 6.221297783455288E-4 0.0 0.7345056727126325 3.555027304831593E-4 66-67 1.4812613770131637E-5 6.295360852305946E-4 0.0 0.7407862209511682 3.555027304831593E-4 68-69 1.4812613770131637E-5 6.517550058857921E-4 0.0 0.7461187619084158 3.555027304831593E-4 70-71 1.4812613770131637E-5 6.59161312770858E-4 0.0 0.7504070135948688 3.555027304831593E-4 72-73 1.4812613770131637E-5 6.739739265409896E-4 0.0 0.7534880372590562 3.851279580234226E-4 74-75 1.4812613770131637E-5 6.813802334260554E-4 0.0 0.7557543671658863 3.851279580234226E-4 76-77 1.4812613770131637E-5 6.813802334260554E-4 0.0 0.7581910421310729 3.851279580234226E-4 78-79 1.4812613770131637E-5 6.813802334260554E-4 0.0 0.7598426485664427 3.851279580234226E-4 80-81 2.2218920655197457E-5 6.813802334260554E-4 0.0 0.7605980918687194 3.851279580234226E-4 82-83 2.9625227540263275E-5 6.813802334260554E-4 0.0 0.760998032440513 3.851279580234226E-4 84-85 2.9625227540263275E-5 6.887865403111212E-4 0.0 0.7611239396575591 3.851279580234226E-4 86-87 2.9625227540263275E-5 7.110054609663186E-4 0.0 0.7611461585782142 3.851279580234226E-4 88 2.9625227540263275E-5 7.554433022767136E-4 0.0 0.7611461585782142 3.851279580234226E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9370 0.0 50.93048 1 GTATCAA 17365 0.0 38.151264 1 TCAACGC 20795 0.0 31.306479 4 ATCAACG 20920 0.0 31.099337 3 TATCAAC 21425 0.0 30.643986 2 CAACGCA 21295 0.0 30.50386 5 AACGCAG 22005 0.0 29.590292 6 ACGCAGA 25195 0.0 25.826935 7 CGCAGAG 25340 0.0 25.628862 8 GTGGTAT 4425 0.0 22.856056 1 GCAGAGT 29180 0.0 22.15429 9 TGGTATC 4245 0.0 22.02331 2 GTACATG 19205 0.0 21.529608 1 TACATGG 19300 0.0 20.895199 2 ACATGGG 19290 0.0 20.553556 3 CTTATAC 10355 0.0 20.190756 1 GAGTACT 18910 0.0 20.058037 12-13 CAGAGTA 28685 0.0 19.49371 10-11 AGAGTAC 27020 0.0 18.619936 10-11 GTACTTT 20735 0.0 18.354208 14-15 >>END_MODULE