##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138777_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6350873 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.89580660800492 33.0 33.0 33.0 33.0 33.0 2 32.950717484037234 33.0 33.0 33.0 33.0 33.0 3 33.61440718465005 33.0 33.0 33.0 33.0 37.0 4 36.7835381057061 37.0 37.0 37.0 37.0 37.0 5 36.79604063882241 37.0 37.0 37.0 37.0 37.0 6 36.80007551717693 37.0 37.0 37.0 37.0 37.0 7 36.79114084000735 37.0 37.0 37.0 37.0 37.0 8 36.78014093495493 37.0 37.0 37.0 37.0 37.0 9 36.78553483906858 37.0 37.0 37.0 37.0 37.0 10-11 36.778319610548024 37.0 37.0 37.0 37.0 37.0 12-13 37.03033874240597 37.0 37.0 37.0 37.0 38.5 14-15 39.10851075119909 40.0 40.0 40.0 37.0 40.0 16-17 39.06768187617671 40.0 40.0 40.0 37.0 40.0 18-19 39.049914633783416 40.0 40.0 40.0 37.0 40.0 20-21 39.10969931433446 40.0 40.0 40.0 37.0 40.0 22-23 39.13908459858507 40.0 40.0 40.0 37.0 40.0 24-25 39.12358778338149 40.0 40.0 40.0 37.0 40.0 26-27 38.85984745568779 40.0 40.0 40.0 37.0 40.0 28-29 38.88747023213398 40.0 40.0 40.0 37.0 40.0 30-31 38.89600222810972 40.0 40.0 40.0 37.0 40.0 32-33 38.87597450416446 40.0 40.0 40.0 37.0 40.0 34-35 38.849063430796264 40.0 40.0 40.0 37.0 40.0 36-37 38.81901400689548 40.0 38.5 40.0 37.0 40.0 38-39 38.77187644463074 40.0 37.0 40.0 37.0 40.0 40-41 38.72737274574834 40.0 37.0 40.0 37.0 40.0 42-43 38.66614962604097 40.0 37.0 40.0 37.0 40.0 44-45 38.59334887916704 40.0 37.0 40.0 37.0 40.0 46-47 38.51546703861938 40.0 37.0 40.0 37.0 40.0 48-49 38.462354720478814 40.0 37.0 40.0 37.0 40.0 50-51 38.400720220583835 40.0 37.0 40.0 37.0 40.0 52-53 38.33595873698533 40.0 37.0 40.0 37.0 40.0 54-55 38.24678273790031 40.0 37.0 40.0 37.0 40.0 56-57 38.13680000317892 40.0 37.0 40.0 37.0 40.0 58-59 38.00403741777414 40.0 37.0 40.0 37.0 40.0 60-61 37.83915546549963 40.0 37.0 40.0 33.0 40.0 62-63 37.64890044936911 38.5 37.0 40.0 33.0 40.0 64-65 37.43495210489776 37.0 37.0 40.0 33.0 40.0 66-67 37.20154338065014 37.0 37.0 40.0 33.0 40.0 68-69 36.950326098646975 37.0 37.0 40.0 33.0 40.0 70-71 36.7026062572849 37.0 37.0 40.0 33.0 40.0 72-73 36.456228217242156 37.0 37.0 37.0 33.0 40.0 74-75 35.979900845729006 37.0 37.0 37.0 33.0 40.0 76-77 34.15881686064132 37.0 33.0 37.0 27.0 37.0 78-79 31.85428740954585 37.0 33.0 37.0 10.5 37.0 80-81 34.67987014892411 37.0 33.0 37.0 30.0 37.0 82-83 35.58318210402511 37.0 35.0 37.0 33.0 37.0 84-85 35.68305834356751 37.0 37.0 37.0 33.0 37.0 86-87 35.6464063106486 37.0 37.0 37.0 33.0 37.0 88-89 35.57444867706988 37.0 37.0 37.0 33.0 37.0 90-91 35.50606619445552 37.0 35.0 37.0 33.0 37.0 92-93 35.43971779007707 37.0 33.0 37.0 33.0 37.0 94-95 35.39655245935077 37.0 33.0 37.0 33.0 37.0 96-97 35.37224475975225 37.0 33.0 37.0 33.0 37.0 98-99 35.326842091128384 37.0 33.0 37.0 33.0 37.0 100 35.26361562682829 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 0.0 18 2.0 19 6.0 20 29.0 21 92.0 22 356.0 23 1033.0 24 2556.0 25 5513.0 26 9924.0 27 16457.0 28 24824.0 29 35507.0 30 49309.0 31 66992.0 32 89877.0 33 124255.0 34 180809.0 35 293300.0 36 643387.0 37 1987076.0 38 2665861.0 39 153706.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.9348714669532 0.0 24.307239164730053 29.757889368316746 2 15.139294369508494 23.660179274176876 38.310750199462085 22.889776156852545 3 16.759750673014057 24.14432419562695 32.85417167936691 26.241753451992082 4 13.190133323169858 23.113507227459525 36.63525543764314 27.061104011727476 5 17.640676210855734 35.739748143771344 32.03658220855147 14.582993436821454 6 28.381231997553723 36.86894699358655 19.972561252602596 14.777259756257132 7 26.464235704288214 32.64535442607654 22.00755707128768 18.882852798347567 8 24.445442382488203 31.925705332164572 21.733248326647374 21.89560395869985 9 23.949416088150404 20.276409243264666 23.357828128510835 32.416346540074095 10-11 24.78417534093344 25.894928146098966 28.13893460001483 21.181961912952755 12-13 25.216202559868538 23.98741873754994 28.146177698719534 22.650201003861987 14-15 22.68780213365942 26.23190544040166 26.282866938135907 24.797425487803014 16-17 21.80795186928282 28.69878567059655 27.163760123315363 22.32950233680527 18-19 21.87322194650324 27.50863050978602 29.13623415876611 21.481913384944633 20-21 22.50969736535881 26.765515705842542 29.13246961670646 21.59231731209219 22-23 22.42513522123654 26.599304992685997 28.95089548292489 22.024664303152573 24-25 22.17002346384292 26.848480599993856 29.143471278255657 21.838024657907567 26-27 22.095351454037747 27.120392394112514 28.908702155290484 21.875553996559262 28-29 21.914802753528758 26.86629773805785 29.231931535585453 21.986967972827944 30-31 22.101054963146307 26.77609236734728 29.005945891682742 22.116906777823665 32-33 22.018249896343374 27.062703554710126 29.09477697208709 21.824269576859407 34-35 22.238261562903507 27.013521045188494 28.878112250261317 21.870105141646683 36-37 22.027778620944762 27.052132337434948 28.889091780093874 22.03099726152642 38-39 21.96107655133989 27.17797465835181 28.964874449508272 21.896074340800027 40-41 22.230898128890754 26.86591257234021 28.740924364639003 22.162264934130032 42-43 22.218678546568647 26.951959260648884 28.69432178933175 22.13504040345072 44-45 22.174781134578687 27.354492371444717 28.354516940060766 22.116209553915827 46-47 22.449490525860284 27.04350830911224 27.9380552096975 22.568945955329973 48-49 22.288845079664288 27.298017607078563 28.0248908375321 22.388246475725047 50-51 22.298005509923804 27.613691623700515 27.71343211830766 22.37487074806802 52-53 22.46252629638764 27.38848945444168 27.776217306658125 22.372766942512552 54-55 22.335251200378853 27.44309801485941 27.78266614583551 22.43898463892623 56-57 22.49680071712861 27.85233607298353 27.344361359226426 22.306501850661427 58-59 22.40050422553056 27.655081025507688 27.676241048376156 22.26817370058559 60-61 22.496650608704023 27.83654356672665 27.483098277484718 22.18370754708461 62-63 22.308686650622878 28.136997451868627 27.346439694224234 22.207876203284258 64-65 22.455929982611725 27.780572897949344 27.304674299056032 22.4588228203829 66-67 22.373840149015052 27.77623102419709 27.370557694404603 22.479371132383257 68-69 22.471757728127905 27.73358924080318 27.39146277951751 22.403190251551404 70-71 22.511273228529145 27.32307379115751 27.457670576461695 22.70798240385165 72-73 22.452276891087457 27.41165928578474 27.480935740167695 22.65512808296011 74-75 22.393190279703692 27.67613325795313 27.37715323464527 22.553523227697912 76-77 22.72075374637507 27.398350511725035 27.172940489864516 22.707955252035376 78-79 22.789141749011996 27.442128308807014 27.12519936045603 22.643530581724963 80-81 22.52450644588296 27.582568998845797 27.27910742148387 22.61381713378737 82-83 22.626071702459214 27.376878607313575 27.347200243658587 22.649849446568624 84-85 22.630525773518304 27.385475781199442 27.407270154435164 22.576728290847093 86-87 22.51328198694492 27.470811114745302 27.387556902049365 22.628349996260415 88-89 22.652557195303423 27.27146345196899 27.350589581508792 22.725389771218786 90-91 22.667636011787312 27.30502626229309 27.41268125206785 22.61465647385175 92-93 22.583370058722252 27.40294014145304 27.412241394336945 22.60144840548776 94-95 22.633251264739677 27.266230760780548 27.39408700034518 22.706430974134598 96-97 22.703687028738166 27.54748949016167 27.521297343209895 22.227526137890273 98-99 23.80087140490782 29.590669288981537 27.033841717554292 19.57461758855635 100 22.875418396477013 29.88831406164748 21.40716872052699 25.829098821348513 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1348.0 1 1228.0 2 1669.5 3 2425.5 4 3431.5 5 5555.5 6 7345.5 7 8871.0 8 10353.0 9 10923.0 10 10477.0 11 9705.5 12 10437.0 13 13246.5 14 20143.0 15 30171.0 16 39089.5 17 44810.0 18 45804.5 19 42433.5 20 37228.5 21 32170.5 22 28849.5 23 28993.0 24 32597.0 25 39202.5 26 48254.0 27 58494.5 28 69550.0 29 82443.5 30 96025.0 31 109532.5 32 123416.5 33 137090.5 34 150443.5 35 163688.5 36 177670.5 37 190862.5 38 202068.0 39 211687.5 40 221045.5 41 230098.5 42 236142.0 43 241340.5 44 247036.0 45 252494.5 46 258173.5 47 263818.5 48 271501.0 49 271831.0 50 265178.5 51 258949.5 52 248957.5 53 235654.0 54 221884.0 55 208100.5 56 192388.5 57 175013.0 58 156276.0 59 136429.0 60 115969.5 61 96249.0 62 77562.5 63 60625.5 64 46348.5 65 34852.0 66 26169.0 67 19931.5 68 15276.5 69 10993.5 70 7784.5 71 5727.5 72 4079.5 73 2814.0 74 1915.5 75 1266.5 76 828.0 77 523.0 78 351.5 79 240.5 80 150.5 81 103.0 82 79.5 83 54.5 84 34.5 85 28.0 86 25.0 87 19.0 88 13.0 89 9.0 90 4.5 91 2.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.5193386798948744E-4 2 6.613264034724045E-4 3 0.005306357094528579 4 0.02108371557737023 5 0.01418702594115801 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 2.3618800124014444E-5 18-19 3.936466687335741E-5 20-21 7.873149081699511E-5 22-23 5.19670144887186E-4 24-25 0.013073141074155425 26-27 0.05551760019008495 28-29 0.08412586939064634 30-31 0.06992967805275997 32-33 0.03198089404594538 34-35 0.003577980457721282 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 2.5434777853498055E-5 54-55 4.954306347141242E-4 56-57 6.718513492713126E-4 58-59 0.0 60-61 8.76861313510188E-6 62-63 0.0 64-65 0.0 66-67 5.4113798612792774E-5 68-69 1.91401602031409E-4 70-71 0.0015737222617646781 72-73 0.017550545571245187 74-75 0.06673816760771262 76-77 0.9255388567559315 78-79 3.944093999630659 80-81 0.0010316468767228263 82-83 0.016618289951678453 84-85 0.048168316218508 86-87 0.03501965846946518 88-89 0.008049479609172672 90-91 2.031034202615972E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 101.0 20-21 418.0 22-23 885.0 24-25 2143.0 26-27 3175.0 28-29 6247.0 30-31 13120.0 32-33 16916.0 34-35 24146.0 36-37 33311.0 38-39 39283.0 40-41 41490.0 42-43 49936.0 44-45 59518.0 46-47 57788.0 48-49 50216.0 50-51 44265.0 52-53 42899.0 54-55 47140.0 56-57 50994.0 58-59 51603.0 60-61 51055.0 62-63 51124.0 64-65 54009.0 66-67 59057.0 68-69 54538.0 70-71 49165.0 72-73 47678.0 74-75 48824.0 76-77 50407.0 78-79 50873.0 80-81 50254.0 82-83 49624.0 84-85 50011.0 86-87 52879.0 88-89 57308.0 90-91 58756.0 92-93 60948.0 94-95 78948.0 96-97 292200.0 98-99 1100915.0 100-101 3346706.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.13328695774445 #Duplication Level Percentage of deduplicated Percentage of total 1 90.99637738823697 79.2881346308446 2 6.540486452002534 11.397881657311533 3 1.4211901709570463 3.7149891296257858 4 0.48859164258741306 1.702903831948991 5 0.2094751678627561 0.9126129955953607 6 0.11540973278919091 0.6033617618902307 7 0.0625372822671034 0.38143552729358887 8 0.04113764969252556 0.28675669083407984 9 0.03073762187716771 0.2410443024679708 >10 0.0918260241284058 1.2755712720803196 >50 0.001700566540056147 0.09628992412919078 >100 5.030914451638442E-4 0.08389216954589891 >500 2.720961368472551E-5 0.015126106432539562 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5745866749342965E-5 2 0.0 1.5745866749342965E-5 0.0 0.0 1.5745866749342965E-5 3 0.0 1.5745866749342965E-5 0.0 0.0 1.5745866749342965E-5 4 0.0 1.5745866749342965E-5 0.0 0.0 1.5745866749342965E-5 5 0.0 1.5745866749342965E-5 0.0 0.0 1.5745866749342965E-5 6 0.0 1.5745866749342965E-5 0.0 0.0 1.5745866749342965E-5 7 0.0 1.5745866749342965E-5 0.0 1.5745866749342965E-5 1.5745866749342965E-5 8 0.0 6.298346699737186E-5 0.0 1.5745866749342965E-5 1.5745866749342965E-5 9 1.5745866749342965E-5 1.1022106724540075E-4 0.0 3.149173349868593E-5 1.5745866749342965E-5 10-11 1.5745866749342965E-5 1.1022106724540075E-4 0.0 4.7237600248028896E-5 1.5745866749342965E-5 12-13 1.5745866749342965E-5 1.1022106724540075E-4 0.0 4.7237600248028896E-5 1.5745866749342965E-5 14-15 1.5745866749342965E-5 2.2044213449080153E-4 0.0 5.511053362270038E-5 4.7237600248028896E-5 16-17 1.5745866749342965E-5 2.5193386798948744E-4 0.0 6.298346699737186E-5 6.298346699737186E-5 18-19 1.5745866749342965E-5 2.5193386798948744E-4 0.0 7.872933374671482E-5 7.872933374671482E-5 20-21 1.5745866749342965E-5 2.5193386798948744E-4 0.0 1.1022106724540076E-4 7.872933374671482E-5 22-23 1.5745866749342965E-5 2.8342560148817336E-4 0.0 1.5745866749342964E-4 9.447520049605778E-5 24-25 2.3618800124014448E-5 3.3066320173620226E-4 0.0 1.8895040099211558E-4 1.1022106724540075E-4 26-27 3.149173349868593E-5 3.7790080198423116E-4 0.0 2.676797347388304E-4 1.2596693399474372E-4 28-29 3.149173349868593E-5 3.936466687335741E-4 0.0 4.56630135730946E-4 1.2596693399474372E-4 30-31 3.149173349868593E-5 4.2513840223226E-4 0.0 0.0012990340068207945 1.2596693399474372E-4 32-33 4.7237600248028896E-5 4.2513840223226E-4 0.0 0.002747653747760347 1.4171280074408668E-4 34-35 6.298346699737186E-5 4.8812186922963185E-4 0.0 0.004810362291924275 1.5745866749342964E-4 36-37 7.872933374671482E-5 5.353594694776607E-4 0.0 0.007802076974299439 1.5745866749342964E-4 38-39 7.872933374671482E-5 5.511053362270038E-4 0.0 0.011785781261883208 1.7320453424277262E-4 40-41 9.447520049605779E-5 6.140888032243756E-4 0.0 0.016084402884453838 2.1256920111613E-4 42-43 9.447520049605779E-5 7.243098704697764E-4 0.0 0.02031216810665242 2.28315067865473E-4 44-45 9.447520049605779E-5 8.345309377151771E-4 0.0 0.025028055198080643 2.3618800124014446E-4 46-47 1.0234813387072927E-4 8.345309377151771E-4 0.0 0.030310793492485208 2.8342560148817336E-4 48-49 1.1022106724540075E-4 8.345309377151771E-4 0.0 0.03521563098490554 3.3066320173620226E-4 50-51 1.1022106724540075E-4 9.368790715859064E-4 0.0 0.04058497154643149 3.3066320173620226E-4 52-53 1.1022106724540075E-4 9.604978717099209E-4 0.0 0.04611177077545087 3.542820018602167E-4 54-55 1.1022106724540075E-4 9.683708050845924E-4 0.0 0.051835393338837035 3.7790080198423116E-4 56-57 1.1022106724540075E-4 9.762437384592638E-4 0.0 0.05753539710209919 3.7790080198423116E-4 58-59 1.1022106724540075E-4 9.762437384592638E-4 0.0 0.0635503182003482 3.9364666873357415E-4 60-61 1.1022106724540075E-4 0.001015608405332621 0.0 0.06937628889760511 4.093925354829171E-4 62-63 1.1022106724540075E-4 0.0010549730722059787 0.0 0.07471413772563237 4.881218692296319E-4 64-65 1.1022106724540075E-4 0.0011809400062007223 0.0 0.07981579855241949 4.881218692296319E-4 66-67 1.1022106724540075E-4 0.0011809400062007223 0.0 0.08520875791406946 4.881218692296319E-4 68-69 1.1022106724540075E-4 0.0011888129395753939 0.0 0.09011359540648978 4.881218692296319E-4 70-71 1.2596693399474372E-4 0.0011966858729500654 0.0 0.09398707862682815 5.038677359789749E-4 72-73 1.2596693399474372E-4 0.0012045588063247367 0.0 0.0972858377108155 5.511053362270038E-4 74-75 1.2596693399474372E-4 0.0012517964065727656 0.0 0.10000987265845185 5.511053362270038E-4 76-77 1.2596693399474372E-4 0.0013147798735701375 0.0 0.10226153160360787 5.747241363510181E-4 78-79 1.2596693399474372E-4 0.001322652806944809 0.0 0.10395421227916224 5.825970697256897E-4 80-81 1.2596693399474372E-4 0.001322652806944809 0.0 0.10455255521563728 5.983429364750327E-4 82-83 1.2596693399474372E-4 0.001322652806944809 0.0 0.10509578761848962 6.140888032243756E-4 84-85 1.2596693399474372E-4 0.0013383986736941519 0.0 0.10530048388623107 6.140888032243756E-4 86-87 1.2596693399474372E-4 0.0013383986736941519 0.0 0.10533984855310444 6.140888032243756E-4 88 1.2596693399474372E-4 0.0014958573411875816 0.0 0.10533984855310444 6.140888032243756E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9665 0.0 52.093502 1 GTATCAA 18230 0.0 38.281807 1 CTTATAC 5075 0.0 33.06954 1 ATCAACG 21305 0.0 32.08356 3 TCAACGC 22165 0.0 30.856287 4 CAACGCA 22840 0.0 29.993858 5 TATCAAC 22995 0.0 29.982332 2 AACGCAG 23060 0.0 29.721777 6 ACGCAGA 23445 0.0 29.28764 7 TATACAC 7250 0.0 26.114965 3 CGCAGAG 26795 0.0 25.594538 8 GTGGTAT 4320 0.0 24.59789 1 TGGTATC 4310 0.0 23.77443 2 TTATACA 7515 0.0 23.17406 2 GCAGAGT 30905 0.0 22.136211 9 ACACATC 7975 0.0 20.983278 6 GAGTACT 18820 0.0 20.47105 12-13 GTACATG 20610 0.0 20.234821 1 TACACAT 9460 0.0 19.920097 5 TACATGG 20595 0.0 19.799114 2 >>END_MODULE