##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138779_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7081409 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.89146199576948 33.0 33.0 33.0 33.0 33.0 2 32.94738490602647 33.0 33.0 33.0 33.0 33.0 3 33.61535592704785 33.0 33.0 33.0 33.0 37.0 4 36.78036334294489 37.0 37.0 37.0 37.0 37.0 5 36.7932929731922 37.0 37.0 37.0 37.0 37.0 6 36.796312428783594 37.0 37.0 37.0 37.0 37.0 7 36.78853939943308 37.0 37.0 37.0 37.0 37.0 8 36.77716002563896 37.0 37.0 37.0 37.0 37.0 9 36.78211158259606 37.0 37.0 37.0 37.0 37.0 10-11 36.774694697058166 37.0 37.0 37.0 37.0 37.0 12-13 37.02703967529626 37.0 37.0 37.0 37.0 38.5 14-15 39.095695150499004 40.0 40.0 40.0 37.0 40.0 16-17 39.053382737813905 40.0 40.0 40.0 37.0 40.0 18-19 39.03681873197834 40.0 40.0 40.0 37.0 40.0 20-21 39.094747083980494 40.0 40.0 40.0 37.0 40.0 22-23 39.12519733346015 40.0 40.0 40.0 37.0 40.0 24-25 39.107406231968056 40.0 40.0 40.0 37.0 40.0 26-27 38.84100170571656 40.0 40.0 40.0 37.0 40.0 28-29 38.866316352925 40.0 40.0 40.0 37.0 40.0 30-31 38.867972525487346 40.0 40.0 40.0 37.0 40.0 32-33 38.849441543944835 40.0 40.0 40.0 37.0 40.0 34-35 38.8217592189869 40.0 37.0 40.0 37.0 40.0 36-37 38.79299626214474 40.0 37.0 40.0 37.0 40.0 38-39 38.73692581624593 40.0 37.0 40.0 37.0 40.0 40-41 38.6999890365106 40.0 37.0 40.0 37.0 40.0 42-43 38.64304634823086 40.0 37.0 40.0 37.0 40.0 44-45 38.56902985320502 40.0 37.0 40.0 37.0 40.0 46-47 38.493728377806775 40.0 37.0 40.0 37.0 40.0 48-49 38.44305377602831 40.0 37.0 40.0 37.0 40.0 50-51 38.379062782599334 40.0 37.0 40.0 37.0 40.0 52-53 38.31614577171426 40.0 37.0 40.0 37.0 40.0 54-55 38.2256940782853 40.0 37.0 40.0 37.0 40.0 56-57 38.10846153725451 40.0 37.0 40.0 37.0 40.0 58-59 37.97462022917492 40.0 37.0 40.0 37.0 40.0 60-61 37.807936571898274 40.0 37.0 40.0 33.0 40.0 62-63 37.61750502092464 38.5 37.0 40.0 33.0 40.0 64-65 37.40651248380762 37.0 37.0 40.0 33.0 40.0 66-67 37.17559134214889 37.0 37.0 40.0 33.0 40.0 68-69 36.92486031702186 37.0 37.0 40.0 33.0 40.0 70-71 36.678006145255935 37.0 37.0 40.0 33.0 40.0 72-73 36.43075355951456 37.0 37.0 37.0 33.0 40.0 74-75 35.955430908716735 37.0 35.0 37.0 33.0 40.0 76-77 34.13704583630002 37.0 33.0 37.0 27.0 37.0 78-79 31.85402758303009 37.0 33.0 37.0 10.5 37.0 80-81 34.668186504751134 37.0 33.0 37.0 30.0 37.0 82-83 35.56669527897242 37.0 35.0 37.0 33.0 37.0 84-85 35.665879615784476 37.0 37.0 37.0 33.0 37.0 86-87 35.62908553604428 37.0 37.0 37.0 33.0 37.0 88-89 35.55668727109692 37.0 37.0 37.0 33.0 37.0 90-91 35.4878588873733 37.0 33.0 37.0 33.0 37.0 92-93 35.41868444823946 37.0 33.0 37.0 33.0 37.0 94-95 35.375703075665434 37.0 33.0 37.0 33.0 37.0 96-97 35.350363001872395 37.0 33.0 37.0 33.0 37.0 98-99 35.308676838938865 37.0 33.0 37.0 33.0 37.0 100 35.245371535018045 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 0.0 15 0.0 16 0.0 17 1.0 18 6.0 19 1.0 20 28.0 21 133.0 22 442.0 23 1231.0 24 3006.0 25 6219.0 26 11267.0 27 19024.0 28 28952.0 29 40408.0 30 56252.0 31 75772.0 32 101331.0 33 139997.0 34 204269.0 35 330839.0 36 724202.0 37 2222368.0 38 2945323.0 39 170336.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.707867681853855 0.0 24.442796305300078 29.849336012846074 2 15.086042794039564 23.7794999830541 38.43672684343121 22.69773037947513 3 16.738635575683723 24.127211336935524 32.96715028963855 26.167002797742207 4 13.15372729147422 23.432091232411576 36.46232877679754 26.95185269931666 5 17.50465538828092 35.612954160755486 32.186983838017206 14.695406612946392 6 28.244679589143857 36.98281471707322 19.870808178260592 14.901697515522336 7 26.29457305665766 32.66353245004383 22.074889626469766 18.967004866828745 8 24.354111498730198 32.02140026390232 21.594773242835323 22.02971499453216 9 23.830924584489413 20.379690027745895 23.34377570110351 32.445609686661186 10-11 24.775854972919582 25.921072057910514 28.009646668455858 21.293426300714046 12-13 25.253660676851176 23.97356938428496 28.058144925677926 22.714625013185934 14-15 22.69583637945499 26.19657330906886 26.19460336212751 24.91298694934864 16-17 21.799877679710352 28.779138445470387 27.03976002515883 22.38122384966043 18-19 21.89896106834106 27.504166190654995 29.07464460815637 21.522228132847573 20-21 22.616216567359203 26.79268011533482 29.067234749857807 21.523868567448172 22-23 22.43641552634755 26.666995745769867 28.84515338158085 22.051435346301734 24-25 22.199667985306583 26.922350946595085 29.1952034473015 21.682777620796838 26-27 22.254354630177396 27.182306271414014 28.900545664938655 21.662793433469936 28-29 21.825317643009758 26.81974468552415 29.309864644212375 22.045073027253714 30-31 22.291699355827255 26.9933988852096 29.083554734140165 21.631347024822983 32-33 22.073756795236037 27.03610117065199 28.956870858119032 21.933271175992942 34-35 21.99431089415737 26.99979897781106 29.23863112784122 21.767259000190347 36-37 22.191826206444308 27.038642435801396 28.965976138746473 21.80355521900782 38-39 21.924412002871037 27.084201542500118 29.0779500052398 21.913436449389042 40-41 22.18712122680776 26.809358578658525 28.838852288111976 22.164667906421737 42-43 22.256582559272733 26.844311567855772 28.790101017885526 22.109004854985965 44-45 22.088132749826762 27.3341958916527 28.517415372823063 22.06025598569747 46-47 22.44597203579634 26.944107958408893 27.976983613010496 22.632936392784266 48-49 22.251596058200203 27.175691560287135 28.131344776667234 22.44136760484543 50-51 22.231479885935578 27.50925222864467 27.810036064597625 22.44923182082213 52-53 22.398636478255877 27.35906105577641 27.95699088415416 22.28531158181355 54-55 22.24750205883332 27.456492238861784 27.885553255947688 22.41045244635721 56-57 22.50747882835944 27.97959848342435 27.2137215903157 22.29920109790051 58-59 22.301128721859158 27.77278707246215 27.751978368942765 22.174105836735926 60-61 22.511585502907522 28.082733983955276 27.368970348949095 22.036710164188104 62-63 22.244216009116748 28.346638676536458 27.295265248891415 22.113880065455376 64-65 22.386083804495577 27.947158532844398 27.290322917843486 22.376434744816546 66-67 22.333676530942093 27.88454283932173 27.33197409302498 22.449806536711193 68-69 22.44530763775311 27.808187094490666 27.394174481349364 22.35233078640686 70-71 22.525053636222715 27.34517769111949 27.44668485527067 22.683083817387125 72-73 22.474528517755225 27.47349844801988 27.40665501350494 22.645318020719955 74-75 22.36968743064158 27.702474953938815 27.37053644966485 22.557301165754755 76-77 22.706442455467332 27.386170739538812 27.179779558707217 22.727607246286638 78-79 22.796827767650484 27.485000752553905 27.1233440785047 22.59482740129091 80-81 22.54814663124425 27.580064156328092 27.30542812547043 22.566361086957222 82-83 22.647709487951463 27.365753301549073 27.331335693381142 22.65520151711832 84-85 22.619642634289715 27.459877076428192 27.3992369127788 22.521243376503293 86-87 22.533306706628256 27.511899481676377 27.37331142910048 22.581482382594892 88-89 22.63650487183244 27.295570889985214 27.36831836558254 22.699605872599804 90-91 22.6637003096366 27.323246814382784 27.4347328682608 22.578320007719817 92-93 22.584760890466956 27.363293191969625 27.465030866246575 22.586915051316847 94-95 22.659703100074175 27.239488134201444 27.445659230056236 22.655149535668144 96-97 22.68333395012984 27.56521902123526 27.538813722488676 22.212633306146227 98-99 23.72799353583028 29.66031867744652 27.051464278108917 19.56022350861429 100 22.85713359285937 29.95785561637343 21.43129860202348 25.753712188743716 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1553.0 1 1383.5 2 1889.0 3 2799.0 4 4012.0 5 6548.5 6 8556.0 7 10142.0 8 11676.0 9 12195.0 10 11667.5 11 10997.0 12 11989.0 13 15080.5 14 22970.0 15 34652.0 16 44992.0 17 51449.0 18 52273.5 19 48680.0 20 43218.0 21 37177.0 22 33023.5 23 32603.5 24 35993.5 25 43314.5 26 53413.0 27 64830.0 28 77516.0 29 92151.0 30 107009.5 31 121509.5 32 136787.0 33 152063.0 34 168062.0 35 182506.5 36 197317.5 37 212283.0 38 224230.5 39 235396.5 40 245999.5 41 255234.5 42 262437.5 43 269957.0 44 278044.5 45 289455.5 46 302802.5 47 311844.0 48 311871.0 49 305923.5 50 299784.0 51 288205.0 52 272253.5 53 256267.0 54 241916.0 55 227891.0 56 211830.5 57 192438.5 58 171358.0 59 150545.5 60 127863.0 61 105769.5 62 85243.5 63 66389.5 64 50775.0 65 38284.5 66 28911.5 67 21985.0 68 16745.0 69 12257.0 70 8669.0 71 6230.0 72 4351.0 73 2962.5 74 1970.0 75 1339.0 76 875.5 77 550.0 78 349.0 79 220.5 80 156.5 81 122.0 82 88.0 83 55.5 84 34.0 85 21.5 86 16.5 87 12.5 88 8.5 89 4.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.106726359118644E-4 2 6.919526890764254E-4 3 0.004829547340084438 4 0.020744459188842223 5 0.01276582103928752 6 1.4121483450539292E-5 7 1.4121483450539292E-5 8 1.4121483450539292E-5 9 1.4121483450539292E-5 10-11 7.060741725269646E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.943223895770288E-4 24-25 0.01320113923924568 26-27 0.05628524451861843 28-29 0.08425213311596655 30-31 0.07015909003709773 32-33 0.03159147462944931 34-35 0.0034083662512254817 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 4.5667880189098515E-5 54-55 6.058738937145338E-4 56-57 7.813351563455515E-4 58-59 1.5616285380744167E-5 60-61 1.5767681503555652E-5 62-63 2.3884169421241193E-5 64-65 3.216352191851549E-5 66-67 7.317063057717724E-5 68-69 1.9736777181654006E-4 70-71 0.001271004069123681 72-73 0.0162302917436858 74-75 0.06522101040287805 76-77 0.9259744648385667 78-79 3.9322059150788307 80-81 0.0010622084096432853 82-83 0.01663446157536088 84-85 0.0482703123285414 86-87 0.0354866854978373 88-89 0.007959521391621687 90-91 5.503669204530841E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 159.0 20-21 575.0 22-23 1149.0 24-25 2289.0 26-27 3625.0 28-29 7025.0 30-31 14457.0 32-33 19133.0 34-35 27517.0 36-37 38136.0 38-39 44183.0 40-41 45982.0 42-43 55960.0 44-45 67224.0 46-47 65652.0 48-49 56842.0 50-51 50297.0 52-53 48697.0 54-55 53970.0 56-57 59668.0 58-59 60723.0 60-61 61661.0 62-63 62441.0 64-65 65421.0 66-67 71578.0 68-69 63947.0 70-71 55900.0 72-73 53064.0 74-75 54302.0 76-77 56270.0 78-79 56728.0 80-81 55961.0 82-83 55253.0 84-85 56014.0 86-87 58684.0 88-89 63403.0 90-91 65818.0 92-93 68576.0 94-95 87411.0 96-97 322539.0 98-99 1222326.0 100-101 3700849.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.89937458591761 #Duplication Level Percentage of deduplicated Percentage of total 1 90.2247263893006 77.50247569026459 2 6.970242313359884 11.974789108598271 3 1.61052213771989 4.150285331607408 4 0.5661777021228555 1.9453724206738094 5 0.24436343853166198 1.0495333270767042 6 0.12127802485739664 0.6250623891759445 7 0.0791913757974286 0.4761742757518243 8 0.041197143935633035 0.28310471190375247 9 0.0291728382905816 0.22553357076513622 >10 0.11027441336993106 1.5215259254669145 >50 0.002201377301476795 0.12900708339653946 >100 6.267574002441145E-4 0.10046354229470573 >500 2.6088012464444422E-5 0.01667262302434737 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.060741725269646E-5 0.0 0.0 0.0 3 0.0 7.060741725269646E-5 0.0 1.4121483450539292E-5 0.0 4 0.0 7.060741725269646E-5 0.0 1.4121483450539292E-5 0.0 5 0.0 8.472890070323576E-5 0.0 1.4121483450539292E-5 0.0 6 2.8242966901078583E-5 8.472890070323576E-5 0.0 1.4121483450539292E-5 1.4121483450539292E-5 7 2.8242966901078583E-5 8.472890070323576E-5 0.0 1.4121483450539292E-5 2.8242966901078583E-5 8 2.8242966901078583E-5 8.472890070323576E-5 0.0 5.6485933802157166E-5 2.8242966901078583E-5 9 5.6485933802157166E-5 1.2709335105485364E-4 0.0 8.472890070323576E-5 2.8242966901078583E-5 10-11 5.6485933802157166E-5 1.2709335105485364E-4 0.0 9.885038415377505E-5 2.8242966901078583E-5 12-13 5.6485933802157166E-5 1.2709335105485364E-4 0.0 1.0591112587904469E-4 2.8242966901078583E-5 14-15 8.472890070323576E-5 2.2594373520862867E-4 0.0 1.482755762306626E-4 5.6485933802157166E-5 16-17 1.4121483450539292E-4 2.6830818556024656E-4 0.0 1.835792848570108E-4 5.6485933802157166E-5 18-19 1.4827557623066256E-4 2.6830818556024656E-4 0.0 2.0476151003281974E-4 7.060741725269646E-5 20-21 1.553363179559322E-4 2.6830818556024656E-4 0.0 2.612474438349769E-4 7.060741725269646E-5 22-23 1.553363179559322E-4 2.9655115246132513E-4 0.0 3.3891560281294297E-4 7.76681589779661E-5 24-25 1.553363179559322E-4 3.8834079488983054E-4 0.0 4.024622783403699E-4 9.885038415377505E-5 26-27 1.553363179559322E-4 4.2364450351617877E-4 0.0 4.8719117904360556E-4 9.885038415377505E-5 28-29 1.553363179559322E-4 4.3776598696671805E-4 0.0 8.331675235818182E-4 9.885038415377505E-5 30-31 1.553363179559322E-4 5.013126624941449E-4 0.0 0.0016663350471636364 9.885038415377505E-5 32-33 1.553363179559322E-4 5.083734042194146E-4 0.0 0.0030078759749648694 9.885038415377505E-5 34-35 1.553363179559322E-4 5.57798596296302E-4 0.0 0.005076673300468876 1.1297186760431433E-4 36-37 1.553363179559322E-4 6.213452718237288E-4 0.0 0.008063367050257935 1.1297186760431433E-4 38-39 1.694578014064715E-4 6.495882387248075E-4 0.0 0.012215083184716488 1.1297186760431433E-4 40-41 1.694578014064715E-4 6.77831205625886E-4 0.0 0.0163526778357245 1.1297186760431433E-4 42-43 1.835792848570108E-4 7.554993646038521E-4 0.0 0.02037023987740293 1.1297186760431433E-4 44-45 1.835792848570108E-4 8.331675235818182E-4 0.0 0.025100936833333594 1.1297186760431433E-4 46-47 1.835792848570108E-4 8.331675235818182E-4 0.0 0.030657740571120806 1.1297186760431433E-4 48-49 1.9064002658228043E-4 8.331675235818182E-4 0.0 0.036087450957853165 1.2003260932958399E-4 50-51 2.0476151003281974E-4 9.885038415377505E-4 0.0 0.041587768761838215 1.4121483450539292E-4 52-53 2.1182225175808938E-4 0.0010026253249882898 0.0 0.046897446539240994 1.553363179559322E-4 54-55 2.1182225175808938E-4 0.0010026253249882898 0.0 0.05200236280661094 1.694578014064715E-4 56-57 2.1182225175808938E-4 0.0010238075501640986 0.0 0.057170825749508325 1.694578014064715E-4 58-59 2.1182225175808938E-4 0.001059111258790447 0.0 0.06272762948729554 1.694578014064715E-4 60-61 2.1182225175808938E-4 0.0011014757091420647 0.0 0.06853861992719246 1.694578014064715E-4 62-63 2.2594373520862867E-4 0.0011297186760431434 0.0 0.07391890512184793 2.1182225175808938E-4 64-65 2.2594373520862867E-4 0.0011862046098453005 0.0 0.0799487785552282 2.1182225175808938E-4 66-67 2.2594373520862867E-4 0.0011862046098453005 0.0 0.0851384237233014 2.1888299348335902E-4 68-69 2.3300447693389833E-4 0.0011862046098453005 0.0 0.09005976070581434 2.2594373520862867E-4 70-71 2.4006521865916797E-4 0.0011862046098453005 0.0 0.09393610791298737 2.4006521865916797E-4 72-73 2.8242966901078585E-4 0.0012073868350211095 0.0 0.09693692314622698 2.4006521865916797E-4 74-75 2.8242966901078585E-4 0.0012426905436474576 0.0 0.09964118722700524 2.471259603844376E-4 76-77 2.8242966901078585E-4 0.001292115735724345 0.0 0.10180177419493776 2.541867021097073E-4 78-79 2.8242966901078585E-4 0.0013274194443506934 0.0 0.10317155808964007 2.541867021097073E-4 80-81 2.8242966901078585E-4 0.0013274194443506934 0.0 0.10366581001040895 2.6124744383497695E-4 82-83 2.8242966901078585E-4 0.0013274194443506934 0.0 0.10402590783839769 2.6830818556024656E-4 84-85 2.8242966901078585E-4 0.0013697838947023112 0.0 0.10417418341462836 2.6830818556024656E-4 86-87 2.8242966901078585E-4 0.0013839053781528506 0.0 0.10429421602395794 2.753689272855162E-4 88 2.8242966901078585E-4 0.001454512795405547 0.0 0.10430127676568321 2.8242966901078585E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12475 0.0 50.666935 1 CTTATAC 7185 0.0 41.29479 1 GTATCAA 21770 0.0 35.404484 1 TATACAC 9585 0.0 33.366444 3 TTATACA 9685 0.0 31.069248 2 ATCAACG 25450 0.0 29.756672 3 TCAACGC 26325 0.0 28.797707 4 AACGCAG 26995 0.0 28.041332 6 CAACGCA 27025 0.0 28.02931 5 TATCAAC 27480 0.0 27.78789 2 ACGCAGA 27495 0.0 27.577232 7 ACACATC 10985 0.0 26.80681 6 ACATCTC 12280 0.0 24.116703 8 CGCAGAG 31550 0.0 24.019522 8 TACACAT 13085 0.0 23.791777 5 ATACACA 15180 0.0 22.451162 4 CACATCT 13585 0.0 21.67632 7 GCAGAGT 36020 0.0 21.062078 9 GAGTACT 21900 0.0 20.783178 12-13 GTACATG 23865 0.0 20.25134 1 >>END_MODULE