##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138778_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6492118 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83746752600615 33.0 33.0 33.0 33.0 33.0 2 32.83422898351509 33.0 33.0 33.0 33.0 33.0 3 32.83256142294395 33.0 33.0 33.0 33.0 33.0 4 36.783324332675406 37.0 37.0 37.0 37.0 37.0 5 36.794358019986696 37.0 37.0 37.0 37.0 37.0 6 36.804242313525414 37.0 37.0 37.0 37.0 37.0 7 36.7907561137983 37.0 37.0 37.0 37.0 37.0 8 36.7857067601051 37.0 37.0 37.0 37.0 37.0 9 36.785671332529695 37.0 37.0 37.0 37.0 37.0 10-11 36.76551204090868 37.0 37.0 37.0 37.0 37.0 12-13 36.75261001109345 37.0 37.0 37.0 37.0 37.0 14-15 39.11420502523214 40.0 40.0 40.0 37.0 40.0 16-17 39.07443803393592 40.0 40.0 40.0 37.0 40.0 18-19 39.05500608584133 40.0 40.0 40.0 37.0 40.0 20-21 39.10169378879064 40.0 40.0 40.0 37.0 40.0 22-23 39.13297428677805 40.0 40.0 40.0 37.0 40.0 24-25 39.13794988672665 40.0 40.0 40.0 37.0 40.0 26-27 38.87350847795004 40.0 40.0 40.0 37.0 40.0 28-29 38.87583592237467 40.0 40.0 40.0 37.0 40.0 30-31 38.88849363684881 40.0 40.0 40.0 37.0 40.0 32-33 38.87981850530004 40.0 40.0 40.0 37.0 40.0 34-35 38.85973129209968 40.0 40.0 40.0 37.0 40.0 36-37 38.82192954837447 40.0 40.0 40.0 37.0 40.0 38-39 38.77769853977183 40.0 37.0 40.0 37.0 40.0 40-41 38.7329730606959 40.0 37.0 40.0 37.0 40.0 42-43 38.674734393437774 40.0 37.0 40.0 37.0 40.0 44-45 38.605926732908316 40.0 37.0 40.0 37.0 40.0 46-47 38.527042160262006 40.0 37.0 40.0 37.0 40.0 48-49 38.46945167185593 40.0 37.0 40.0 37.0 40.0 50-51 38.40913024027887 40.0 37.0 40.0 37.0 40.0 52-53 38.34178014746571 40.0 37.0 40.0 37.0 40.0 54-55 38.269405671588075 40.0 37.0 40.0 37.0 40.0 56-57 38.16255704124572 40.0 37.0 40.0 37.0 40.0 58-59 38.03121256588631 40.0 37.0 40.0 37.0 40.0 60-61 37.86617150058649 40.0 37.0 40.0 35.0 40.0 62-63 37.6806511971474 38.5 37.0 40.0 33.0 40.0 64-65 37.471535198355255 37.0 37.0 40.0 33.0 40.0 66-67 37.2465352511142 37.0 37.0 40.0 33.0 40.0 68-69 36.99423274789889 37.0 37.0 40.0 33.0 40.0 70-71 36.745818199162265 37.0 37.0 40.0 33.0 40.0 72-73 36.50556802021465 37.0 37.0 37.0 33.0 40.0 74-75 36.24704056859014 37.0 37.0 37.0 33.0 40.0 76-77 34.552606105861585 35.0 33.0 37.0 30.0 37.0 78-79 31.433463739299533 37.0 33.0 37.0 10.5 37.0 80-81 34.51777297509898 37.0 33.0 37.0 30.0 37.0 82-83 35.56136568416535 37.0 35.0 37.0 33.0 37.0 84-85 35.684787597655955 37.0 37.0 37.0 33.0 37.0 86-87 35.65167226810339 37.0 37.0 37.0 33.0 37.0 88-89 35.57469033903148 37.0 37.0 37.0 33.0 37.0 90-91 35.507428857291266 37.0 35.0 37.0 33.0 37.0 92-93 35.438091150418046 37.0 33.0 37.0 33.0 37.0 94-95 35.393447140862996 37.0 33.0 37.0 33.0 37.0 96-97 35.37244481941191 37.0 33.0 37.0 33.0 37.0 98-99 35.33651836321067 37.0 33.0 37.0 33.0 37.0 100 35.289021806308654 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 18.0 21 85.0 22 399.0 23 1130.0 24 2686.0 25 5558.0 26 10161.0 27 17088.0 28 25586.0 29 36606.0 30 51086.0 31 68771.0 32 92406.0 33 127897.0 34 186153.0 35 300993.0 36 662368.0 37 2054444.0 38 2717138.0 39 131540.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93190881619835 19.795727680858544 14.451678173440472 23.820685329502638 2 14.677290215612224 20.669926208981416 41.623504070628414 23.029279504777946 3 18.17529977193827 25.716986578461025 30.516418257137673 25.591295392463024 4 12.496171398109889 18.170159399256157 38.19346996126718 31.140199241366773 5 13.591447313689905 37.23653763792046 35.24068488043555 13.931330167954078 6 30.159972446588306 37.30335770237078 18.613093600578424 13.923576250462483 7 26.64657358353622 32.6564766690932 22.37428524866615 18.32266449870443 8 24.629866555105746 36.12505194760786 20.961017652482596 18.284063844803807 9 25.56752665308918 16.86508162667407 20.866549252493563 36.70084246774319 10-11 24.19133478473435 26.645179585460397 28.474228287286213 20.689257342519035 12-13 25.27719767262394 24.224852351728664 28.547455545324347 21.950494430323047 14-15 22.397844586312203 25.592079503176006 26.36720404650686 25.642871864004935 16-17 21.85771269098929 28.831307440807453 26.998662069913088 22.312317798290174 18-19 21.97411538114372 27.62580717109578 28.900167865094257 21.499909582666245 20-21 22.616951906389954 26.770782573709422 29.017503169865105 21.594762350035516 22-23 22.241465284616833 26.880927832431155 28.924779831894455 21.952827051057557 24-25 22.1775597119349 26.98270496871775 28.930612934207506 21.909122385139842 26-27 22.154465197924452 27.113935502683795 28.8942150782818 21.83738422110995 28-29 21.889516975825835 27.0474137515259 29.01980291156146 22.043266361086804 30-31 22.161600303303572 26.992766413764347 28.97988219177617 21.865751091155914 32-33 21.80473166511301 27.000690924040683 29.140853095032504 22.053724315813803 34-35 21.926545631523304 27.158026642542694 28.898797294616855 22.016630431317147 36-37 22.00132562876834 27.174883548006225 28.896409767100685 21.927381056124748 38-39 21.89255201112177 27.11633594357419 28.921140820813097 22.06997122449095 40-41 22.141393695364396 27.01884909337241 28.851073870530907 21.98868334073229 42-43 22.163205023494864 27.107176243267133 28.64738944312897 22.082229290109034 44-45 22.0989722584356 27.340545459375736 28.425629171229126 22.134853110959536 46-47 22.41003416057068 27.239277367446174 27.880759778154268 22.469928693828876 48-49 22.264608233948383 27.37074464163016 27.871793901373497 22.492853223047955 50-51 22.198961482006936 27.579582693164994 27.84187250667402 22.379583318154047 52-53 22.339071083994906 27.558318095449064 27.89209216972533 22.2105186508307 54-55 22.272063164638244 27.513438192659688 27.719474066453937 22.49502457624813 56-57 22.463350729820977 27.756181318912525 27.437348574644936 22.34311937662156 58-59 22.224265497143648 27.887425513502293 27.754301341336408 22.13400764801765 60-61 22.477386287239213 28.010224571180682 27.374576903070967 22.137812238509134 62-63 22.238486898254642 28.195875598131614 27.377468636577547 22.1881688670362 64-65 22.269752567319067 28.038072739834536 27.367272308545864 22.324902384300536 66-67 22.35567455803761 27.962203130633227 27.271800339270463 22.4103219720587 68-69 22.37999529928578 27.770578071177077 27.39949952266999 22.449927106867147 70-71 22.36309474089484 27.57299921946067 27.4746158377104 22.589290201934094 72-73 22.436850249231405 27.589567989223678 27.3918303774905 22.581751384054417 74-75 22.327095050419217 27.715501718925385 27.356241051315173 22.60116217934022 76-77 22.47131949829232 27.674093988920532 27.288706020715548 22.5658804920716 78-79 22.91821691250531 27.585810058855998 26.930621558601274 22.565351470037413 80-81 22.426902679359248 27.715660433373063 27.279040336383144 22.57839655088455 82-83 22.474361815249434 27.702060402343818 27.321268174961723 22.502309607445024 84-85 22.549464979188553 27.66324882815528 27.286324886648295 22.500961306007873 86-87 22.43147475303172 27.666898599908578 27.38748577982281 22.514140867236886 88-89 22.483096380055276 27.671287622646528 27.304633551513763 22.54098244578443 90-91 22.508389492782772 27.677098819277045 27.311442590027447 22.503069097912736 92-93 22.5389241567984 27.650781916820392 27.33254724585071 22.4777466805305 94-95 22.433625363851114 27.71817857898013 27.34709666182862 22.50109939534014 96-97 22.51800273295862 27.825631156632564 27.386545121459232 22.269820988949583 98-99 23.648157285290733 29.74007298848276 27.569543533051515 19.042226193175 100 22.471753820645688 30.733108525388126 21.49154341734284 25.30359423662335 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1936.0 1 1725.5 2 2044.0 3 2764.5 4 3744.5 5 5844.5 6 7593.5 7 8919.5 8 10067.0 9 10421.0 10 10038.0 11 9706.0 12 10823.0 13 13949.5 14 21114.5 15 30863.5 16 38826.5 17 43817.0 18 45169.5 19 42677.0 20 38202.0 21 33428.0 22 30179.0 23 30284.5 24 33666.5 25 40185.0 26 49174.5 27 59763.5 28 71710.5 29 85125.5 30 98546.5 31 112308.5 32 127134.5 33 141621.5 34 155438.0 35 168834.0 36 183053.0 37 196694.5 38 208236.0 39 218506.5 40 229386.5 41 238076.0 42 243394.5 43 249117.5 44 254487.0 45 259603.5 46 266019.5 47 272904.5 48 280918.0 49 280218.5 50 271874.5 51 263559.0 52 252129.5 53 237799.5 54 222330.0 55 207757.0 56 191557.5 57 173649.5 58 155067.5 59 135383.5 60 114337.0 61 93601.5 62 75116.0 63 58901.0 64 44720.5 65 33432.5 66 24874.0 67 18687.0 68 14300.5 69 10537.5 70 7602.5 71 5475.5 72 3860.0 73 2645.5 74 1813.5 75 1213.0 76 787.5 77 496.0 78 317.5 79 211.0 80 150.0 81 115.0 82 88.0 83 61.5 84 38.0 85 21.0 86 15.0 87 13.0 88 10.0 89 8.0 90 6.0 91 4.5 92 3.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.4645269848761224E-4 4 0.023074133895902692 5 0.01629668468749336 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008551172527532465 26-27 0.05286384485216734 28-29 0.08558309575029042 30-31 0.07601525677456644 32-33 0.036192894280548074 34-35 0.004429186461613692 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.7556525700890316E-4 56-57 7.6585253736624E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 1.798270225887017E-5 72-73 0.013298072577723426 74-75 0.02760317521602664 76-77 0.001061434734870217 78-79 4.973765489455475 80-81 0.0 82-83 0.012866665572304255 84-85 0.04977244692343643 86-87 0.03893375837228079 88-89 0.01008778028990308 90-91 3.9483434280958784E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 69.0 20-21 348.0 22-23 900.0 24-25 1808.0 26-27 2903.0 28-29 5521.0 30-31 12830.0 32-33 16620.0 34-35 23097.0 36-37 33455.0 38-39 40023.0 40-41 41861.0 42-43 49650.0 44-45 60215.0 46-47 59370.0 48-49 51759.0 50-51 45297.0 52-53 43699.0 54-55 48492.0 56-57 51689.0 58-59 52905.0 60-61 51865.0 62-63 52640.0 64-65 55698.0 66-67 60976.0 68-69 54931.0 70-71 49607.0 72-73 47124.0 74-75 48034.0 76-77 48938.0 78-79 48735.0 80-81 49469.0 82-83 48703.0 84-85 48840.0 86-87 50652.0 88-89 53871.0 90-91 56112.0 92-93 58161.0 94-95 69567.0 96-97 204946.0 98-99 391661.0 100-101 4299077.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.36040556504283 #Duplication Level Percentage of deduplicated Percentage of total 1 91.80406440093816 81.11844362986206 2 6.085826967378364 10.754922780724538 3 1.2463905788098266 3.3039473110825424 4 0.39858991660199317 1.4087826674035484 5 0.17641884029336258 0.7794220138818018 6 0.0903967986507439 0.47924986743367487 7 0.05653325233641976 0.34967107730498675 8 0.03040840799203758 0.2149519410210984 9 0.021318872895532456 0.16953698297149622 >10 0.08775877612070776 1.2351781884210777 >50 0.0017835799685193777 0.09962566113607826 >100 4.8407138567714856E-4 0.07096930464912794 >500 2.5536628596837004E-5 0.015298574107955033 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.540329365547576E-5 0.0 2 0.0 1.540329365547576E-5 0.0 1.540329365547576E-5 0.0 3 0.0 1.540329365547576E-5 0.0 3.080658731095152E-5 0.0 4 0.0 4.620988096642729E-5 0.0 3.080658731095152E-5 0.0 5 0.0 4.620988096642729E-5 0.0 3.080658731095152E-5 0.0 6 0.0 4.620988096642729E-5 0.0 3.080658731095152E-5 0.0 7 0.0 4.620988096642729E-5 0.0 3.080658731095152E-5 0.0 8 0.0 6.161317462190305E-5 0.0 3.080658731095152E-5 0.0 9 0.0 7.701646827737881E-5 0.0 3.080658731095152E-5 0.0 10-11 0.0 7.701646827737881E-5 0.0 3.080658731095152E-5 0.0 12-13 0.0 7.701646827737881E-5 0.0 3.8508234138689405E-5 7.70164682773788E-6 14-15 0.0 1.0782305558833034E-4 0.0 4.620988096642729E-5 3.080658731095152E-5 16-17 0.0 1.0782305558833034E-4 0.0 5.391152779416516E-5 4.620988096642729E-5 18-19 0.0 1.0782305558833034E-4 0.0 6.161317462190305E-5 5.391152779416516E-5 20-21 0.0 1.1552470241606822E-4 0.0 6.161317462190305E-5 7.701646827737881E-5 22-23 7.70164682773788E-6 1.4633128972701975E-4 0.0 7.701646827737881E-5 7.701646827737881E-5 24-25 1.540329365547576E-5 1.5403293655475762E-4 0.0 1.1552470241606822E-4 7.701646827737881E-5 26-27 1.540329365547576E-5 1.5403293655475762E-4 0.0 1.5403293655475762E-4 7.701646827737881E-5 28-29 1.540329365547576E-5 1.5403293655475762E-4 0.0 3.5427575407594256E-4 7.701646827737881E-5 30-31 1.540329365547576E-5 1.7713787703797128E-4 0.0 9.78109147122711E-4 7.701646827737881E-5 32-33 1.540329365547576E-5 1.8483952386570915E-4 0.0 0.002202670992733034 7.701646827737881E-5 34-35 1.540329365547576E-5 2.0024281752118492E-4 0.0 0.003958646469457271 7.701646827737881E-5 36-37 1.540329365547576E-5 2.3875105165987431E-4 0.0 0.006315350398745063 7.701646827737881E-5 38-39 1.540329365547576E-5 2.464526984876122E-4 0.0 0.009881212879987701 7.701646827737881E-5 40-41 1.540329365547576E-5 3.2346916676499103E-4 0.0 0.013878367583583663 7.701646827737881E-5 42-43 1.540329365547576E-5 3.3887246042046677E-4 0.0 0.0173826168902044 7.701646827737881E-5 44-45 1.540329365547576E-5 3.850823413868941E-4 0.0 0.02137206994697262 7.701646827737881E-5 46-47 1.540329365547576E-5 4.158889286978456E-4 0.0 0.02613168768651463 7.701646827737881E-5 48-49 1.540329365547576E-5 4.235905755255835E-4 0.0 0.03115316141819973 7.701646827737881E-5 50-51 1.540329365547576E-5 5.006070438029623E-4 0.0 0.03561241493145996 7.701646827737881E-5 52-53 1.540329365547576E-5 5.083086906307002E-4 0.0 0.039909933861337704 9.241976193285458E-5 54-55 1.540329365547576E-5 5.083086906307002E-4 0.0 0.04493910923985053 1.0782305558833034E-4 56-57 1.540329365547576E-5 5.083086906307002E-4 0.0 0.050114615908090396 1.232263492438061E-4 58-59 1.540329365547576E-5 5.16010337458438E-4 0.0 0.05496665340956526 1.3862964289928186E-4 60-61 1.540329365547576E-5 5.314136311139138E-4 0.0 0.05978788432372917 1.5403293655475762E-4 62-63 1.540329365547576E-5 5.545185715971274E-4 0.0 0.0644704855949938 1.6943623021023339E-4 64-65 1.540329365547576E-5 6.777449208409335E-4 0.0 0.0689836506360482 1.6943623021023339E-4 66-67 1.540329365547576E-5 6.777449208409335E-4 0.0 0.07312713662937119 1.6943623021023339E-4 68-69 1.540329365547576E-5 6.931482144964093E-4 0.0 0.07764800331725333 1.6943623021023339E-4 70-71 1.540329365547576E-5 6.931482144964093E-4 0.0 0.08174527942960988 1.6943623021023339E-4 72-73 2.310494048321364E-5 6.931482144964093E-4 0.0 0.08481053486704955 1.6943623021023339E-4 74-75 3.080658731095152E-5 7.239548018073609E-4 0.0 0.08733667502654757 1.7713787703797128E-4 76-77 3.080658731095152E-5 7.547613891183124E-4 0.0 0.08967797566217989 1.8483952386570915E-4 78-79 3.080658731095152E-5 7.701646827737882E-4 0.0 0.09123370832138294 1.8483952386570915E-4 80-81 3.080658731095152E-5 7.701646827737882E-4 0.0 0.09176512195249686 1.8483952386570915E-4 82-83 3.080658731095152E-5 7.701646827737882E-4 0.0 0.0923427454645772 1.8483952386570915E-4 84-85 3.080658731095152E-5 7.701646827737882E-4 0.0 0.09262000475037577 1.8483952386570915E-4 86-87 3.080658731095152E-5 7.701646827737882E-4 0.0 0.09268161792499767 1.8483952386570915E-4 88 3.080658731095152E-5 8.163745637402155E-4 0.0 0.09268161792499767 1.8483952386570915E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9285 0.0 52.046913 1 GTATCAA 17545 0.0 39.17927 1 CTTATAC 5345 0.0 38.114357 1 TCAACGC 21825 0.0 30.990973 4 ATCAACG 21920 0.0 30.857136 3 TATCAAC 22520 0.0 30.204273 2 CAACGCA 22375 0.0 30.200945 5 AACGCAG 22905 0.0 29.533861 6 TATACAC 8375 0.0 27.81436 3 TTATACA 7865 0.0 27.033121 2 ACGCAGA 25975 0.0 26.026941 7 CGCAGAG 26385 0.0 25.654593 8 GCAGAGT 30460 0.0 22.236366 9 GTGGTAT 4365 0.0 22.21992 1 ACATCTC 9170 0.0 21.92795 8 ACACATC 9355 0.0 21.76582 6 TACACAT 10910 0.0 20.995354 5 TGGTATC 4280 0.0 20.978928 2 GAGTACT 18730 0.0 20.307388 12-13 GTACATG 20320 0.0 19.96793 1 >>END_MODULE